A citation-based method for searching scientific literature

W L William Chang, Jesse D Deere, Hung T Kieu, Luis D Castillo, Kawthar Machmach, Xiaoying Shen, Georgia D Tomaras, Barbara L Shacklett, Peter A Barry, Dennis J Hartigan-O'Connor, Ellen E Sparger. Sci Rep 2020
Times Cited: 2







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cytomegalovirus mediates expansion of IL-15-responsive innate-memory cells with SIV killing function.
Gema Méndez-Lagares, Ning Chin, W L William Chang, Jaewon Lee, Míriam Rosás-Umbert, Hung T Kieu, David Merriam, Wenze Lu, Sungjin Kim, Lourdes Adamson,[...]. J Clin Invest 2021
6
100

Breadth of CD8 T-cell mediated inhibition of replication of diverse HIV-1 transmitted-founder isolates correlates with the breadth of recognition within a comprehensive HIV-1 Gag, Nef, Env and Pol potential T-cell epitope (PTE) peptide set.
Peter Hayes, Natalia Fernandez, Christina Ochsenbauer, Jama Dalel, Jonathan Hare, Deborah King, Lucas Black, Claire Streatfield, Vanaja Kakarla, Gladys Macharia,[...]. PLoS One 2021
3
50

HIV-1 conserved-element vaccines: relationship between sequence conservation and replicative capacity.
Morgane Rolland, Siriphan Manocheewa, J Victor Swain, Erinn C Lanxon-Cookson, Moon Kim, Dylan H Westfall, Brendan B Larsen, Peter B Gilbert, James I Mullins. J Virol 2013
45
50

Cytomegalovirus vectors violate CD8+ T cell epitope recognition paradigms.
Scott G Hansen, Jonah B Sacha, Colette M Hughes, Julia C Ford, Benjamin J Burwitz, Isabel Scholz, Roxanne M Gilbride, Matthew S Lewis, Awbrey N Gilliam, Abigail B Ventura,[...]. Science 2013
330
50

Human antimicrobial cytotoxic T lymphocytes, defined by NK receptors and antimicrobial proteins, kill intracellular bacteria.
Samuel J Balin, Matteo Pellegrini, Eynav Klechevsky, Sohui T Won, David I Weiss, Aaron W Choi, Joshua Hakimian, Jing Lu, Maria Teresa Ochoa, Barry R Bloom,[...]. Sci Immunol 2018
35
50

HLA class-I-peptide stability mediates CD8+ T cell immunodominance hierarchies and facilitates HLA-associated immune control of HIV.
Clarety Kaseke, Ryan J Park, Nishant K Singh, Dylan Koundakjian, Arman Bashirova, Wilfredo F Garcia Beltran, Overbeck C Takou Mbah, Jiaqi Ma, Fernando Senjobe, Jonathan M Urbach,[...]. Cell Rep 2021
5
50

Dendritic cells focus CTL responses toward highly conserved and topologically important HIV-1 epitopes.
Tatiana M Garcia-Bates, Mariana L Palma, Renee R Anderko, Denise C Hsu, Jintanat Ananworanich, Bette T Korber, Gaurav D Gaiha, Nittaya Phanuphak, Rasmi Thomas, Sodsai Tovanabutra,[...]. EBioMedicine 2021
5
50

CTL responses of high functional avidity and broad variant cross-reactivity are associated with HIV control.
Beatriz Mothe, Anuska Llano, Javier Ibarrondo, Jennifer Zamarreño, Mattia Schiaulini, Cristina Miranda, Marta Ruiz-Riol, Christoph T Berger, M José Herrero, Eduard Palou,[...]. PLoS One 2012
109
50

CD8 T cell response and evolutionary pressure to HIV-1 cryptic epitopes derived from antisense transcription.
Anju Bansal, Jonathan Carlson, Jiyu Yan, Olusimidele T Akinsiku, Malinda Schaefer, Steffanie Sabbaj, Anne Bet, David N Levy, Sonya Heath, Jianming Tang,[...]. J Exp Med 2010
61
50

Viral adaptation to immune selection pressure by HLA class I-restricted CTL responses targeting epitopes in HIV frameshift sequences.
Christoph T Berger, Jonathan M Carlson, Chanson J Brumme, Kari L Hartman, Zabrina L Brumme, Leah M Henry, Pamela C Rosato, Alicja Piechocka-Trocha, Mark A Brockman, P Richard Harrigan,[...]. J Exp Med 2010
44
50

Degeneracy and repertoire of the human HIV-1 Gag p17(77-85) CTL response.
June Kan-Mitchell, Melissa Bajcz, Keri L Schaubert, David A Price, Jason M Brenchley, Tedi E Asher, Daniel C Douek, Hwee L Ng, Otto O Yang, Charles R Rinaldo,[...]. J Immunol 2006
25
50

Env-independent protection of intrarectal SIV challenge by vaccine induction of Gag/Vif-specific CD8+ T cells but not CD4+ T cells.
Hiroshi Ishii, Kazutaka Terahara, Takushi Nomura, Midori Okazaki, Hiroyuki Yamamoto, Tsugumine Shu, Hiromi Sakawaki, Tomoyuki Miura, David I Watkins, Tetsuro Matano. Mol Ther 2022
1
100

TCF-1 regulates HIV-specific CD8+ T cell expansion capacity.
Rachel L Rutishauser, Christian Deo T Deguit, Joseph Hiatt, Franziska Blaeschke, Theodore L Roth, Lynn Wang, Kyle A Raymond, Carly E Starke, Joseph C Mudd, Wenxuan Chen,[...]. JCI Insight 2021
26
50

HIV nonprogressors preferentially maintain highly functional HIV-specific CD8+ T cells.
Michael R Betts, Martha C Nason, Sadie M West, Stephen C De Rosa, Stephen A Migueles, Jonathan Abraham, Michael M Lederman, Jose M Benito, Paul A Goepfert, Mark Connors,[...]. Blood 2006
50

Recommendations for analytical antiretroviral treatment interruptions in HIV research trials-report of a consensus meeting.
Boris Julg, Lynda Dee, Jintanat Ananworanich, Dan H Barouch, Katharine Bar, Marina Caskey, Donn J Colby, Liza Dawson, Krista L Dong, Karine Dubé,[...]. Lancet HIV 2019
116
50

Structural topology defines protective CD8+ T cell epitopes in the HIV proteome.
Gaurav D Gaiha, Elizabeth J Rossin, Jonathan Urbach, Christian Landeros, David R Collins, Chioma Nwonu, Itai Muzhingi, Melis N Anahtar, Olivia M Waring, Alicja Piechocka-Trocha,[...]. Science 2019
67
50

Myeloid cell tropism enables MHC-E-restricted CD8+ T cell priming and vaccine efficacy by the RhCMV/SIV vaccine.
Scott G Hansen, Meaghan H Hancock, Daniel Malouli, Emily E Marshall, Colette M Hughes, Kurt T Randall, David Morrow, Julia C Ford, Roxanne M Gilbride, Andrea N Selseth,[...]. Sci Immunol 2022
3
50

Control of simian immunodeficiency virus replication by vaccine-induced Gag- and Vif-specific CD8+ T cells.
Nami Iwamoto, Naofumi Takahashi, Sayuri Seki, Takushi Nomura, Hiroyuki Yamamoto, Makoto Inoue, Tsugumine Shu, Taeko K Naruse, Akinori Kimura, Tetsuro Matano. J Virol 2014
24
50

CD8+ T-cell responses to different HIV proteins have discordant associations with viral load.
Photini Kiepiela, Kholiswa Ngumbela, Christina Thobakgale, Dhanwanthie Ramduth, Isobella Honeyborne, Eshia Moodley, Shabashini Reddy, Chantal de Pierres, Zenele Mncube, Nompumelelo Mkhwanazi,[...]. Nat Med 2007
819
50

T-Follicular-Like CD8+ T Cell Responses in Chronic HIV Infection Are Associated With Virus Control and Antibody Isotype Switching to IgG.
Luis Romero-Martín, Ferran Tarrés-Freixas, Núria Pedreño-López, Maria L Rodríguez de la Concepción, Francesc Cunyat, Dennis Hartigan-O'Connor, Jorge Carrillo, Beatriz Mothe, Julià Blanco, Marta Ruiz-Riol,[...]. Front Immunol 2022
1
100

Antisense-Derived HIV-1 Cryptic Epitopes Are Not Major Drivers of Viral Evolution during the Acute Phase of Infection.
Binghao J Peng, Jonathan M Carlson, Michael K P Liu, Feng Gao, Nilu Goonetilleke, Andrew J McMichael, Persephone Borrow, Jill Gilmour, Sonya L Heath, Eric Hunter,[...]. J Virol 2018
3
50

Lectin purified human class I MHC-derived peptides: evidence for presentation of glycopeptides in vivo.
I B Kastrup, S Stevanovic, G Arsequell, G Valencia, J Zeuthen, H G Rammensee, T Elliott, J S Haurum. Tissue Antigens 2000
35
50

Definition of the viral targets of protective HIV-1-specific T cell responses.
Beatriz Mothe, Anuska Llano, Javier Ibarrondo, Marcus Daniels, Cristina Miranda, Jennifer Zamarreño, Vanessa Bach, Rosario Zuniga, Susana Pérez-Álvarez, Christoph T Berger,[...]. J Transl Med 2011
131
50

Does Antigen Glycosylation Impact the HIV-Specific T Cell Immunity?
Alex Olvera, Samandhy Cedeño, Anuska Llano, Beatriz Mothe, Jorge Sanchez, Gemma Arsequell, Christian Brander. Front Immunol 2021
4
50

HIV-1 group M conserved elements vaccine.
Morgane Rolland, David C Nickle, James I Mullins. PLoS Pathog 2007
155
50

Gag and env conserved element CE DNA vaccines elicit broad cytotoxic T cell responses targeting subdominant epitopes of HIV and SIV Able to recognize virus-infected cells in macaques.
Xintao Hu, Zhongyan Lu, Antonio Valentin, Margherita Rosati, Kate E Broderick, Niranjan Y Sardesai, Preston A Marx, James I Mullins, George N Pavlakis, Barbara K Felber. Hum Vaccin Immunother 2018
10
50


Epigraph: A Vaccine Design Tool Applied to an HIV Therapeutic Vaccine and a Pan-Filovirus Vaccine.
James Theiler, Hyejin Yoon, Karina Yusim, Louis J Picker, Klaus Fruh, Bette Korber. Sci Rep 2016
26
50

Ineffectual targeting of HIV-1 Nef by cytotoxic T lymphocytes in acute infection results in no functional impairment or viremia reduction.
Justin De La Cruz, Thomas Vollbrecht, Patricia Frohnen, Hwee L Ng, Eric S Daar, Otto O Yang, Martha J Lewis. J Virol 2014
4
50

Determinant of HIV-1 mutational escape from cytotoxic T lymphocytes.
Otto O Yang, Phuong Thi Nguyen Sarkis, Ayub Ali, Jason D Harlow, Christian Brander, Spyros A Kalams, Bruce D Walker. J Exp Med 2003
110
50

Altered response hierarchy and increased T-cell breadth upon HIV-1 conserved element DNA vaccination in macaques.
Viraj Kulkarni, Antonio Valentin, Margherita Rosati, Candido Alicea, Ashish K Singh, Rashmi Jalah, Kate E Broderick, Niranjan Y Sardesai, Sylvie Le Gall, Beatriz Mothe,[...]. PLoS One 2014
45
50

A human immune data-informed vaccine concept elicits strong and broad T-cell specificities associated with HIV-1 control in mice and macaques.
Beatriz Mothe, Xintao Hu, Anuska Llano, Margherita Rosati, Alex Olvera, Viraj Kulkarni, Antonio Valentin, Candido Alicea, Guy R Pilkington, Niranjan Y Sardesai,[...]. J Transl Med 2015
70
50

Comparative immunogenicity of an mRNA/LNP and a DNA vaccine targeting HIV gag conserved elements in macaques.
Antonio Valentin, Cristina Bergamaschi, Margherita Rosati, Matthew Angel, Robert Burns, Mahesh Agarwal, Janina Gergen, Benjamin Petsch, Lidia Oostvogels, Edde Loeliger,[...]. Front Immunol 2022
2
50

Preclinical evaluation of HIV-1 therapeutic ex vivo dendritic cell vaccines expressing consensus Gag antigens and conserved Gag epitopes.
Liguo Niu, James M Termini, Saravana K Kanagavelu, Sachin Gupta, Morgane M Rolland, Viraj Kulkarni, George N Pavlakis, Barbara K Felber, James I Mullins, Margaret A Fischl,[...]. Vaccine 2011
21
50

AIDS virus-specific cytotoxic T lymphocytes in lung disorders.
F Plata, B Autran, L P Martins, S Wain-Hobson, M Raphaël, C Mayaud, M Denis, J M Guillon, P Debré. Nature 1987
615
50

HIVconsv Vaccines and Romidepsin in Early-Treated HIV-1-Infected Individuals: Safety, Immunogenicity and Effect on the Viral Reservoir (Study BCN02).
Beatriz Mothe, Miriam Rosás-Umbert, Pep Coll, Christian Manzardo, Maria C Puertas, Sara Morón-López, Anuska Llano, Cristina Miranda, Samandhy Cedeño, Miriam López,[...]. Front Immunol 2020
34
50

A CD4+ T cell antagonist epitope down-regulates activating signaling proteins, up-regulates inhibitory signaling proteins and abrogates HIV-specific T cell function.
Evan S Jacobs, Desmond Persad, Longsi Ran, Ali Danesh, John W Heitman, Xutao Deng, Mark J Cameron, David J Kelvin, Philip J Norris. Retrovirology 2014
2
50

HIV-specific cytotoxic T lymphocytes in seropositive individuals.
B D Walker, S Chakrabarti, B Moss, T J Paradis, T Flynn, A G Durno, R S Blumberg, J C Kaplan, M S Hirsch, R T Schooley. Nature 1987
825
50

Design and pre-clinical evaluation of a universal HIV-1 vaccine.
Sven Létourneau, Eung-Jun Im, Tumelo Mashishi, Choechoe Brereton, Anne Bridgeman, Hongbing Yang, Lucy Dorrell, Tao Dong, Bette Korber, Andrew J McMichael,[...]. PLoS One 2007
229
50

Effect of epitope variant co-delivery on the depth of CD8 T cell responses induced by HIV-1 conserved mosaic vaccines.
Edmund G Wee, Nathifa Moyo, Zara Hannoun, Elena E Giorgi, Bette Korber, Tomáš Hanke. Mol Ther Methods Clin Dev 2021
3
50

Enhanced SIV replication and accelerated progression to AIDS in macaques primed to mount a CD4 T cell response to the SIV envelope protein.
Silvija I Staprans, Ashley P Barry, Guido Silvestri, Jeffrey T Safrit, Natalia Kozyr, Beth Sumpter, Hanh Nguyen, Harold McClure, David Montefiori, Jeffrey I Cohen,[...]. Proc Natl Acad Sci U S A 2004
117
50

Cytotoxic T-cell activity antagonized by naturally occurring HIV-1 Gag variants.
P Klenerman, S Rowland-Jones, S McAdam, J Edwards, S Daenke, D Lalloo, B Köppe, W Rosenberg, D Boyd, A Edwards. Nature 1994
397
50

Tetravalent Immunogen Assembled from Conserved Regions of HIV-1 and Delivered as mRNA Demonstrates Potent Preclinical T-Cell Immunogenicity and Breadth.
Nathifa Moyo, Edmund G Wee, Bette Korber, Kapil Bahl, Samantha Falcone, Sunny Himansu, Adrianne L Wong, Antu K Dey, Mark Feinberg, Tomáš Hanke. Vaccines (Basel) 2020
7
50

Statistical evaluation of diet-microbe associations.
Xiang Zhang, Max Nieuwdorp, Albert K Groen, Aeiko H Zwinderman. BMC Microbiol 2019
12
50

Sequential Infection with Common Pathogens Promotes Human-like Immune Gene Expression and Altered Vaccine Response.
Tiffany A Reese, Kevin Bi, Amal Kambal, Ali Filali-Mouhim, Lalit K Beura, Matheus C Bürger, Bali Pulendran, Rafick-Pierre Sekaly, Stephen C Jameson, David Masopust,[...]. Cell Host Microbe 2016
149
50


pROC: an open-source package for R and S+ to analyze and compare ROC curves.
Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez, Markus Müller. BMC Bioinformatics 2011
50

The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes.
Aleksandar D Kostic, Dirk Gevers, Heli Siljander, Tommi Vatanen, Tuulia Hyötyläinen, Anu-Maaria Hämäläinen, Aleksandr Peet, Vallo Tillmann, Päivi Pöhö, Ismo Mattila,[...]. Cell Host Microbe 2015
634
50

Short-chain fatty acids induce pro-inflammatory cytokine production alone and in combination with toll-like receptor ligands.
Paria Mirmonsef, Mohammad R Zariffard, Douglas Gilbert, Hadijat Makinde, Alan L Landay, Greg T Spear. Am J Reprod Immunol 2012
101
50

Faecalibacterium prausnitzii supernatant ameliorates dextran sulfate sodium induced colitis by regulating Th17 cell differentiation.
Xiao-Li Huang, Xin Zhang, Xian-Yan Fei, Zhao-Gui Chen, Yan-Ping Hao, Shu Zhang, Ming-Ming Zhang, Yan-Qiu Yu, Cheng-Gong Yu. World J Gastroenterol 2016
31
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.