A citation-based method for searching scientific literature

Yiming Zhong, Feng Xu, Jinhua Wu, Jeffrey Schubert, Marilyn M Li. Ann Lab Med 2021
Times Cited: 7







List of co-cited articles
21 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genome sequencing in microfabricated high-density picolitre reactors.
Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen,[...]. Nature 2005
28

The new sequencer on the block: comparison of Life Technology's Proton sequencer to an Illumina HiSeq for whole-exome sequencing.
Joseph F Boland, Charles C Chung, David Roberson, Jason Mitchell, Xijun Zhang, Kate M Im, Ji He, Stephen J Chanock, Meredith Yeager, Michael Dean. Hum Genet 2013
58
28

Standards and Guidelines for the Interpretation and Reporting of Sequence Variants in Cancer: A Joint Consensus Recommendation of the Association for Molecular Pathology, American Society of Clinical Oncology, and College of American Pathologists.
Marilyn M Li, Michael Datto, Eric J Duncavage, Shashikant Kulkarni, Neal I Lindeman, Somak Roy, Apostolia M Tsimberidou, Cindy L Vnencak-Jones, Daynna J Wolff, Anas Younes,[...]. J Mol Diagn 2017
520
28

Circulating Tumor DNA Analysis in Patients With Cancer: American Society of Clinical Oncology and College of American Pathologists Joint Review.
Jason D Merker, Geoffrey R Oxnard, Carolyn Compton, Maximilian Diehn, Patricia Hurley, Alexander J Lazar, Neal Lindeman, Christina M Lockwood, Alex J Rai, Richard L Schilsky,[...]. J Clin Oncol 2018
345
28

Assembling large genomes with single-molecule sequencing and locality-sensitive hashing.
Konstantin Berlin, Sergey Koren, Chen-Shan Chin, James P Drake, Jane M Landolin, Adam M Phillippy. Nat Biotechnol 2015
459
28

The Third Revolution in Sequencing Technology.
Erwin L van Dijk, Yan Jaszczyszyn, Delphine Naquin, Claude Thermes. Trends Genet 2018
242
28

Transforming single DNA molecules into fluorescent magnetic particles for detection and enumeration of genetic variations.
Devin Dressman, Hai Yan, Giovanni Traverso, Kenneth W Kinzler, Bert Vogelstein. Proc Natl Acad Sci U S A 2003
473
28

Sequencing technologies - the next generation.
Michael L Metzker. Nat Rev Genet 2010
28

Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing.
Jason L Weirather, Pegah Tootoonchi Afshar, Tyson A Clark, Elizabeth Tseng, Linda S Powers, Jason G Underwood, Joseph Zabner, Jonas Korlach, Wing Hung Wong, Kin Fai Au. Nucleic Acids Res 2015
56
28

Ten years of next-generation sequencing technology.
Erwin L van Dijk, Hélène Auger, Yan Jaszczyszyn, Claude Thermes. Trends Genet 2014
595
28

Are whole-exome and whole-genome sequencing approaches cost-effective? A systematic review of the literature.
Katharina Schwarze, James Buchanan, Jenny C Taylor, Sarah Wordsworth. Genet Med 2018
176
28

Current and future perspectives of liquid biopsies in genomics-driven oncology.
Ellen Heitzer, Imran S Haque, Charles E S Roberts, Michael R Speicher. Nat Rev Genet 2019
318
28

An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome.
Marco Ferrarini, Marco Moretto, Judson A Ward, Nada Šurbanovski, Vladimir Stevanović, Lara Giongo, Roberto Viola, Duccio Cavalieri, Riccardo Velasco, Alessandro Cestaro,[...]. BMC Genomics 2013
80
28

An integrated semiconductor device enabling non-optical genome sequencing.
Jonathan M Rothberg, Wolfgang Hinz, Todd M Rearick, Jonathan Schultz, William Mileski, Mel Davey, John H Leamon, Kim Johnson, Mark J Milgrew, Matthew Edwards,[...]. Nature 2011
922
28

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers.
Michael A Quail, Miriam Smith, Paul Coupland, Thomas D Otto, Simon R Harris, Thomas R Connor, Anna Bertoni, Harold P Swerdlow, Yong Gu. BMC Genomics 2012
28

Guidelines for Validation of Next-Generation Sequencing-Based Oncology Panels: A Joint Consensus Recommendation of the Association for Molecular Pathology and College of American Pathologists.
Lawrence J Jennings, Maria E Arcila, Christopher Corless, Suzanne Kamel-Reid, Ira M Lubin, John Pfeifer, Robyn L Temple-Smolkin, Karl V Voelkerding, Marina N Nikiforova. J Mol Diagn 2017
233
28

Accurate whole human genome sequencing using reversible terminator chemistry.
David R Bentley, Shankar Balasubramanian, Harold P Swerdlow, Geoffrey P Smith, John Milton, Clive G Brown, Kevin P Hall, Dirk J Evers, Colin L Barnes, Helen R Bignell,[...]. Nature 2008
28

Performance of Streck cfDNA Blood Collection Tubes for Liquid Biopsy Testing.
Inga Medina Diaz, Annette Nocon, Daniel H Mehnert, Johannes Fredebohm, Frank Diehl, Frank Holtrup. PLoS One 2016
96
28


Detection of circulating tumor DNA in early- and late-stage human malignancies.
Chetan Bettegowda, Mark Sausen, Rebecca J Leary, Isaac Kinde, Yuxuan Wang, Nishant Agrawal, Bjarne R Bartlett, Hao Wang, Brandon Luber, Rhoda M Alani,[...]. Sci Transl Med 2014
28

Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia.
George Adrian Calin, Calin Dan Dumitru, Masayoshi Shimizu, Roberta Bichi, Simona Zupo, Evan Noch, Hansjuerg Aldler, Sashi Rattan, Michael Keating, Kanti Rai,[...]. Proc Natl Acad Sci U S A 2002
28

Cell-Free DNA in Oncology: Gearing up for Clinic.
Bryan C Ulrich, Cloud P Paweletz. Ann Lab Med 2018
18
14

The utility of the traditional medical genetics diagnostic evaluation in the context of next-generation sequencing for undiagnosed genetic disorders.
Vandana Shashi, Allyn McConkie-Rosell, Bruce Rosell, Kelly Schoch, Kasturi Vellore, Marie McDonald, Yong-Hui Jiang, Pingxing Xie, Anna Need, David B Goldstein. Genet Med 2014
153
14

High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants.
Pedram Razavi, Bob T Li, David N Brown, Byoungsok Jung, Earl Hubbell, Ronglai Shen, Wassim Abida, Krishna Juluru, Ino De Bruijn, Chenlu Hou,[...]. Nat Med 2019
167
14

Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures.
Jonas Korlach, Patrick J Marks, Ronald L Cicero, Jeremy J Gray, Devon L Murphy, Daniel B Roitman, Thang T Pham, Geoff A Otto, Mathieu Foquet, Stephen W Turner. Proc Natl Acad Sci U S A 2008
114
14

Genomics in clinical practice: lessons from the front lines.
Howard J Jacob, Kelly Abrams, David P Bick, Kent Brodie, David P Dimmock, Michael Farrell, Jennifer Geurts, Jeremy Harris, Daniel Helbling, Barbara J Joers,[...]. Sci Transl Med 2013
67
14

Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adults.
Charles Langelier, Katrina L Kalantar, Farzad Moazed, Michael R Wilson, Emily D Crawford, Thomas Deiss, Annika Belzer, Samaneh Bolourchi, Saharai Caldera, Monica Fung,[...]. Proc Natl Acad Sci U S A 2018
87
14


Clinical utility of custom-designed NGS panel testing in pediatric tumors.
Lea F Surrey, Suzanne P MacFarland, Fengqi Chang, Kajia Cao, Komal S Rathi, Gozde T Akgumus, Daniel Gallo, Fumin Lin, Adam Gleason, Pichai Raman,[...]. Genome Med 2019
31
14

Applying Rapid Whole-Genome Sequencing To Predict Phenotypic Antimicrobial Susceptibility Testing Results among Carbapenem-Resistant Klebsiella pneumoniae Clinical Isolates.
Pranita D Tamma, Yunfan Fan, Yehudit Bergman, Geo Pertea, Abida Q Kazmi, Shawna Lewis, Karen C Carroll, Michael C Schatz, Winston Timp, Patricia J Simner. Antimicrob Agents Chemother 2018
25
14

Efficacy of Larotrectinib in TRK Fusion-Positive Cancers in Adults and Children.
Alexander Drilon, Theodore W Laetsch, Shivaani Kummar, Steven G DuBois, Ulrik N Lassen, George D Demetri, Michael Nathenson, Robert C Doebele, Anna F Farago, Alberto S Pappo,[...]. N Engl J Med 2018
894
14

A hybrid approach for the automated finishing of bacterial genomes.
Ali Bashir, Aaron Klammer, William P Robins, Chen-Shan Chin, Dale Webster, Ellen Paxinos, David Hsu, Meredith Ashby, Susana Wang, Paul Peluso,[...]. Nat Biotechnol 2012
119
14

Single-Cell RNA-Seq Technologies and Related Computational Data Analysis.
Geng Chen, Baitang Ning, Tieliu Shi. Front Genet 2019
147
14

Evaluation of Whole-Genome Sequencing for Mycobacterial Species Identification and Drug Susceptibility Testing in a Clinical Setting: a Large-Scale Prospective Assessment of Performance against Line Probe Assays and Phenotyping.
T Phuong Quan, Zharain Bawa, Dona Foster, Tim Walker, Carlos Del Ojo Elias, Priti Rathod, Zamin Iqbal, Phelim Bradley, Janet Mowbray, A Sarah Walker,[...]. J Clin Microbiol 2018
32
14

Hybrid error correction and de novo assembly of single-molecule sequencing reads.
Sergey Koren, Michael C Schatz, Brian P Walenz, Jeffrey Martin, Jason T Howard, Ganeshkumar Ganapathy, Zhong Wang, David A Rasko, W Richard McCombie, Erich D Jarvis,[...]. Nat Biotechnol 2012
580
14

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia.
Steven D Brown, Shilpa Nagaraju, Sagar Utturkar, Sashini De Tissera, Simón Segovia, Wayne Mitchell, Miriam L Land, Asela Dassanayake, Michael Köpke. Biotechnol Biofuels 2014
80
14

Minimal Residual Disease Assessment Within the Bone Marrow of Multiple Myeloma: A Review of Caveats, Clinical Significance and Future Perspectives.
Alessandra Romano, Giuseppe Alberto Palumbo, Nunziatina Laura Parrinello, Concetta Conticello, Marina Martello, Carolina Terragna. Front Oncol 2019
24
14

Depletion of Human DNA in Spiked Clinical Specimens for Improvement of Sensitivity of Pathogen Detection by Next-Generation Sequencing.
Mohammad R Hasan, Arun Rawat, Patrick Tang, Puthen V Jithesh, Eva Thomas, Rusung Tan, Peter Tilley. J Clin Microbiol 2016
65
14

Multicenter Evaluation of BioFire FilmArray Meningitis/Encephalitis Panel for Detection of Bacteria, Viruses, and Yeast in Cerebrospinal Fluid Specimens.
Amy L Leber, Kathy Everhart, Joan-Miquel Balada-Llasat, Jillian Cullison, Judy Daly, Sarah Holt, Paul Lephart, Hossein Salimnia, Paul C Schreckenberger, Sharon DesJarlais,[...]. J Clin Microbiol 2016
225
14

Costs and Consequences Associated With Misdiagnosed Lower Extremity Cellulitis.
Qing Yu Weng, Adam B Raff, Jeffrey M Cohen, Nicole Gunasekera, Jean-Phillip Okhovat, Priyanka Vedak, Cara Joyce, Daniela Kroshinsky, Arash Mostaghimi. JAMA Dermatol 2017
63
14


DNA sequencing technologies: 2006-2016.
Elaine R Mardis. Nat Protoc 2017
98
14

Enhanced utility of family-centered diagnostic exome sequencing with inheritance model-based analysis: results from 500 unselected families with undiagnosed genetic conditions.
Kelly D Farwell, Layla Shahmirzadi, Dima El-Khechen, Zöe Powis, Elizabeth C Chao, Brigette Tippin Davis, Ruth M Baxter, Wenqi Zeng, Cameron Mroske, Melissa C Parra,[...]. Genet Med 2015
285
14

RNA-Seq: a revolutionary tool for transcriptomics.
Zhong Wang, Mark Gerstein, Michael Snyder. Nat Rev Genet 2009
14

Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing.
Garrett M Frampton, Alex Fichtenholtz, Geoff A Otto, Kai Wang, Sean R Downing, Jie He, Michael Schnall-Levin, Jared White, Eric M Sanford, Peter An,[...]. Nat Biotechnol 2013
14

Standards and Guidelines for Validating Next-Generation Sequencing Bioinformatics Pipelines: A Joint Recommendation of the Association for Molecular Pathology and the College of American Pathologists.
Somak Roy, Christopher Coldren, Arivarasan Karunamurthy, Nefize S Kip, Eric W Klee, Stephen E Lincoln, Annette Leon, Mrudula Pullambhatla, Robyn L Temple-Smolkin, Karl V Voelkerding,[...]. J Mol Diagn 2018
144
14

Whole-genome sequencing is more powerful than whole-exome sequencing for detecting exome variants.
Aziz Belkadi, Alexandre Bolze, Yuval Itan, Aurélie Cobat, Quentin B Vincent, Alexander Antipenko, Lei Shang, Bertrand Boisson, Jean-Laurent Casanova, Laurent Abel. Proc Natl Acad Sci U S A 2015
243
14

Umbrella and basket trials in oncology: ethical challenges.
Karolina Strzebonska, Marcin Waligora. BMC Med Ethics 2019
10
14

Recognizing the reagent microbiome.
Marcus C de Goffau, Susanne Lager, Susannah J Salter, Josef Wagner, Andreas Kronbichler, D Stephen Charnock-Jones, Sharon J Peacock, Gordon C S Smith, Julian Parkhill. Nat Microbiol 2018
111
14

Opportunities and challenges of whole-genome and -exome sequencing.
Britt-Sabina Petersen, Broder Fredrich, Marc P Hoeppner, David Ellinghaus, Andre Franke. BMC Genet 2017
81
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.