A citation-based method for searching scientific literature

Xiaoqing Yu, Farnoosh Abbas-Aghababazadeh, Y Ann Chen, Brooke L Fridley. Methods Mol Biol 2021
Times Cited: 2







List of co-cited articles
2 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


xCell: digitally portraying the tissue cellular heterogeneity landscape.
Dvir Aran, Zicheng Hu, Atul J Butte. Genome Biol 2017
952
100

Spatially Resolved Transcriptomics Enables Dissection of Genetic Heterogeneity in Stage III Cutaneous Malignant Melanoma.
Kim Thrane, Hanna Eriksson, Jonas Maaskola, Johan Hansson, Joakim Lundeberg. Cancer Res 2018
82
100

A Zero-inflated Beta-binomial Model for Microbiome Data Analysis.
Tao Hu, Paul Gallins, Yi-Hui Zhou. Stat (Int Stat Inst) 2018
5
50

Methods for diversity and overlap analysis in T-cell receptor populations.
Grzegorz A Rempala, Michal Seweryn. J Math Biol 2013
59
50

Multiplex immunofluorescence to measure dynamic changes in tumor-infiltrating lymphocytes and PD-L1 in early-stage breast cancer.
Katherine Sanchez, Isaac Kim, Brie Chun, Joanna Pucilowska, William L Redmond, Walter J Urba, Maritza Martel, Yaping Wu, Mary Campbell, Zhaoyu Sun,[...]. Breast Cancer Res 2021
12
50

Overview of multiplex immunohistochemistry/immunofluorescence techniques in the era of cancer immunotherapy.
Wei Chang Colin Tan, Sanjna Nilesh Nerurkar, Hai Yun Cai, Harry Ho Man Ng, Duoduo Wu, Yu Ting Felicia Wee, Jeffrey Chun Tatt Lim, Joe Yeong, Tony Kiat Hon Lim. Cancer Commun (Lond) 2020
78
50

American Society of Clinical Oncology/College Of American Pathologists guideline recommendations for immunohistochemical testing of estrogen and progesterone receptors in breast cancer.
M Elizabeth H Hammond, Daniel F Hayes, Mitch Dowsett, D Craig Allred, Karen L Hagerty, Sunil Badve, Patrick L Fitzgibbons, Glenn Francis, Neil S Goldstein, Malcolm Hayes,[...]. J Clin Oncol 2010
50

Quantitative Analysis of Immune Infiltrates in Primary Melanoma.
Robyn D Gartrell, Douglas K Marks, Thomas D Hart, Gen Li, Danielle R Davari, Alan Wu, Zoë Blake, Yan Lu, Kayleigh N Askin, Anthea Monod,[...]. Cancer Immunol Res 2018
54
50

Macrophage spatial heterogeneity in gastric cancer defined by multiplex immunohistochemistry.
Yu-Kuan Huang, Minyu Wang, Yu Sun, Natasha Di Costanzo, Catherine Mitchell, Adrian Achuthan, John A Hamilton, Rita A Busuttil, Alex Boussioutas. Nat Commun 2019
57
50

Hyperspectral cell sociology reveals spatial tumor-immune cell interactions associated with lung cancer recurrence.
Katey S S Enfield, Spencer D Martin, Erin A Marshall, Sonia H Y Kung, Paul Gallagher, Katy Milne, Zhaoyang Chen, Brad H Nelson, Stephen Lam, John C English,[...]. J Immunother Cancer 2019
17
50

Assessment of the PD-L1 status by immunohistochemistry: challenges and perspectives for therapeutic strategies in lung cancer patients.
Marius Ilie, Véronique Hofman, Manfred Dietel, Jean-Charles Soria, Paul Hofman. Virchows Arch 2016
169
50

Moderated statistical tests for assessing differences in tag abundance.
Mark D Robinson, Gordon K Smyth. Bioinformatics 2007
507
50

The immune contexture in human tumours: impact on clinical outcome.
Wolf Herman Fridman, Franck Pagès, Catherine Sautès-Fridman, Jérôme Galon. Nat Rev Cancer 2012
50

Mass Cytometry Imaging for the Study of Human Diseases-Applications and Data Analysis Strategies.
Heeva Baharlou, Nicolas P Canete, Anthony L Cunningham, Andrew N Harman, Ellis Patrick. Front Immunol 2019
54
50

Highly multiplexed imaging of tumor tissues with subcellular resolution by mass cytometry.
Charlotte Giesen, Hao A O Wang, Denis Schapiro, Nevena Zivanovic, Andrea Jacobs, Bodo Hattendorf, Peter J Schüffler, Daniel Grolimund, Joachim M Buhmann, Simone Brandt,[...]. Nat Methods 2014
755
50

Predictive correlates of response to the anti-PD-L1 antibody MPDL3280A in cancer patients.
Roy S Herbst, Jean-Charles Soria, Marcin Kowanetz, Gregg D Fine, Omid Hamid, Michael S Gordon, Jeffery A Sosman, David F McDermott, John D Powderly, Scott N Gettinger,[...]. Nature 2014
50

Image analysis for accurately counting CD4+ and CD8+ T cells in human tissue.
Kurt Diem, Amalia Magaret, Alexis Klock, Lei Jin, Jia Zhu, Lawrence Corey. J Virol Methods 2015
16
50

Reporting and methods in clinical prediction research: a systematic review.
Walter Bouwmeester, Nicolaas P A Zuithoff, Susan Mallett, Mirjam I Geerlings, Yvonne Vergouwe, Ewout W Steyerberg, Douglas G Altman, Karel G M Moons. PLoS Med 2012
315
50


Tumor immune infiltration estimated from gene expression profiles predicts colorectal cancer relapse.
Yasmin Kamal, Dennis Dwan, Hannah J Hoehn, Rebeca Sanz-Pamplona, M Henar Alonso, Victor Moreno, Chao Cheng, Michael J Schell, Youngchul Kim, Seth I Felder,[...]. Oncoimmunology 2021
3
50

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
50


Multispectral imaging for quantitative and compartment-specific immune infiltrates reveals distinct immune profiles that classify lung cancer patients.
Artur Mezheyeuski, Christian Holst Bergsland, Max Backman, Dijana Djureinovic, Tobias Sjöblom, Jarle Bruun, Patrick Micke. J Pathol 2018
83
50

Multiplex immunohistochemistry/immunofluorescence (mIHC/IF) for PD-L1 testing in triple-negative breast cancer: a translational assay compared with conventional IHC.
Joe Yeong, Tira Tan, Zi Long Chow, Qing Cheng, Bernett Lee, Amanda Seet, Johnathan Xiande Lim, Jeffrey Chun Tatt Lim, Clara Chong Hui Ong, Aye Aye Thike,[...]. J Clin Pathol 2020
21
50


The Validation of a Beta-Binomial Model for Overdispersed Binomial Data.
Jongphil Kim, Ji-Hyun Lee. Commun Stat Simul Comput 2017
1
100

What does PD-L1 positive or negative mean?
Antoni Ribas, Siwen Hu-Lieskovan. J Exp Med 2016
172
50

Advances in Cancer Immunotherapy in Solid Tumors.
Smitha Menon, Sarah Shin, Grace Dy. Cancers (Basel) 2016
94
50

Beta-binomial modeling of CRISPR pooled screen data identifies target genes with greater sensitivity and fewer false negatives.
Hyun-Hwan Jeong, Seon Young Kim, Maxime W C Rousseaux, Huda Y Zoghbi, Zhandong Liu. Genome Res 2019
17
50

Digital microscopy: past, present, and future.
Cyrus V Hedvat. Arch Pathol Lab Med 2010
56
50


Single-cell transcriptomic analysis of mIHC images via antigen mapping.
Kiya W Govek, Emma C Troisi, Zhen Miao, Rachael G Aubin, Steven Woodhouse, Pablo G Camara. Sci Adv 2021
13
50

MODELING MICROBIAL ABUNDANCES AND DYSBIOSIS WITH BETA-BINOMIAL REGRESSION.
Bryan D Martin, Daniela Witten, Amy D Willis. Ann Appl Stat 2020
51
50

The Society for Immunotherapy of Cancer statement on best practices for multiplex immunohistochemistry (IHC) and immunofluorescence (IF) staining and validation.
Janis M Taube, Guray Akturk, Michael Angelo, Elizabeth L Engle, Sacha Gnjatic, Shirley Greenbaum, Noah F Greenwald, Cyrus V Hedvat, Travis J Hollmann, Jonathan Juco,[...]. J Immunother Cancer 2020
52
50

Cancer immunotherapy: Opportunities and challenges in the rapidly evolving clinical landscape.
Leisha A Emens, Paolo A Ascierto, Phillip K Darcy, Sandra Demaria, Alexander M M Eggermont, William L Redmond, Barbara Seliger, Francesco M Marincola. Eur J Cancer 2017
266
50

Combining multiple spatial statistics enhances the description of immune cell localisation within tumours.
Joshua A Bull, Philip S Macklin, Tom Quaiser, Franziska Braun, Sarah L Waters, Chris W Pugh, Helen M Byrne. Sci Rep 2020
3
50


A Bayesian zero-inflated negative binomial regression model for the integrative analysis of microbiome data.
Shuang Jiang, Guanghua Xiao, Andrew Y Koh, Jiwoong Kim, Qiwei Li, Xiaowei Zhan. Biostatistics 2021
3
50

Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity.
Emelie Berglund, Jonas Maaskola, Niklas Schultz, Stefanie Friedrich, Maja Marklund, Joseph Bergenstråhle, Firas Tarish, Anna Tanoglidi, Sanja Vickovic, Ludvig Larsson,[...]. Nat Commun 2018
151
50

Digital imaging in pathology: whole-slide imaging and beyond.
Farzad Ghaznavi, Andrew Evans, Anant Madabhushi, Michael Feldman. Annu Rev Pathol 2013
169
50

The prognostic influence of tumour-infiltrating lymphocytes in cancer: a systematic review with meta-analysis.
M J M Gooden, G H de Bock, N Leffers, T Daemen, H W Nijman. Br J Cancer 2011
760
50

Distinguishing between mechanisms of cell aggregation using pair-correlation functions.
D J G Agnew, J E F Green, T M Brown, M J Simpson, B J Binder. J Theor Biol 2014
31
50

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
50

Ki67 reproducibility using digital image analysis: an inter-platform and inter-operator study.
Balazs Acs, Vasiliki Pelekanou, Yalai Bai, Sandra Martinez-Morilla, Maria Toki, Samuel C Y Leung, Torsten O Nielsen, David L Rimm. Lab Invest 2019
50
50

Dietary Protein Intake and Early Menopause in the Nurses' Health Study II.
Maegan E Boutot, Alexandra Purdue-Smithe, Brian W Whitcomb, Kathleen L Szegda, JoAnn E Manson, Susan E Hankinson, Bernard A Rosner, Elizabeth R Bertone-Johnson. Am J Epidemiol 2018
16
50

Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq.
Itay Tirosh, Benjamin Izar, Sanjay M Prakadan, Marc H Wadsworth, Daniel Treacy, John J Trombetta, Asaf Rotem, Christopher Rodman, Christine Lian, George Murphy,[...]. Science 2016
50

Patterns of TIGIT Expression in Lymphatic Tissue, Inflammation, and Cancer.
Niclas C Blessin, Ronald Simon, Martina Kluth, Kristine Fischer, Claudia Hube-Magg, Wenchao Li, Georgia Makrypidi-Fraune, Björn Wellge, Tim Mandelkow, Nicolaus F Debatin,[...]. Dis Markers 2019
30
50


Validation of multiplex immunofluorescence panels using multispectral microscopy for immune-profiling of formalin-fixed and paraffin-embedded human tumor tissues.
Edwin R Parra, Naohiro Uraoka, Mei Jiang, Pamela Cook, Don Gibbons, Marie-Andrée Forget, Chantale Bernatchez, Cara Haymaker, Ignacio I Wistuba, Jaime Rodriguez-Canales. Sci Rep 2017
123
50

Nurses' Health Study Contributions on the Epidemiology of Less Common Cancers: Endometrial, Ovarian, Pancreatic, and Hematologic.
Brenda M Birmann, Mollie E Barnard, Kimberly A Bertrand, Ying Bao, Marta Crous-Bou, Brian M Wolpin, Immaculata De Vivo, Shelley S Tworoger. Am J Public Health 2016
11
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.