A citation-based method for searching scientific literature

Luciana E Giono, Alberto R Kornblihtt. Biochem J 2020
Times Cited: 12







List of co-cited articles
155 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing.
Takayuki Nojima, Tomás Gomes, Ana Rita Fialho Grosso, Hiroshi Kimura, Michael J Dye, Somdutta Dhir, Maria Carmo-Fonseca, Nicholas J Proudfoot. Cell 2015
316
58

A slow RNA polymerase II affects alternative splicing in vivo.
Manuel de la Mata, Claudio R Alonso, Sebastián Kadener, Juan P Fededa, Matías Blaustein, Federico Pelisch, Paula Cramer, David Bentley, Alberto R Kornblihtt. Mol Cell 2003
497
50

Transcription and splicing: A two-way street.
Michael Tellier, Isabella Maudlin, Shona Murphy. Wiley Interdiscip Rev RNA 2020
28
50

Nascent RNA and the Coordination of Splicing with Transcription.
Karla M Neugebauer. Cold Spring Harb Perspect Biol 2019
36
50

How slow RNA polymerase II elongation favors alternative exon skipping.
Gwendal Dujardin, Celina Lafaille, Manuel de la Mata, Luciano E Marasco, Manuel J Muñoz, Catherine Le Jossic-Corcos, Laurent Corcos, Alberto R Kornblihtt. Mol Cell 2014
135
33


Structure of activated transcription complex Pol II-DSIF-PAF-SPT6.
Seychelle M Vos, Lucas Farnung, Marc Boehning, Christoph Wigge, Andreas Linden, Henning Urlaub, Patrick Cramer. Nature 2018
183
25


Regulation of alternative splicing through coupling with transcription and chromatin structure.
Shiran Naftelberg, Ignacio E Schor, Gil Ast, Alberto R Kornblihtt. Annu Rev Biochem 2015
268
25

CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.
Sanjeev Shukla, Ersen Kavak, Melissa Gregory, Masahiko Imashimizu, Bojan Shutinoski, Mikhail Kashlev, Philipp Oberdoerffer, Rickard Sandberg, Shalini Oberdoerffer. Nature 2011
672
25

The spliceosome: design principles of a dynamic RNP machine.
Markus C Wahl, Cindy L Will, Reinhard Lührmann. Cell 2009
25

Splicing and transcription touch base: co-transcriptional spliceosome assembly and function.
Lydia Herzel, Diana S M Ottoz, Tara Alpert, Karla M Neugebauer. Nat Rev Mol Cell Biol 2017
169
25

Structure of a transcribing RNA polymerase II-U1 snRNP complex.
Suyang Zhang, Shintaro Aibara, Seychelle M Vos, Dmitry E Agafonov, Reinhard Lührmann, Patrick Cramer. Science 2021
32
25


Writing a wrong: Coupled RNA polymerase II transcription and RNA quality control.
Sarah A Peck, Katlyn D Hughes, Jose F Victorino, Amber L Mosley. Wiley Interdiscip Rev RNA 2019
22
25


Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution.
Andreas Mayer, Julia di Iulio, Seth Maleri, Umut Eser, Jeff Vierstra, Alex Reynolds, Richard Sandstrom, John A Stamatoyannopoulos, L Stirling Churchman. Cell 2015
218
25

The RNA polymerase II carboxy-terminal domain (CTD) code.
Dirk Eick, Matthias Geyer. Chem Rev 2013
271
25

Coupling of RNA Polymerase II Transcription Elongation with Pre-mRNA Splicing.
Tassa Saldi, Michael A Cortazar, Ryan M Sheridan, David L Bentley. J Mol Biol 2016
143
25

Co-transcriptional splicing and the CTD code.
Noélia Custódio, Maria Carmo-Fonseca. Crit Rev Biochem Mol Biol 2016
30
25

Pre-mRNA splicing is facilitated by an optimal RNA polymerase II elongation rate.
Nova Fong, Hyunmin Kim, Yu Zhou, Xiong Ji, Jinsong Qiu, Tassa Saldi, Katrina Diener, Ken Jones, Xiang-Dong Fu, David L Bentley. Genes Dev 2014
164
25

Spliceosome structure and function.
Cindy L Will, Reinhard Lührmann. Cold Spring Harb Perspect Biol 2011
956
16

Characterization and kinetics of synthesis of 15S beta-globin RNA, a putative precursor of beta-globin mRNA.
P J Curtis, N Mantei, C Weissmann. Cold Spring Harb Symp Quant Biol 1978
29
16



Comprehensive RNA Polymerase II Interactomes Reveal Distinct and Varied Roles for Each Phospho-CTD Residue.
Kevin M Harlen, Kristine L Trotta, Erin E Smith, Mohammad M Mosaheb, Stephen M Fuchs, L Stirling Churchman. Cell Rep 2016
79
16

The RNA polymerase II C-terminal domain promotes splicing activation through recruitment of a U2AF65-Prp19 complex.
Charles J David, Alex R Boyne, Scott R Millhouse, James L Manley. Genes Dev 2011
123
16

The C-terminal domain of the largest subunit of RNA polymerase II interacts with a novel set of serine/arginine-rich proteins.
A Yuryev, M Patturajan, Y Litingtung, R V Joshi, C Gentile, M Gebara, J L Corden. Proc Natl Acad Sci U S A 1996
299
16


Exon definition may facilitate splice site selection in RNAs with multiple exons.
B L Robberson, G J Cote, S M Berget. Mol Cell Biol 1990
616
16


Co-transcriptional commitment to alternative splice site selection.
G C Roberts, C Gooding, H Y Mak, N J Proudfoot, C W Smith. Nucleic Acids Res 1998
150
16

CRE promoter sites modulate alternative splicing via p300-mediated histone acetylation.
Eva Dušková, Jarmila Hnilicová, David Staněk. RNA Biol 2014
13
16

Multiple links between transcription and splicing.
Alberto R Kornblihtt, Manuel de la Mata, Juan Pablo Fededa, Manuel J Munoz, Guadalupe Nogues. RNA 2004
361
16

Functional association between promoter structure and transcript alternative splicing.
P Cramer, C G Pesce, F E Baralle, A R Kornblihtt. Proc Natl Acad Sci U S A 1997
264
16

Regulation of 3D chromatin organization by CTCF.
Jian-Feng Xiang, Victor G Corces. Curr Opin Genet Dev 2021
17
16

Expansion of the eukaryotic proteome by alternative splicing.
Timothy W Nilsen, Brenton R Graveley. Nature 2010
16


TET-catalyzed oxidation of intragenic 5-methylcytosine regulates CTCF-dependent alternative splicing.
Ryan J Marina, David Sturgill, Marc A Bailly, Morgan Thenoz, Garima Varma, Maria F Prigge, Kyster K Nanan, Sanjeev Shukla, Nazmul Haque, Shalini Oberdoerffer. EMBO J 2016
65
16

The evolutionary landscape of alternative splicing in vertebrate species.
Nuno L Barbosa-Morais, Manuel Irimia, Qun Pan, Hui Y Xiong, Serge Gueroussov, Leo J Lee, Valentina Slobodeniuc, Claudia Kutter, Stephen Watt, Recep Colak,[...]. Science 2012
605
16

Combinatorial control of signal-induced exon repression by hnRNP L and PSF.
Alexis A Melton, Jason Jackson, Jiarong Wang, Kristen W Lynch. Mol Cell Biol 2007
63
16




RNA Splicing and Disease: Animal Models to Therapies.
Matías Montes, Brianne L Sanford, Daniel F Comiskey, Dawn S Chandler. Trends Genet 2019
87
16

U2AF-homology motif interactions are required for alternative splicing regulation by SPF45.
Lorenzo Corsini, Sophie Bonnal, Jerome Basquin, Michael Hothorn, Klaus Scheffzek, Juan Valcárcel, Michael Sattler. Nat Struct Mol Biol 2007
124
16

Alternative splicing and evolution: diversification, exon definition and function.
Hadas Keren, Galit Lev-Maor, Gil Ast. Nat Rev Genet 2010
660
16

Promoter-driven splicing regulation in fission yeast.
Alberto Moldón, Jordi Malapeira, Natalia Gabrielli, Madelaine Gogol, Blanca Gómez-Escoda, Tsvetomira Ivanova, Chris Seidel, José Ayté. Nature 2008
65
16

How did alternative splicing evolve?
Gil Ast. Nat Rev Genet 2004
396
16



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.