A citation-based method for searching scientific literature

Shuo Han, Boxuan Simen Zhao, Samuel A Myers, Steven A Carr, Chuan He, Alice Y Ting. Proc Natl Acad Sci U S A 2020
Times Cited: 20







List of co-cited articles
221 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Atlas of Subcellular RNA Localization Revealed by APEX-Seq.
Furqan M Fazal, Shuo Han, Kevin R Parker, Pornchai Kaewsapsak, Jin Xu, Alistair N Boettiger, Howard Y Chang, Alice Y Ting. Cell 2019
128
45

β-Actin mRNA interactome mapping by proximity biotinylation.
Joyita Mukherjee, Orit Hermesh, Carolina Eliscovich, Nicolas Nalpas, Mirita Franz-Wachtel, Boris Maček, Ralf-Peter Jansen. Proc Natl Acad Sci U S A 2019
26
40

CRISPR-assisted detection of RNA-protein interactions in living cells.
Wenkai Yi, Jingyu Li, Xiaoxuan Zhu, Xi Wang, Ligang Fan, Wenju Sun, Linbu Liao, Jilin Zhang, Xiaoyu Li, Jing Ye,[...]. Nat Methods 2020
16
43

Split-BioID a conditional proteomics approach to monitor the composition of spatiotemporally defined protein complexes.
Isabel Myriam Schopp, Cinthia Claudia Amaya Ramirez, Jerneja Debeljak, Elisa Kreibich, Merle Skribbe, Klemens Wild, Julien Béthune. Nat Commun 2017
78
35

Split-TurboID enables contact-dependent proximity labeling in cells.
Kelvin F Cho, Tess C Branon, Sanjana Rajeev, Tanya Svinkina, Namrata D Udeshi, Themis Thoudam, Chulhwan Kwak, Hyun-Woo Rhee, In-Kyu Lee, Steven A Carr,[...]. Proc Natl Acad Sci U S A 2020
44
30

RNA editing with CRISPR-Cas13.
David B T Cox, Jonathan S Gootenberg, Omar O Abudayyeh, Brian Franklin, Max J Kellner, Julia Joung, Feng Zhang. Science 2017
522
30

RNA-protein interaction detection in living cells.
Muthukumar Ramanathan, Karim Majzoub, Deepti S Rao, Poornima H Neela, Brian J Zarnegar, Smarajit Mondal, Julien G Roth, Hui Gai, Joanna R Kovalski, Zurab Siprashvili,[...]. Nat Methods 2018
100
30

Directed Evolution of Split APEX2 Peroxidase.
Yisu Han, Tess Caroline Branon, Jeffrey D Martell, Daniela Boassa, David Shechner, Mark H Ellisman, Alice Ting. ACS Chem Biol 2019
48
30

Capturing RNA-protein interaction via CRUIS.
Ziheng Zhang, Weiping Sun, Tiezhu Shi, Pengfei Lu, Min Zhuang, Ji-Long Liu. Nucleic Acids Res 2020
13
46

Efficient proximity labeling in living cells and organisms with TurboID.
Tess C Branon, Justin A Bosch, Ariana D Sanchez, Namrata D Udeshi, Tanya Svinkina, Steven A Carr, Jessica L Feldman, Norbert Perrimon, Alice Y Ting. Nat Biotechnol 2018
280
30


Live-cell mapping of organelle-associated RNAs via proximity biotinylation combined with protein-RNA crosslinking.
Pornchai Kaewsapsak, David Michael Shechner, William Mallard, John L Rinn, Alice Y Ting. Elife 2017
72
30

An improved smaller biotin ligase for BioID proximity labeling.
Dae In Kim, Samuel C Jensen, Kyle A Noble, Birendra Kc, Kenneth H Roux, Khatereh Motamedchaboki, Kyle J Roux. Mol Biol Cell 2016
240
30

Split-BioID: a proximity biotinylation assay for dimerization-dependent protein interactions.
Sofie De Munter, Janina Görnemann, Rita Derua, Bart Lesage, Junbin Qian, Ewald Heroes, Etienne Waelkens, Aleyde Van Eynde, Monique Beullens, Mathieu Bollen. FEBS Lett 2017
47
25

CLIP identifies Nova-regulated RNA networks in the brain.
Jernej Ule, Kirk B Jensen, Matteo Ruggiu, Aldo Mele, Aljaz Ule, Robert B Darnell. Science 2003
732
25

RNA targeting with CRISPR-Cas13.
Omar O Abudayyeh, Jonathan S Gootenberg, Patrick Essletzbichler, Shuo Han, Julia Joung, Joseph J Belanto, Vanessa Verdine, David B T Cox, Max J Kellner, Aviv Regev,[...]. Nature 2017
550
25

C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector.
Omar O Abudayyeh, Jonathan S Gootenberg, Silvana Konermann, Julia Joung, Ian M Slaymaker, David B T Cox, Sergey Shmakov, Kira S Makarova, Ekaterina Semenova, Leonid Minakhin,[...]. Science 2016
685
25

Dynamic Imaging of RNA in Living Cells by CRISPR-Cas13 Systems.
Liang-Zhong Yang, Yang Wang, Si-Qi Li, Run-Wen Yao, Peng-Fei Luan, Huang Wu, Gordon G Carmichael, Ling-Ling Chen. Mol Cell 2019
69
25

Probing nuclear pore complex architecture with proximity-dependent biotinylation.
Dae In Kim, K C Birendra, Wenhong Zhu, Khatereh Motamedchaboki, Valérie Doye, Kyle J Roux. Proc Natl Acad Sci U S A 2014
240
25

Directed evolution of APEX2 for electron microscopy and proximity labeling.
Stephanie S Lam, Jeffrey D Martell, Kimberli J Kamer, Thomas J Deerinck, Mark H Ellisman, Vamsi K Mootha, Alice Y Ting. Nat Methods 2015
458
25

Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.
Hyun-Woo Rhee, Peng Zou, Namrata D Udeshi, Jeffrey D Martell, Vamsi K Mootha, Steven A Carr, Alice Y Ting. Science 2013
575
25

An Approach to Spatiotemporally Resolve Protein Interaction Networks in Living Cells.
Braden T Lobingier, Ruth Hüttenhain, Kelsie Eichel, Kenneth B Miller, Alice Y Ting, Mark von Zastrow, Nevan J Krogan. Cell 2017
147
25

Engineered ascorbate peroxidase as a genetically encoded reporter for electron microscopy.
Jeffrey D Martell, Thomas J Deerinck, Yasemin Sancak, Thomas L Poulos, Vamsi K Mootha, Gina E Sosinsky, Mark H Ellisman, Alice Y Ting. Nat Biotechnol 2012
355
25

Proteomic Analysis of Unbounded Cellular Compartments: Synaptic Clefts.
Ken H Loh, Philipp S Stawski, Austin S Draycott, Namrata D Udeshi, Emily K Lehrman, Daniel K Wilton, Tanya Svinkina, Thomas J Deerinck, Mark H Ellisman, Beth Stevens,[...]. Cell 2016
154
25

Photoactivatable RNA N6 -Methyladenosine Editing with CRISPR-Cas13.
Jie Zhao, Bing Li, Jianxiong Ma, Weilin Jin, Xinlong Ma. Small 2020
13
30

Transcriptome Engineering with RNA-Targeting Type VI-D CRISPR Effectors.
Silvana Konermann, Peter Lotfy, Nicholas J Brideau, Jennifer Oki, Maxim N Shokhirev, Patrick D Hsu. Cell 2018
276
20

The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.
Colleen A McHugh, Chun-Kan Chen, Amy Chow, Christine F Surka, Christina Tran, Patrick McDonel, Amy Pandya-Jones, Mario Blanco, Christina Burghard, Annie Moradian,[...]. Nature 2015
586
20

Systematic discovery of Xist RNA binding proteins.
Ci Chu, Qiangfeng Cliff Zhang, Simão Teixeira da Rocha, Ryan A Flynn, Maheetha Bharadwaj, J Mauro Calabrese, Terry Magnuson, Edith Heard, Howard Y Chang. Cell 2015
542
20

Cas13d Is a Compact RNA-Targeting Type VI CRISPR Effector Positively Modulated by a WYL-Domain-Containing Accessory Protein.
Winston X Yan, Shaorong Chong, Huaibin Zhang, Kira S Makarova, Eugene V Koonin, David R Cheng, David A Scott. Mol Cell 2018
134
20

Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling.
Samuel A Myers, Jason Wright, Ryan Peckner, Brian T Kalish, Feng Zhang, Steven A Carr. Nat Methods 2018
74
20

Multidimensional Tracking of GPCR Signaling via Peroxidase-Catalyzed Proximity Labeling.
Jaeho Paek, Marian Kalocsay, Dean P Staus, Laura Wingler, Roberta Pascolutti, Joao A Paulo, Steven P Gygi, Andrew C Kruse. Cell 2017
98
20

A split horseradish peroxidase for the detection of intercellular protein-protein interactions and sensitive visualization of synapses.
Jeffrey D Martell, Masahito Yamagata, Thomas J Deerinck, Sébastien Phan, Carolyn G Kwa, Mark H Ellisman, Joshua R Sanes, Alice Y Ting. Nat Biotechnol 2016
78
20

Identification of an elaborate complex mediating postsynaptic inhibition.
Akiyoshi Uezu, Daniel J Kanak, Tyler W A Bradshaw, Erik J Soderblom, Christina M Catavero, Alain C Burette, Richard J Weinberg, Scott H Soderling. Science 2016
118
20

Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID.
Andrea Mair, Shou-Ling Xu, Tess C Branon, Alice Y Ting, Dominique C Bergmann. Elife 2019
39
20

Context-Dependent and Disease-Specific Diversity in Protein Interactions within Stress Granules.
Sebastian Markmiller, Sahar Soltanieh, Kari L Server, Raymond Mak, Wenhao Jin, Mark Y Fang, En-Ching Luo, Florian Krach, Dejun Yang, Anindya Sen,[...]. Cell 2018
281
20

Expanding APEX2 Substrates for Proximity-Dependent Labeling of Nucleic Acids and Proteins in Living Cells.
Ying Zhou, Gang Wang, Pengchong Wang, Zeyao Li, Tieqiang Yue, Jianbin Wang, Peng Zou. Angew Chem Int Ed Engl 2019
17
23

TurboID-based proximity labeling reveals that UBR7 is a regulator of N NLR immune receptor-mediated immunity.
Yongliang Zhang, Gaoyuan Song, Neeraj K Lal, Ugrappa Nagalakshmi, Yuanyuan Li, Wenjie Zheng, Pin-Jui Huang, Tess C Branon, Alice Y Ting, Justin W Walley,[...]. Nat Commun 2019
51
20

A proximity-tagging system to identify membrane protein-protein interactions.
Qiang Liu, Jun Zheng, Weiping Sun, Yinbo Huo, Liye Zhang, Piliang Hao, Haopeng Wang, Min Zhuang. Nat Methods 2018
52
20

Contact-ID, a tool for profiling organelle contact sites, reveals regulatory proteins of mitochondrial-associated membrane formation.
Chulhwan Kwak, Sanghee Shin, Jong-Seok Park, Minkyo Jung, Truong Thi My Nhung, Myeong-Gyun Kang, Chaiheon Lee, Tae-Hyuk Kwon, Sang Ki Park, Ji Young Mun,[...]. Proc Natl Acad Sci U S A 2020
31
20

Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments.
Daniel Benhalevy, Dimitrios G Anastasakis, Markus Hafner. Nat Methods 2018
33
20


Proximity labeling in mammalian cells with TurboID and split-TurboID.
Kelvin F Cho, Tess C Branon, Namrata D Udeshi, Samuel A Myers, Steven A Carr, Alice Y Ting. Nat Protoc 2020
13
23


Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems.
Sergey Shmakov, Omar O Abudayyeh, Kira S Makarova, Yuri I Wolf, Jonathan S Gootenberg, Ekaterina Semenova, Leonid Minakhin, Julia Joung, Silvana Konermann, Konstantin Severinov,[...]. Mol Cell 2015
476
15

Engineering complex synthetic transcriptional programs with CRISPR RNA scaffolds.
Jesse G Zalatan, Michael E Lee, Ricardo Almeida, Luke A Gilbert, Evan H Whitehead, Marie La Russa, Jordan C Tsai, Jonathan S Weissman, John E Dueber, Lei S Qi,[...]. Cell 2015
507
15

Massively parallel Cas13 screens reveal principles for guide RNA design.
Hans-Hermann Wessels, Alejandro Méndez-Mancilla, Xinyi Guo, Mateusz Legut, Zharko Daniloski, Neville E Sanjana. Nat Biotechnol 2020
38
15

Diversity and evolution of class 2 CRISPR-Cas systems.
Sergey Shmakov, Aaron Smargon, David Scott, David Cox, Neena Pyzocha, Winston Yan, Omar O Abudayyeh, Jonathan S Gootenberg, Kira S Makarova, Yuri I Wolf,[...]. Nat Rev Microbiol 2017
359
15

Insights into RNA biology from an atlas of mammalian mRNA-binding proteins.
Alfredo Castello, Bernd Fischer, Katrin Eichelbaum, Rastislav Horos, Benedikt M Beckmann, Claudia Strein, Norman E Davey, David T Humphreys, Thomas Preiss, Lars M Steinmetz,[...]. Cell 2012
15

Two distinct RNase activities of CRISPR-C2c2 enable guide-RNA processing and RNA detection.
Alexandra East-Seletsky, Mitchell R O'Connell, Spencer C Knight, David Burstein, Jamie H D Cate, Robert Tjian, Jennifer A Doudna. Nature 2016
350
15

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.
Silvana Konermann, Mark D Brigham, Alexandro E Trevino, Julia Joung, Omar O Abudayyeh, Clea Barcena, Patrick D Hsu, Naomi Habib, Jonathan S Gootenberg, Hiroshi Nishimasu,[...]. Nature 2015
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.