A citation-based method for searching scientific literature

Jianshu Wang, Hong Cheng. Essays Biochem 2020
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Pervasive Chromatin-RNA Binding Protein Interactions Enable RNA-Based Regulation of Transcription.
Rui Xiao, Jia-Yu Chen, Zhengyu Liang, Daji Luo, Geng Chen, Zhi John Lu, Yang Chen, Bing Zhou, Hairi Li, Xian Du,[...]. Cell 2019
80
50


Organization and function of paraspeckles.
Yang Wang, Ling-Ling Chen. Essays Biochem 2020
7
50

The transcriptional landscape of the mammalian genome.
P Carninci, T Kasukawa, S Katayama, J Gough, M C Frith, N Maeda, R Oyama, T Ravasi, B Lenhard, C Wells,[...]. Science 2005
50

Plant 22-nt siRNAs mediate translational repression and stress adaptation.
Huihui Wu, Bosheng Li, Hiro-Oki Iwakawa, Yajie Pan, Xianli Tang, Qianyan Ling-Hu, Yuelin Liu, Shixin Sheng, Li Feng, Hong Zhang,[...]. Nature 2020
27
50

Processing of coding and non-coding RNAs in plant development and environmental responses.
Fuyan Si, Xiaofeng Cao, Xianwei Song, Xian Deng. Essays Biochem 2020
1
100

Role of RNA structure in regulating pre-mRNA splicing.
M Bryan Warf, J Andrew Berglund. Trends Biochem Sci 2010
187
50

Research progress of long noncoding RNA in China.
Yu-Hang Xing, Zhiqiang Bai, Chu-Xiao Liu, Shi-Bin Hu, Meihua Ruan, Ling-Ling Chen. IUBMB Life 2016
27
50

Widespread transcription at neuronal activity-regulated enhancers.
Tae-Kyung Kim, Martin Hemberg, Jesse M Gray, Allen M Costa, Daniel M Bear, Jing Wu, David A Harmin, Mike Laptewicz, Kellie Barbara-Haley, Scott Kuersten,[...]. Nature 2010
50

A large fraction of extragenic RNA pol II transcription sites overlap enhancers.
Francesca De Santa, Iros Barozzi, Flore Mietton, Serena Ghisletti, Sara Polletti, Betsabeh Khoramian Tusi, Heiko Muller, Jiannis Ragoussis, Chia-Lin Wei, Gioacchino Natoli. PLoS Biol 2010
542
50

Genetic variations associated with long noncoding RNAs.
Jianjun Luo, Runsheng Chen. Essays Biochem 2020
1
100

Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
50


Enhancer RNA: biogenesis, function, and regulation.
Rong Ye, Changchang Cao, Yuanchao Xue. Essays Biochem 2020
5
50

Liquid phase condensation in cell physiology and disease.
Yongdae Shin, Clifford P Brangwynne. Science 2017
50

Post-transcriptional gene regulation by mRNA modifications.
Boxuan Simen Zhao, Ian A Roundtree, Chuan He. Nat Rev Mol Cell Biol 2017
701
50

4
50


SR proteins collaborate with 7SK and promoter-associated nascent RNA to release paused polymerase.
Xiong Ji, Yu Zhou, Shatakshi Pandit, Jie Huang, Hairi Li, Charles Y Lin, Rui Xiao, Christopher B Burge, Xiang-Dong Fu. Cell 2013
204
50

The mRNA Export Receptor NXF1 Coordinates Transcriptional Dynamics, Alternative Polyadenylation, and mRNA Export.
Suli Chen, Ruijia Wang, Dinghai Zheng, Heng Zhang, Xingya Chang, Ke Wang, Wencheng Li, Jing Fan, Bin Tian, Hong Cheng. Mol Cell 2019
20
50

microRNA regulation of pluripotent state transition.
Shao-Hua Wang, Chao Zhang, Yangming Wang. Essays Biochem 2020
1
100


Antibody-free enzyme-assisted chemical approach for detection of N6-methyladenosine.
Ye Wang, Yu Xiao, Shunqing Dong, Qiong Yu, Guifang Jia. Nat Chem Biol 2020
42
50

RIC-seq for global in situ profiling of RNA-RNA spatial interactions.
Zhaokui Cai, Changchang Cao, Lei Ji, Rong Ye, Di Wang, Cong Xia, Sui Wang, Zongchang Du, Naijing Hu, Xiaohua Yu,[...]. Nature 2020
54
50


Building robust transcriptomes with master splicing factors.
Mohini Jangi, Phillip A Sharp. Cell 2014
93
50

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
50

Noncoding RNA: from dark matter to bright star.
Yuanchao Xue, Runsheng Chen, Lianghu Qu, Xiaofeng Cao. Sci China Life Sci 2020
10
50

Mammalian NET-Seq Reveals Genome-wide Nascent Transcription Coupled to RNA Processing.
Takayuki Nojima, Tomás Gomes, Ana Rita Fialho Grosso, Hiroshi Kimura, Michael J Dye, Somdutta Dhir, Maria Carmo-Fonseca, Nicholas J Proudfoot. Cell 2015
277
50

Dealing with pervasive transcription.
Torben Heick Jensen, Alain Jacquier, Domenico Libri. Mol Cell 2013
174
50

Dynamic RNA Modifications in Gene Expression Regulation.
Ian A Roundtree, Molly E Evans, Tao Pan, Chuan He. Cell 2017
951
50

Surveillance-ready transcription: nuclear RNA decay as a default fate.
Stefan Bresson, David Tollervey. Open Biol 2018
30
50

Targeting RNA structures in diseases with small molecules.
Yanqiu Shao, Qiangfeng Cliff Zhang. Essays Biochem 2020
5
50

Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution.
Andreas Mayer, Julia di Iulio, Seth Maleri, Umut Eser, Jeff Vierstra, Alex Reynolds, Richard Sandstrom, John A Stamatoyannopoulos, L Stirling Churchman. Cell 2015
198
50

RNA folding during transcription.
Tao Pan, Tobin Sosnick. Annu Rev Biophys Biomol Struct 2006
156
50


Impact of poly(A)-tail G-content on Arabidopsis PAB binding and their role in enhancing translational efficiency.
Taolan Zhao, Qing Huan, Jing Sun, Chunyan Liu, Xiuli Hou, Xiang Yu, Ian M Silverman, Yi Zhang, Brian D Gregory, Chun-Ming Liu,[...]. Genome Biol 2019
18
50

RNA structure maps across mammalian cellular compartments.
Lei Sun, Furqan M Fazal, Pan Li, James P Broughton, Byron Lee, Lei Tang, Wenze Huang, Eric T Kool, Howard Y Chang, Qiangfeng Cliff Zhang. Nat Struct Mol Biol 2019
73
50

A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins.
Jie Wang, Jeong-Mo Choi, Alex S Holehouse, Hyun O Lee, Xiaojie Zhang, Marcus Jahnel, Shovamayee Maharana, Régis Lemaitre, Andrei Pozniakovsky, David Drechsel,[...]. Cell 2018
522
50

Dynamic Imaging of RNA in Living Cells by CRISPR-Cas13 Systems.
Liang-Zhong Yang, Yang Wang, Si-Qi Li, Run-Wen Yao, Peng-Fei Luan, Huang Wu, Gordon G Carmichael, Ling-Ling Chen. Mol Cell 2019
84
50

Controlling nuclear RNA levels.
Manfred Schmid, Torben Heick Jensen. Nat Rev Genet 2018
53
50

Dynamic transcriptomic m6A decoration: writers, erasers, readers and functions in RNA metabolism.
Ying Yang, Phillip J Hsu, Yu-Sheng Chen, Yun-Gui Yang. Cell Res 2018
349
50

Rapid, diffusional shuttling of poly(A) RNA between nuclear speckles and the nucleoplasm.
Joan C Ritland Politz, Richard A Tuft, Kannanganattu V Prasanth, Nina Baudendistel, Kevin E Fogarty, Larry M Lifshitz, Jörg Langowski, David L Spector, Thoru Pederson. Mol Biol Cell 2006
67
50

SON and SRRM2 are essential for nuclear speckle formation.
İbrahim Avşar Ilik, Michal Malszycki, Anna Katharina Lübke, Claudia Schade, David Meierhofer, Tuğçe Aktaş. Elife 2020
16
50

Intron retention is a source of neoepitopes in cancer.
Alicia C Smart, Claire A Margolis, Harold Pimentel, Meng Xiao He, Diana Miao, Dennis Adeegbe, Tim Fugmann, Kwok-Kin Wong, Eliezer M Van Allen. Nat Biotechnol 2018
95
50


The U6 snRNA m6A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention.
Kathryn E Pendleton, Beibei Chen, Kuanqing Liu, Olga V Hunter, Yang Xie, Benjamin P Tu, Nicholas K Conrad. Cell 2017
349
50

RNAs as Proximity-Labeling Media for Identifying Nuclear Speckle Positions Relative to the Genome.
Weizhong Chen, Zhangming Yan, Simin Li, Norman Huang, Xuerui Huang, Jin Zhang, Sheng Zhong. iScience 2018
16
50

Sumoylation and transcription regulation at nuclear pores.
Lorane Texari, Françoise Stutz. Chromosoma 2015
14
50

The changing paradigm of intron retention: regulation, ramifications and recipes.
Geoffray Monteuuis, Justin J L Wong, Charles G Bailey, Ulf Schmitz, John E J Rasko. Nucleic Acids Res 2019
33
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.