A citation-based method for searching scientific literature

Bernard Mulvey, Tomás Lagunas, Joseph D Dougherty. Biol Psychiatry 2021
Times Cited: 6







List of co-cited articles
19 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Direct Identification of Hundreds of Expression-Modulating Variants using a Multiplexed Reporter Assay.
Ryan Tewhey, Dylan Kotliar, Daniel S Park, Brandon Liu, Sarah Winnicki, Steven K Reilly, Kristian G Andersen, Tarjei S Mikkelsen, Eric S Lander, Stephen F Schaffner,[...]. Cell 2016
173
50


Massively parallel cis-regulatory analysis in the mammalian central nervous system.
Susan Q Shen, Connie A Myers, Andrew E O Hughes, Leah C Byrne, John G Flannery, Joseph C Corbo. Genome Res 2016
62
50

Saturation mutagenesis of twenty disease-associated regulatory elements at single base-pair resolution.
Martin Kircher, Chenling Xiong, Beth Martin, Max Schubach, Fumitaka Inoue, Robert J A Bell, Joseph F Costello, Jay Shendure, Nadav Ahituv. Nat Commun 2019
45
33

High-throughput identification of human SNPs affecting regulatory element activity.
Joris van Arensbergen, Ludo Pagie, Vincent D FitzPatrick, Marcel de Haas, Marijke P Baltissen, Federico Comoglio, Robin H van der Weide, Hans Teunissen, Urmo Võsa, Lude Franke,[...]. Nat Genet 2019
64
33

A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity.
Fumitaka Inoue, Martin Kircher, Beth Martin, Gregory M Cooper, Daniela M Witten, Michael T McManus, Nadav Ahituv, Jay Shendure. Genome Res 2017
107
33

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
33

MPRAnalyze: statistical framework for massively parallel reporter assays.
Tal Ashuach, David S Fischer, Anat Kreimer, Nadav Ahituv, Fabian J Theis, Nir Yosef. Genome Biol 2019
15
33

Systematic localization of common disease-associated variation in regulatory DNA.
Matthew T Maurano, Richard Humbert, Eric Rynes, Robert E Thurman, Eric Haugen, Hao Wang, Alex P Reynolds, Richard Sandstrom, Hongzhu Qu, Jennifer Brody,[...]. Science 2012
33

The Dynamic Landscape of Open Chromatin during Human Cortical Neurogenesis.
Luis de la Torre-Ubieta, Jason L Stein, Hyejung Won, Carli K Opland, Dan Liang, Daning Lu, Daniel H Geschwind. Cell 2018
130
33

Identification and Massively Parallel Characterization of Regulatory Elements Driving Neural Induction.
Fumitaka Inoue, Anat Kreimer, Tal Ashuach, Nadav Ahituv, Nir Yosef. Cell Stem Cell 2019
23
33

Chromosome conformation elucidates regulatory relationships in developing human brain.
Hyejung Won, Luis de la Torre-Ubieta, Jason L Stein, Neelroop N Parikshak, Jerry Huang, Carli K Opland, Michael J Gandal, Gavin J Sutton, Farhad Hormozdiari, Daning Lu,[...]. Nature 2016
258
33

Systematic dissection of genomic features determining transcription factor binding and enhancer function.
Sharon R Grossman, Xiaolan Zhang, Li Wang, Jesse Engreitz, Alexandre Melnikov, Peter Rogov, Ryan Tewhey, Alina Isakova, Bart Deplancke, Bradley E Bernstein,[...]. Proc Natl Acad Sci U S A 2017
68
33

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis.
Rupali P Patwardhan, Choli Lee, Oren Litvin, David L Young, Dana Pe'er, Jay Shendure. Nat Biotechnol 2009
186
33

Complex effects of nucleotide variants in a mammalian cis-regulatory element.
Jamie C Kwasnieski, Ilaria Mogno, Connie A Myers, Joseph C Corbo, Barak A Cohen. Proc Natl Acad Sci U S A 2012
144
33

Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks.
Michael A White, Connie A Myers, Joseph C Corbo, Barak A Cohen. Proc Natl Acad Sci U S A 2013
121
33

Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay.
Alexandre Melnikov, Anand Murugan, Xiaolan Zhang, Tiberiu Tesileanu, Li Wang, Peter Rogov, Soheil Feizi, Andreas Gnirke, Curtis G Callan, Justin B Kinney,[...]. Nat Biotechnol 2012
363
33

Systematic Functional Dissection of Common Genetic Variation Affecting Red Blood Cell Traits.
Jacob C Ulirsch, Satish K Nandakumar, Li Wang, Felix C Giani, Xiaolan Zhang, Peter Rogov, Alexandre Melnikov, Patrick McDonel, Ron Do, Tarjei S Mikkelsen,[...]. Cell 2016
158
33

Massively parallel reporter assays of melanoma risk variants identify MX2 as a gene promoting melanoma.
Jiyeon Choi, Tongwu Zhang, Andrew Vu, Julien Ablain, Matthew M Makowski, Leandro M Colli, Mai Xu, Rebecca C Hennessey, Jinhu Yin, Harriet Rothschild,[...]. Nat Commun 2020
18
33

Beyond SNP heritability: Polygenicity and discoverability of phenotypes estimated with a univariate Gaussian mixture model.
Dominic Holland, Oleksandr Frei, Rahul Desikan, Chun-Chieh Fan, Alexey A Shadrin, Olav B Smeland, V S Sundar, Paul Thompson, Ole A Andreassen, Anders M Dale. PLoS Genet 2020
31
16


Pleiotropy and Cross-Disorder Genetics Among Psychiatric Disorders.
Phil H Lee, Yen-Chen A Feng, Jordan W Smoller. Biol Psychiatry 2021
7
16


Transcriptomic Insight Into the Polygenic Mechanisms Underlying Psychiatric Disorders.
Leanna M Hernandez, Minsoo Kim, Gil D Hoftman, Jillian R Haney, Luis de la Torre-Ubieta, Bogdan Pasaniuc, Michael J Gandal. Biol Psychiatry 2021
9
16

Genome-wide quantitative enhancer activity maps identified by STARR-seq.
Cosmas D Arnold, Daniel Gerlach, Christoph Stelzer, Łukasz M Boryń, Martina Rath, Alexander Stark. Science 2013
490
16

Risk in Relatives, Heritability, SNP-Based Heritability, and Genetic Correlations in Psychiatric Disorders: A Review.
Bart M L Baselmans, Loïc Yengo, Wouter van Rheenen, Naomi R Wray. Biol Psychiatry 2021
10
16


A Genome-wide Framework for Mapping Gene Regulation via Cellular Genetic Screens.
Molly Gasperini, Andrew J Hill, José L McFaline-Figueroa, Beth Martin, Seungsoo Kim, Melissa D Zhang, Dana Jackson, Anh Leith, Jacob Schreiber, William S Noble,[...]. Cell 2019
133
16

Parsing the Functional Impact of Noncoding Genetic Variants in the Brain Epigenome.
Samuel K Powell, Callan O'Shea, Kristen J Brennand, Schahram Akbarian. Biol Psychiatry 2021
4
25

Large-Scale Genomics: A Paradigm Shift in Psychiatry?
Michael J Owen, Michael C O'Donovan. Biol Psychiatry 2021
2
50

Wringing Biological Insight From Polygenic Signals.
Steven E Hyman. Biol Psychiatry 2021
2
50

The road to precision psychiatry: translating genetics into disease mechanisms.
Michael J Gandal, Virpi Leppa, Hyejung Won, Neelroop N Parikshak, Daniel H Geschwind. Nat Neurosci 2016
110
16

Association of the T-cell regulatory gene CTLA4 with susceptibility to autoimmune disease.
Hironori Ueda, Joanna M M Howson, Laura Esposito, Joanne Heward, Hywel Snook, Giselle Chamberlain, Daniel B Rainbow, Kara M D Hunter, Annabel N Smith, Gianfranco Di Genova,[...]. Nature 2003
16

FUN-LDA: A Latent Dirichlet Allocation Model for Predicting Tissue-Specific Functional Effects of Noncoding Variation: Methods and Applications.
Daniel Backenroth, Zihuai He, Krzysztof Kiryluk, Valentina Boeva, Lynn Pethukova, Ekta Khurana, Angela Christiano, Joseph D Buxbaum, Iuliana Ionita-Laza. Am J Hum Genet 2018
37
16

CTLA-4 +49 G/A, a functional T1D risk SNP, affects CTLA-4 level in Treg subsets and IA-2A positivity, but not beta-cell function.
Yang Chen, Shu Chen, Yong Gu, Yingjie Feng, Yun Shi, Qi Fu, Zhixiao Wang, Yun Cai, Hao Dai, Shuai Zheng,[...]. Sci Rep 2018
10
16

Presence-only data and the em algorithm.
Gill Ward, Trevor Hastie, Simon Barry, Jane Elith, John R Leathwick. Biometrics 2009
33
16

GeneHancer: genome-wide integration of enhancers and target genes in GeneCards.
Simon Fishilevich, Ron Nudel, Noa Rappaport, Rotem Hadar, Inbar Plaschkes, Tsippi Iny Stein, Naomi Rosen, Asher Kohn, Michal Twik, Marilyn Safran,[...]. Database (Oxford) 2017
330
16

PUlasso: High-Dimensional Variable Selection With Presence-Only Data.
Hyebin Song, Garvesh Raskutti. J Am Stat Assoc 2019
2
50

The mutational constraint spectrum quantified from variation in 141,456 humans.
Konrad J Karczewski, Laurent C Francioli, Grace Tiao, Beryl B Cummings, Jessica Alföldi, Qingbo Wang, Ryan L Collins, Kristen M Laricchia, Andrea Ganna, Daniel P Birnbaum,[...]. Nature 2020
16


Beyond GWASs: illuminating the dark road from association to function.
Stacey L Edwards, Jonathan Beesley, Juliet D French, Alison M Dunning. Am J Hum Genet 2013
424
16

Cost-Sensitive Feature Selection by Optimizing F-Measures.
Meng Liu, Chang Xu, Yong Luo, Chao Xu, Yonggang Wen, Dacheng Tao. IEEE Trans Image Process 2018
5
20

9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response.
Olivier Harismendy, Dimple Notani, Xiaoyuan Song, Nazli G Rahim, Bogdan Tanasa, Nathaniel Heintzman, Bing Ren, Xiang-Dong Fu, Eric J Topol, Michael G Rosenfeld,[...]. Nature 2011
442
16

The NIH Roadmap Epigenomics Mapping Consortium.
Bradley E Bernstein, John A Stamatoyannopoulos, Joseph F Costello, Bing Ren, Aleksandar Milosavljevic, Alexander Meissner, Manolis Kellis, Marco A Marra, Arthur L Beaudet, Joseph R Ecker,[...]. Nat Biotechnol 2010
16

Massively Parallel Assays and Quantitative Sequence-Function Relationships.
Justin B Kinney, David M McCandlish. Annu Rev Genomics Hum Genet 2019
27
16

Genome-wide association study identified new susceptible genetic variants in HLA class I region for hepatitis B virus-related hepatocellular carcinoma.
Hiromi Sawai, Nao Nishida, Seik-Soon Khor, Masao Honda, Masaya Sugiyama, Natsumi Baba, Kayoko Yamada, Norie Sawada, Shoichiro Tsugane, Kazuhiko Koike,[...]. Sci Rep 2018
21
16

A general framework for estimating the relative pathogenicity of human genetic variants.
Martin Kircher, Daniela M Witten, Preti Jain, Brian J O'Roak, Gregory M Cooper, Jay Shendure. Nat Genet 2014
16

The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease.
William J Astle, Heather Elding, Tao Jiang, Dave Allen, Dace Ruklisa, Alice L Mann, Daniel Mead, Heleen Bouman, Fernando Riveros-Mckay, Myrto A Kostadima,[...]. Cell 2016
485
16

From noncoding variant to phenotype via SORT1 at the 1p13 cholesterol locus.
Kiran Musunuru, Alanna Strong, Maria Frank-Kamenetsky, Noemi E Lee, Tim Ahfeldt, Katherine V Sachs, Xiaoyu Li, Hui Li, Nicolas Kuperwasser, Vera M Ruda,[...]. Nature 2010
717
16

Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk.
Stephane E Castel, Alejandra Cervera, Pejman Mohammadi, François Aguet, Ferran Reverter, Aaron Wolman, Roderic Guigo, Ivan Iossifov, Ana Vasileva, Tuuli Lappalainen. Nat Genet 2018
78
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.