A citation-based method for searching scientific literature

Anna C McCarter, Giusy Della Gatta, Ashley Melnick, Erin Kim, Cher Sha, Qing Wang, Jahnavi K Nalamolu, Yiran Liu, Theresa M Keeley, Ran Yan, Mengxi Sun, Rohan Kodgule, Nicholas Kunnath, Alberto Ambesi-Impiombato, Rork Kuick, Arvind Rao, Russell J H Ryan, Barbara L Kee, Linda C Samuelson, Michael C Ostrowski, Adolfo A Ferrando, Mark Y Chiang. Blood Cancer Discov 2020
Times Cited: 3







List of co-cited articles
6 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Three-dimensional chromatin landscapes in T cell acute lymphoblastic leukemia.
Andreas Kloetgen, Palaniraja Thandapani, Panagiotis Ntziachristos, Yohana Ghebrechristos, Sofia Nomikou, Charalampos Lazaris, Xufeng Chen, Hai Hu, Sofia Bakogianni, Jingjing Wang,[...]. Nat Genet 2020
30
66

Noncoding Variants Connect Enhancer Dysregulation with Nuclear Receptor Signaling in Hematopoietic Malignancies.
Kailong Li, Yuannyu Zhang, Xin Liu, Yuxuan Liu, Zhimin Gu, Hui Cao, Kathryn E Dickerson, Mingyi Chen, Weina Chen, Zhen Shao,[...]. Cancer Discov 2020
10
66

Dynamic Control of Enhancer Repertoires Drives Lineage and Stage-Specific Transcription during Hematopoiesis.
Jialiang Huang, Xin Liu, Dan Li, Zhen Shao, Hui Cao, Yuannyu Zhang, Eirini Trompouki, Teresa V Bowman, Leonard I Zon, Guo-Cheng Yuan,[...]. Dev Cell 2016
130
66

Targeting transcription regulation in cancer with a covalent CDK7 inhibitor.
Nicholas Kwiatkowski, Tinghu Zhang, Peter B Rahl, Brian J Abraham, Jessica Reddy, Scott B Ficarro, Anahita Dastur, Arnaud Amzallag, Sridhar Ramaswamy, Bethany Tesar,[...]. Nature 2014
439
66

BET bromodomain inhibition targets both c-Myc and IL7R in high-risk acute lymphoblastic leukemia.
Christopher J Ott, Nadja Kopp, Liat Bird, Ronald M Paranal, Jun Qi, Teresa Bowman, Scott J Rodig, Andrew L Kung, James E Bradner, David M Weinstock. Blood 2012
279
66

NOTCH1 directly regulates c-MYC and activates a feed-forward-loop transcriptional network promoting leukemic cell growth.
Teresa Palomero, Wei Keat Lim, Duncan T Odom, Maria Luisa Sulis, Pedro J Real, Adam Margolin, Kelly C Barnes, Jennifer O'Neil, Donna Neuberg, Andrew P Weng,[...]. Proc Natl Acad Sci U S A 2006
581
66

Lymphocyte-Specific Chromatin Accessibility Pre-determines Glucocorticoid Resistance in Acute Lymphoblastic Leukemia.
Duohui Jing, Yizhou Huang, Xiaoyun Liu, Keith C S Sia, Julia C Zhang, Xiaolu Tai, Meng Wang, Cara E Toscan, Hannah McCalmont, Kathryn Evans,[...]. Cancer Cell 2018
31
33


A Myc enhancer cluster regulates normal and leukaemic haematopoietic stem cell hierarchies.
Carsten Bahr, Lisa von Paleske, Veli V Uslu, Silvia Remeseiro, Naoya Takayama, Stanley W Ng, Alex Murison, Katja Langenfeld, Massimo Petretich, Roberta Scognamiglio,[...]. Nature 2018
124
33

ARID5B as a critical downstream target of the TAL1 complex that activates the oncogenic transcriptional program and promotes T-cell leukemogenesis.
Wei Zhong Leong, Shi Hao Tan, Phuong Cao Thi Ngoc, Stella Amanda, Alice Wei Yee Yam, Wei-Siang Liau, Zhiyuan Gong, Lee N Lawton, Daniel G Tenen, Takaomi Sanda. Genes Dev 2017
28
33

Cell type-specific actions of Bcl11b in early T-lineage and group 2 innate lymphoid cells.
Hiroyuki Hosokawa, Maile Romero-Wolf, Qi Yang, Yasutaka Motomura, Ditsa Levanon, Yoram Groner, Kazuyo Moro, Tomoaki Tanaka, Ellen V Rothenberg. J Exp Med 2020
24
33


Diversity and Emerging Roles of Enhancer RNA in Regulation of Gene Expression and Cell Fate.
Preston R Arnold, Andrew D Wells, Xian C Li. Front Cell Dev Biol 2020
42
33

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
33

Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity.
Xingqi Chen, Ulrike M Litzenburger, Yuning Wei, Alicia N Schep, Edward L LaGory, Hani Choudhry, Amato J Giaccia, William J Greenleaf, Howard Y Chang. Nat Commun 2018
26
33

Discovery of proteins associated with a predefined genomic locus via dCas9-APEX-mediated proximity labeling.
Samuel A Myers, Jason Wright, Ryan Peckner, Brian T Kalish, Feng Zhang, Steven A Carr. Nat Methods 2018
81
33

Non-coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate.
Takeshi Isoda, Amanda J Moore, Zhaoren He, Vivek Chandra, Masatoshi Aida, Matthew Denholtz, Jan Piet van Hamburg, Kathleen M Fisch, Aaron N Chang, Shawn P Fahl,[...]. Cell 2017
120
33

The role of enhancers in cancer.
Inderpreet Sur, Jussi Taipale. Nat Rev Cancer 2016
167
33


Site- and allele-specific polycomb dysregulation in T-cell leukaemia.
Jean-Marc Navarro, Aurore Touzart, Lydie C Pradel, Marie Loosveld, Myriam Koubi, Romain Fenouil, Sandrine Le Noir, Muhammad Ahmad Maqbool, Ester Morgado, Claude Gregoire,[...]. Nat Commun 2015
34
33

RNA Binding to CBP Stimulates Histone Acetylation and Transcription.
Daniel A Bose, Greg Donahue, Danny Reinberg, Ramin Shiekhattar, Roberto Bonasio, Shelley L Berger. Cell 2017
166
33

Evolution of the Epigenetic Landscape in Childhood B Acute Lymphoblastic Leukemia and Its Role in Drug Resistance.
Shella Saint Fleur-Lominy, Nikki A Evensen, Teena Bhatla, Gunjan Sethia, Sonali Narang, Jun H Choi, Xiaotu Ma, Jun J Yang, Stephen Kelly, Elizabeth Raetz,[...]. Cancer Res 2020
3
33

Glucocorticoid use in acute lymphoblastic leukaemia.
Hiroto Inaba, Ching-Hon Pui. Lancet Oncol 2010
188
33

The enhancer RNA ARIEL activates the oncogenic transcriptional program in T-cell acute lymphoblastic leukemia.
Shi Hao Tan, Wei Zhong Leong, Phuong Cao Thi Ngoc, Tze King Tan, Fatima Carla Bertulfo, Mei Chee Lim, Omer An, Zhenhua Li, Allen Eng Juh Yeoh, Melissa J Fullwood,[...]. Blood 2019
23
33


In Situ Capture of Chromatin Interactions by Biotinylated dCas9.
Xin Liu, Yuannyu Zhang, Yong Chen, Mushan Li, Feng Zhou, Kailong Li, Hui Cao, Min Ni, Yuxuan Liu, Zhimin Gu,[...]. Cell 2017
146
33

The Leukemogenic TCF3-HLF Complex Rewires Enhancers Driving Cellular Identity and Self-Renewal Conferring EP300 Vulnerability.
Yun Huang, Brice Mouttet, Hans-Jörg Warnatz, Thomas Risch, Fabian Rietmann, Fabian Frommelt, Quy A Ngo, Maria Pamela Dobay, Blerim Marovca, Silvia Jenni,[...]. Cancer Cell 2019
12
33

Immunogenetics. Chromatin state dynamics during blood formation.
David Lara-Astiaso, Assaf Weiner, Erika Lorenzo-Vivas, Irina Zaretsky, Diego Adhemar Jaitin, Eyal David, Hadas Keren-Shaul, Alexander Mildner, Deborah Winter, Steffen Jung,[...]. Science 2014
477
33

Histone replacement marks the boundaries of cis-regulatory domains.
Yoshiko Mito, Jorja G Henikoff, Steven Henikoff. Science 2007
208
33

Developmental gene networks: a triathlon on the course to T cell identity.
Mary A Yui, Ellen V Rothenberg. Nat Rev Immunol 2014
182
33

Asynchronous combinatorial action of four regulatory factors activates Bcl11b for T cell commitment.
Hao Yuan Kueh, Mary A Yui, Kenneth K H Ng, Shirley S Pease, Jingli A Zhang, Sagar S Damle, George Freedman, Sharmayne Siu, Irwin D Bernstein, Michael B Elowitz,[...]. Nat Immunol 2016
78
33

Purification of proteins associated with specific genomic Loci.
Jérôme Déjardin, Robert E Kingston. Cell 2009
349
33

Distinct and temporary-restricted epigenetic mechanisms regulate human αβ and γδ T cell development.
Juliette Roels, Anna Kuchmiy, Matthias De Decker, Steven Strubbe, Marieke Lavaert, Kai Ling Liang, Georges Leclercq, Bart Vandekerckhove, Filip Van Nieuwerburgh, Pieter Van Vlierberghe,[...]. Nat Immunol 2020
16
33


Role of SWI/SNF in acute leukemia maintenance and enhancer-mediated Myc regulation.
Junwei Shi, Warren A Whyte, Cinthya J Zepeda-Mendoza, Joseph P Milazzo, Chen Shen, Jae-Seok Roe, Jessica L Minder, Fatih Mercan, Eric Wang, Melanie A Eckersley-Maslin,[...]. Genes Dev 2013
273
33

NOTCH1-RBPJ complexes drive target gene expression through dynamic interactions with superenhancers.
Hongfang Wang, Chongzhi Zang, Len Taing, Kelly L Arnett, Yinling Joey Wong, Warren S Pear, Stephen C Blacklow, X Shirley Liu, Jon C Aster. Proc Natl Acad Sci U S A 2014
143
33

Pioneer transcription factors, chromatin dynamics, and cell fate control.
Kenneth S Zaret, Susan E Mango. Curr Opin Genet Dev 2016
196
33

Cooperative Enhancer Activation by TLX1 and STAT5 Drives Development of NUP214-ABL1/TLX1-Positive T Cell Acute Lymphoblastic Leukemia.
Marlies Vanden Bempt, Sofie Demeyer, Michaël Broux, Jolien De Bie, Simon Bornschein, Nicole Mentens, Roel Vandepoel, Ellen Geerdens, Enrico Radaelli, Beat C Bornhauser,[...]. Cancer Cell 2018
23
33

A NOTCH1-driven MYC enhancer promotes T cell development, transformation and acute lymphoblastic leukemia.
Daniel Herranz, Alberto Ambesi-Impiombato, Teresa Palomero, Stephanie A Schnell, Laura Belver, Agnieszka A Wendorff, Luyao Xu, Mireia Castillo-Martin, David Llobet-Navás, Carlos Cordon-Cardo,[...]. Nat Med 2014
233
33

Development of 2 Bromodomain and Extraterminal Inhibitors With Distinct Pharmacokinetic and Pharmacodynamic Profiles for the Treatment of Advanced Malignancies.
Gerald Falchook, Seth Rosen, Patricia LoRusso, Justin Watts, Shilpa Gupta, Catherine C Coombs, Moshe Talpaz, Razelle Kurzrock, Monica Mita, Ryan Cassaday,[...]. Clin Cancer Res 2020
20
33

Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation.
Celestia Fang, Zhenjia Wang, Cuijuan Han, Stephanie L Safgren, Kathryn A Helmin, Emmalee R Adelman, Valentina Serafin, Giuseppe Basso, Kyle P Eagen, Alexandre Gaspar-Maia,[...]. Genome Biol 2020
11
33

Activation of proto-oncogenes by disruption of chromosome neighborhoods.
Denes Hnisz, Abraham S Weintraub, Daniel S Day, Anne-Laure Valton, Rasmus O Bak, Charles H Li, Johanna Goldmann, Bryan R Lajoie, Zi Peng Fan, Alla A Sigova,[...]. Science 2016
469
33

3D Chromosome Regulatory Landscape of Human Pluripotent Cells.
Xiong Ji, Daniel B Dadon, Benjamin E Powell, Zi Peng Fan, Diego Borges-Rivera, Sigal Shachar, Abraham S Weintraub, Denes Hnisz, Gianluca Pegoraro, Tong Ihn Lee,[...]. Cell Stem Cell 2016
216
33

Activating RNAs associate with Mediator to enhance chromatin architecture and transcription.
Fan Lai, Ulf A Orom, Matteo Cesaroni, Malte Beringer, Dylan J Taatjes, Gerd A Blobel, Ramin Shiekhattar. Nature 2013
570
33

Chromatin accessibility and the regulatory epigenome.
Sandy L Klemm, Zohar Shipony, William J Greenleaf. Nat Rev Genet 2019
320
33

New dimension of glucocorticoids in cancer treatment.
Kai-Ti Lin, Lu-Hai Wang. Steroids 2016
100
33

Whole-genome noncoding sequence analysis in T-cell acute lymphoblastic leukemia identifies oncogene enhancer mutations.
Shaoyan Hu, Maoxiang Qian, Hui Zhang, Yu Guo, Jin Yang, Xujie Zhao, Hailong He, Jun Lu, Jian Pan, Meimei Chang,[...]. Blood 2017
19
33

Role of non-coding sequence variants in cancer.
Ekta Khurana, Yao Fu, Dimple Chakravarty, Francesca Demichelis, Mark A Rubin, Mark Gerstein. Nat Rev Genet 2016
251
33

Modification of enhancer chromatin: what, how, and why?
Eliezer Calo, Joanna Wysocka. Mol Cell 2013
753
33

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.