Xiaoqing Yu, Farnoosh Abbas-Aghababazadeh, Y Ann Chen, Brooke L Fridley. Methods Mol Biol 2021
Times Cited: 2
Times Cited: 2
Times Cited
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Similarity
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Dvir Aran, Zicheng Hu, Atul J Butte. Genome Biol 2017
100
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Kim Thrane, Hanna Eriksson, Jonas Maaskola, Johan Hansson, Joakim Lundeberg. Cancer Res 2018
Kim Thrane, Hanna Eriksson, Jonas Maaskola, Johan Hansson, Joakim Lundeberg. Cancer Res 2018
100
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Tao Hu, Paul Gallins, Yi-Hui Zhou. Stat (Int Stat Inst) 2018
Tao Hu, Paul Gallins, Yi-Hui Zhou. Stat (Int Stat Inst) 2018
50
Methods for diversity and overlap analysis in T-cell receptor populations.
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Grzegorz A Rempala, Michal Seweryn. J Math Biol 2013
50
Multiplex immunofluorescence to measure dynamic changes in tumor-infiltrating lymphocytes and PD-L1 in early-stage breast cancer.
Katherine Sanchez, Isaac Kim, Brie Chun, Joanna Pucilowska, William L Redmond, Walter J Urba, Maritza Martel, Yaping Wu, Mary Campbell, Zhaoyu Sun,[...]. Breast Cancer Res 2021
Katherine Sanchez, Isaac Kim, Brie Chun, Joanna Pucilowska, William L Redmond, Walter J Urba, Maritza Martel, Yaping Wu, Mary Campbell, Zhaoyu Sun,[...]. Breast Cancer Res 2021
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Wei Chang Colin Tan, Sanjna Nilesh Nerurkar, Hai Yun Cai, Harry Ho Man Ng, Duoduo Wu, Yu Ting Felicia Wee, Jeffrey Chun Tatt Lim, Joe Yeong, Tony Kiat Hon Lim. Cancer Commun (Lond) 2020
50
American Society of Clinical Oncology/College Of American Pathologists guideline recommendations for immunohistochemical testing of estrogen and progesterone receptors in breast cancer.
M Elizabeth H Hammond, Daniel F Hayes, Mitch Dowsett, D Craig Allred, Karen L Hagerty, Sunil Badve, Patrick L Fitzgibbons, Glenn Francis, Neil S Goldstein, Malcolm Hayes,[...]. J Clin Oncol 2010
M Elizabeth H Hammond, Daniel F Hayes, Mitch Dowsett, D Craig Allred, Karen L Hagerty, Sunil Badve, Patrick L Fitzgibbons, Glenn Francis, Neil S Goldstein, Malcolm Hayes,[...]. J Clin Oncol 2010
50
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Robyn D Gartrell, Douglas K Marks, Thomas D Hart, Gen Li, Danielle R Davari, Alan Wu, Zoë Blake, Yan Lu, Kayleigh N Askin, Anthea Monod,[...]. Cancer Immunol Res 2018
Robyn D Gartrell, Douglas K Marks, Thomas D Hart, Gen Li, Danielle R Davari, Alan Wu, Zoë Blake, Yan Lu, Kayleigh N Askin, Anthea Monod,[...]. Cancer Immunol Res 2018
50
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Yu-Kuan Huang, Minyu Wang, Yu Sun, Natasha Di Costanzo, Catherine Mitchell, Adrian Achuthan, John A Hamilton, Rita A Busuttil, Alex Boussioutas. Nat Commun 2019
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50
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Katey S S Enfield, Spencer D Martin, Erin A Marshall, Sonia H Y Kung, Paul Gallagher, Katy Milne, Zhaoyang Chen, Brad H Nelson, Stephen Lam, John C English,[...]. J Immunother Cancer 2019
Katey S S Enfield, Spencer D Martin, Erin A Marshall, Sonia H Y Kung, Paul Gallagher, Katy Milne, Zhaoyang Chen, Brad H Nelson, Stephen Lam, John C English,[...]. J Immunother Cancer 2019
50
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Marius Ilie, Véronique Hofman, Manfred Dietel, Jean-Charles Soria, Paul Hofman. Virchows Arch 2016
Marius Ilie, Véronique Hofman, Manfred Dietel, Jean-Charles Soria, Paul Hofman. Virchows Arch 2016
50
Moderated statistical tests for assessing differences in tag abundance.
Mark D Robinson, Gordon K Smyth. Bioinformatics 2007
Mark D Robinson, Gordon K Smyth. Bioinformatics 2007
50
The immune contexture in human tumours: impact on clinical outcome.
Wolf Herman Fridman, Franck Pagès, Catherine Sautès-Fridman, Jérôme Galon. Nat Rev Cancer 2012
Wolf Herman Fridman, Franck Pagès, Catherine Sautès-Fridman, Jérôme Galon. Nat Rev Cancer 2012
50
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Heeva Baharlou, Nicolas P Canete, Anthony L Cunningham, Andrew N Harman, Ellis Patrick. Front Immunol 2019
Heeva Baharlou, Nicolas P Canete, Anthony L Cunningham, Andrew N Harman, Ellis Patrick. Front Immunol 2019
50
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Charlotte Giesen, Hao A O Wang, Denis Schapiro, Nevena Zivanovic, Andrea Jacobs, Bodo Hattendorf, Peter J Schüffler, Daniel Grolimund, Joachim M Buhmann, Simone Brandt,[...]. Nat Methods 2014
Charlotte Giesen, Hao A O Wang, Denis Schapiro, Nevena Zivanovic, Andrea Jacobs, Bodo Hattendorf, Peter J Schüffler, Daniel Grolimund, Joachim M Buhmann, Simone Brandt,[...]. Nat Methods 2014
50
Predictive correlates of response to the anti-PD-L1 antibody MPDL3280A in cancer patients.
Roy S Herbst, Jean-Charles Soria, Marcin Kowanetz, Gregg D Fine, Omid Hamid, Michael S Gordon, Jeffery A Sosman, David F McDermott, John D Powderly, Scott N Gettinger,[...]. Nature 2014
Roy S Herbst, Jean-Charles Soria, Marcin Kowanetz, Gregg D Fine, Omid Hamid, Michael S Gordon, Jeffery A Sosman, David F McDermott, John D Powderly, Scott N Gettinger,[...]. Nature 2014
50
Image analysis for accurately counting CD4+ and CD8+ T cells in human tissue.
Kurt Diem, Amalia Magaret, Alexis Klock, Lei Jin, Jia Zhu, Lawrence Corey. J Virol Methods 2015
Kurt Diem, Amalia Magaret, Alexis Klock, Lei Jin, Jia Zhu, Lawrence Corey. J Virol Methods 2015
50
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Walter Bouwmeester, Nicolaas P A Zuithoff, Susan Mallett, Mirjam I Geerlings, Yvonne Vergouwe, Ewout W Steyerberg, Douglas G Altman, Karel G M Moons. PLoS Med 2012
Walter Bouwmeester, Nicolaas P A Zuithoff, Susan Mallett, Mirjam I Geerlings, Yvonne Vergouwe, Ewout W Steyerberg, Douglas G Altman, Karel G M Moons. PLoS Med 2012
50
Zero-inflated Poisson and binomial regression with random effects: a case study.
D B Hall. Biometrics 2000
D B Hall. Biometrics 2000
50
Tumor immune infiltration estimated from gene expression profiles predicts colorectal cancer relapse.
Yasmin Kamal, Dennis Dwan, Hannah J Hoehn, Rebeca Sanz-Pamplona, M Henar Alonso, Victor Moreno, Chao Cheng, Michael J Schell, Youngchul Kim, Seth I Felder,[...]. Oncoimmunology 2021
Yasmin Kamal, Dennis Dwan, Hannah J Hoehn, Rebeca Sanz-Pamplona, M Henar Alonso, Victor Moreno, Chao Cheng, Michael J Schell, Youngchul Kim, Seth I Felder,[...]. Oncoimmunology 2021
50
Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
50
Repeated Measures Designs and Analysis of Longitudinal Data: If at First You Do Not Succeed-Try, Try Again.
Patrick Schober, Thomas R Vetter. Anesth Analg 2018
Patrick Schober, Thomas R Vetter. Anesth Analg 2018
50
Multispectral imaging for quantitative and compartment-specific immune infiltrates reveals distinct immune profiles that classify lung cancer patients.
Artur Mezheyeuski, Christian Holst Bergsland, Max Backman, Dijana Djureinovic, Tobias Sjöblom, Jarle Bruun, Patrick Micke. J Pathol 2018
Artur Mezheyeuski, Christian Holst Bergsland, Max Backman, Dijana Djureinovic, Tobias Sjöblom, Jarle Bruun, Patrick Micke. J Pathol 2018
50
Multiplex immunohistochemistry/immunofluorescence (mIHC/IF) for PD-L1 testing in triple-negative breast cancer: a translational assay compared with conventional IHC.
Joe Yeong, Tira Tan, Zi Long Chow, Qing Cheng, Bernett Lee, Amanda Seet, Johnathan Xiande Lim, Jeffrey Chun Tatt Lim, Clara Chong Hui Ong, Aye Aye Thike,[...]. J Clin Pathol 2020
Joe Yeong, Tira Tan, Zi Long Chow, Qing Cheng, Bernett Lee, Amanda Seet, Johnathan Xiande Lim, Jeffrey Chun Tatt Lim, Clara Chong Hui Ong, Aye Aye Thike,[...]. J Clin Pathol 2020
50
Fast zero-inflated negative binomial mixed modeling approach for analyzing longitudinal metagenomics data.
Xinyan Zhang, Nengjun Yi. Bioinformatics 2020
Xinyan Zhang, Nengjun Yi. Bioinformatics 2020
50
The Validation of a Beta-Binomial Model for Overdispersed Binomial Data.
Jongphil Kim, Ji-Hyun Lee. Commun Stat Simul Comput 2017
Jongphil Kim, Ji-Hyun Lee. Commun Stat Simul Comput 2017
100
50
Advances in Cancer Immunotherapy in Solid Tumors.
Smitha Menon, Sarah Shin, Grace Dy. Cancers (Basel) 2016
Smitha Menon, Sarah Shin, Grace Dy. Cancers (Basel) 2016
50
Beta-binomial modeling of CRISPR pooled screen data identifies target genes with greater sensitivity and fewer false negatives.
Hyun-Hwan Jeong, Seon Young Kim, Maxime W C Rousseaux, Huda Y Zoghbi, Zhandong Liu. Genome Res 2019
Hyun-Hwan Jeong, Seon Young Kim, Maxime W C Rousseaux, Huda Y Zoghbi, Zhandong Liu. Genome Res 2019
50
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Kiya W Govek, Emma C Troisi, Zhen Miao, Rachael G Aubin, Steven Woodhouse, Pablo G Camara. Sci Adv 2021
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50
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Bryan D Martin, Daniela Witten, Amy D Willis. Ann Appl Stat 2020
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50
The Society for Immunotherapy of Cancer statement on best practices for multiplex immunohistochemistry (IHC) and immunofluorescence (IF) staining and validation.
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Janis M Taube, Guray Akturk, Michael Angelo, Elizabeth L Engle, Sacha Gnjatic, Shirley Greenbaum, Noah F Greenwald, Cyrus V Hedvat, Travis J Hollmann, Jonathan Juco,[...]. J Immunother Cancer 2020
50
Cancer immunotherapy: Opportunities and challenges in the rapidly evolving clinical landscape.
Leisha A Emens, Paolo A Ascierto, Phillip K Darcy, Sandra Demaria, Alexander M M Eggermont, William L Redmond, Barbara Seliger, Francesco M Marincola. Eur J Cancer 2017
Leisha A Emens, Paolo A Ascierto, Phillip K Darcy, Sandra Demaria, Alexander M M Eggermont, William L Redmond, Barbara Seliger, Francesco M Marincola. Eur J Cancer 2017
50
Combining multiple spatial statistics enhances the description of immune cell localisation within tumours.
Joshua A Bull, Philip S Macklin, Tom Quaiser, Franziska Braun, Sarah L Waters, Chris W Pugh, Helen M Byrne. Sci Rep 2020
Joshua A Bull, Philip S Macklin, Tom Quaiser, Franziska Braun, Sarah L Waters, Chris W Pugh, Helen M Byrne. Sci Rep 2020
50
Capturing heterogeneity in gene expression studies by surrogate variable analysis.
Jeffrey T Leek, John D Storey. PLoS Genet 2007
Jeffrey T Leek, John D Storey. PLoS Genet 2007
50
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Shuang Jiang, Guanghua Xiao, Andrew Y Koh, Jiwoong Kim, Qiwei Li, Xiaowei Zhan. Biostatistics 2021
Shuang Jiang, Guanghua Xiao, Andrew Y Koh, Jiwoong Kim, Qiwei Li, Xiaowei Zhan. Biostatistics 2021
50
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Emelie Berglund, Jonas Maaskola, Niklas Schultz, Stefanie Friedrich, Maja Marklund, Joseph Bergenstråhle, Firas Tarish, Anna Tanoglidi, Sanja Vickovic, Ludvig Larsson,[...]. Nat Commun 2018
Emelie Berglund, Jonas Maaskola, Niklas Schultz, Stefanie Friedrich, Maja Marklund, Joseph Bergenstråhle, Firas Tarish, Anna Tanoglidi, Sanja Vickovic, Ludvig Larsson,[...]. Nat Commun 2018
50
Digital imaging in pathology: whole-slide imaging and beyond.
Farzad Ghaznavi, Andrew Evans, Anant Madabhushi, Michael Feldman. Annu Rev Pathol 2013
Farzad Ghaznavi, Andrew Evans, Anant Madabhushi, Michael Feldman. Annu Rev Pathol 2013
50
The prognostic influence of tumour-infiltrating lymphocytes in cancer: a systematic review with meta-analysis.
M J M Gooden, G H de Bock, N Leffers, T Daemen, H W Nijman. Br J Cancer 2011
M J M Gooden, G H de Bock, N Leffers, T Daemen, H W Nijman. Br J Cancer 2011
50
Distinguishing between mechanisms of cell aggregation using pair-correlation functions.
D J G Agnew, J E F Green, T M Brown, M J Simpson, B J Binder. J Theor Biol 2014
D J G Agnew, J E F Green, T M Brown, M J Simpson, B J Binder. J Theor Biol 2014
50
Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
50
Ki67 reproducibility using digital image analysis: an inter-platform and inter-operator study.
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Balazs Acs, Vasiliki Pelekanou, Yalai Bai, Sandra Martinez-Morilla, Maria Toki, Samuel C Y Leung, Torsten O Nielsen, David L Rimm. Lab Invest 2019
50
Dietary Protein Intake and Early Menopause in the Nurses' Health Study II.
Maegan E Boutot, Alexandra Purdue-Smithe, Brian W Whitcomb, Kathleen L Szegda, JoAnn E Manson, Susan E Hankinson, Bernard A Rosner, Elizabeth R Bertone-Johnson. Am J Epidemiol 2018
Maegan E Boutot, Alexandra Purdue-Smithe, Brian W Whitcomb, Kathleen L Szegda, JoAnn E Manson, Susan E Hankinson, Bernard A Rosner, Elizabeth R Bertone-Johnson. Am J Epidemiol 2018
50
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Itay Tirosh, Benjamin Izar, Sanjay M Prakadan, Marc H Wadsworth, Daniel Treacy, John J Trombetta, Asaf Rotem, Christopher Rodman, Christine Lian, George Murphy,[...]. Science 2016
Itay Tirosh, Benjamin Izar, Sanjay M Prakadan, Marc H Wadsworth, Daniel Treacy, John J Trombetta, Asaf Rotem, Christopher Rodman, Christine Lian, George Murphy,[...]. Science 2016
50
Patterns of TIGIT Expression in Lymphatic Tissue, Inflammation, and Cancer.
Niclas C Blessin, Ronald Simon, Martina Kluth, Kristine Fischer, Claudia Hube-Magg, Wenchao Li, Georgia Makrypidi-Fraune, Björn Wellge, Tim Mandelkow, Nicolaus F Debatin,[...]. Dis Markers 2019
Niclas C Blessin, Ronald Simon, Martina Kluth, Kristine Fischer, Claudia Hube-Magg, Wenchao Li, Georgia Makrypidi-Fraune, Björn Wellge, Tim Mandelkow, Nicolaus F Debatin,[...]. Dis Markers 2019
50
Multiplexed immunohistochemistry, imaging, and quantitation: a review, with an assessment of Tyramide signal amplification, multispectral imaging and multiplex analysis.
Edward C Stack, Chichung Wang, Kristin A Roman, Clifford C Hoyt. Methods 2014
Edward C Stack, Chichung Wang, Kristin A Roman, Clifford C Hoyt. Methods 2014
50
Validation of multiplex immunofluorescence panels using multispectral microscopy for immune-profiling of formalin-fixed and paraffin-embedded human tumor tissues.
Edwin R Parra, Naohiro Uraoka, Mei Jiang, Pamela Cook, Don Gibbons, Marie-Andrée Forget, Chantale Bernatchez, Cara Haymaker, Ignacio I Wistuba, Jaime Rodriguez-Canales. Sci Rep 2017
Edwin R Parra, Naohiro Uraoka, Mei Jiang, Pamela Cook, Don Gibbons, Marie-Andrée Forget, Chantale Bernatchez, Cara Haymaker, Ignacio I Wistuba, Jaime Rodriguez-Canales. Sci Rep 2017
50
Nurses' Health Study Contributions on the Epidemiology of Less Common Cancers: Endometrial, Ovarian, Pancreatic, and Hematologic.
Brenda M Birmann, Mollie E Barnard, Kimberly A Bertrand, Ying Bao, Marta Crous-Bou, Brian M Wolpin, Immaculata De Vivo, Shelley S Tworoger. Am J Public Health 2016
Brenda M Birmann, Mollie E Barnard, Kimberly A Bertrand, Ying Bao, Marta Crous-Bou, Brian M Wolpin, Immaculata De Vivo, Shelley S Tworoger. Am J Public Health 2016
50
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