A citation-based method for searching scientific literature

Bingbing Xu, Yijun Meng, Yongfeng Jin. Wiley Interdiscip Rev RNA 2021
Times Cited: 14







List of co-cited articles
58 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A regulator of Dscam mutually exclusive splicing fidelity.
Sara Olson, Marco Blanchette, Jung Park, Yiannis Savva, Gene W Yeo, Joanne M Yeakley, Donald C Rio, Brenton R Graveley. Nat Struct Mol Biol 2007
80
21

Dscam diversity is essential for neuronal wiring and self-recognition.
Daisuke Hattori, Ebru Demir, Ho Won Kim, Erika Viragh, S Lawrence Zipursky, Barry J Dickson. Nature 2007
151
21


Dendrite self-avoidance is controlled by Dscam.
Benjamin J Matthews, Michelle E Kim, John J Flanagan, Daisuke Hattori, James C Clemens, S Lawrence Zipursky, Wesley B Grueber. Cell 2007
259
21

Variable window binding for mutually exclusive alternative splicing.
Dimitris Anastassiou, Hairuo Liu, Vinay Varadan. Genome Biol 2006
38
21

Alternative splicing--when two's a crowd.
Christopher W J Smith. Cell 2005
51
21


Roles and mechanisms of alternative splicing in cancer - implications for care.
Sophie C Bonnal, Irene López-Oreja, Juan Valcárcel. Nat Rev Clin Oncol 2020
213
21

Mutually exclusive alternative splicing of pre-mRNAs.
Yongfeng Jin, Haiyang Dong, Yang Shi, Lina Bian. Wiley Interdiscip Rev RNA 2018
31
21


RNA secondary structure in mutually exclusive splicing.
Yun Yang, Leilei Zhan, Wenjing Zhang, Feng Sun, Wenfeng Wang, Nan Tian, Jingpei Bi, Haitao Wang, Dike Shi, Yajian Jiang,[...]. Nat Struct Mol Biol 2011
75
21

Long-range RNA pairings contribute to mutually exclusive splicing.
Yuan Yue, Yun Yang, Lanzhi Dai, Guozheng Cao, Ran Chen, Weiling Hong, Baoping Liu, Yang Shi, Yijun Meng, Feng Shi,[...]. RNA 2016
23
21

Role of RNA secondary structures in regulating Dscam alternative splicing.
Bingbing Xu, Yang Shi, Yandan Wu, Yijun Meng, Yongfeng Jin. Biochim Biophys Acta Gene Regul Mech 2019
12
25

Drosophila Dscam is an axon guidance receptor exhibiting extraordinary molecular diversity.
D Schmucker, J C Clemens, H Shu, C A Worby, J Xiao, M Muda, J E Dixon, S L Zipursky. Cell 2000
744
21

An RNA architectural locus control region involved in Dscam mutually exclusive splicing.
Xuebin Wang, Guoli Li, Yun Yang, Wenfeng Wang, Wenjing Zhang, Huawei Pan, Peng Zhang, Yuan Yue, Hao Lin, Baoping Liu,[...]. Nat Commun 2012
31
21


Drosophila sensory neurons require Dscam for dendritic self-avoidance and proper dendritic field organization.
Peter Soba, Sijun Zhu, Kazuo Emoto, Susan Younger, Shun-Jen Yang, Hung-Hsiang Yu, Tzumin Lee, Lily Yeh Jan, Yuh-Nung Jan. Neuron 2007
196
21

Homophilic Dscam interactions control complex dendrite morphogenesis.
Michael E Hughes, Rachel Bortnick, Asako Tsubouchi, Philipp Bäumer, Masahiro Kondo, Tadashi Uemura, Dietmar Schmucker. Neuron 2007
196
21


Evidence for widespread association of mammalian splicing and conserved long-range RNA structures.
Dmitri D Pervouchine, Ekaterina E Khrameeva, Marina Yu Pichugina, Oleksii V Nikolaienko, Mikhail S Gelfand, Petr M Rubtsov, Andrei A Mironov. RNA 2012
44
14

Role and convergent evolution of competing RNA secondary structures in mutually exclusive splicing.
Yuan Yue, Shouqing Hou, Xiu Wang, Leilei Zhan, Guozheng Cao, Guoli Li, Yang Shi, Peng Zhang, Weiling Hong, Hao Lin,[...]. RNA Biol 2017
16
14

Diverse alternative back-splicing and alternative splicing landscape of circular RNAs.
Xiao-Ou Zhang, Rui Dong, Yang Zhang, Jia-Lin Zhang, Zheng Luo, Jun Zhang, Ling-Ling Chen, Li Yang. Genome Res 2016
512
14

Overexpression of Down syndrome cell adhesion molecule impairs precise synaptic targeting.
Vedrana Cvetkovska, Alexa D Hibbert, Farida Emran, Brian E Chen. Nat Neurosci 2013
50
14

Expansion of the eukaryotic proteome by alternative splicing.
Timothy W Nilsen, Brenton R Graveley. Nature 2010
14

Alternative splicing of Drosophila Dscam generates axon guidance receptors that exhibit isoform-specific homophilic binding.
Woj M Wojtowicz, John J Flanagan, S Sean Millard, S Lawrence Zipursky, James C Clemens. Cell 2004
229
14

Splicing dysregulation in cancer: from mechanistic understanding to a new class of therapeutic targets.
Yongbo Wang, Yufang Bao, Sirui Zhang, Zefeng Wang. Sci China Life Sci 2020
18
14

RNA Splicing and Disease: Animal Models to Therapies.
Matías Montes, Brianne L Sanford, Daniel F Comiskey, Dawn S Chandler. Trends Genet 2019
88
14

Plasmid-based gap-repair recombineered transgenes reveal a central role for introns in mutually exclusive alternative splicing in Down Syndrome Cell Adhesion Molecule exon 4.
Irmgard U Haussmann, Pinar Ustaoglu, Ulrike Brauer, Yash Hemani, Thomas C Dix, Matthias Soller. Nucleic Acids Res 2019
10
20


WebLogo: a sequence logo generator.
Gavin E Crooks, Gary Hon, John-Marc Chandonia, Steven E Brenner. Genome Res 2004
14

Srrm234, but not canonical SR and hnRNP proteins, drive inclusion of Dscam exon 9 variable exons.
Pinar Ustaoglu, Irmgard U Haussmann, Hongzhi Liao, Antonio Torres-Mendez, Roland Arnold, Manuel Irimia, Matthias Soller. RNA 2019
9
22

The landscape of human mutually exclusive splicing.
Klas Hatje, Raza-Ur Rahman, Ramon O Vidal, Dominic Simm, Björn Hammesfahr, Vikas Bansal, Ashish Rajput, Michel Edwar Mickael, Ting Sun, Stefan Bonn,[...]. Mol Syst Biol 2017
39
14

The molecular basis of self-avoidance.
S Lawrence Zipursky, Wesley B Grueber. Annu Rev Neurosci 2013
121
14


Optimized gene editing technology for Drosophila melanogaster using germ line-specific Cas9.
Xingjie Ren, Jin Sun, Benjamin E Housden, Yanhui Hu, Charles Roesel, Shuailiang Lin, Lu-Ping Liu, Zhihao Yang, Decai Mao, Lingzhu Sun,[...]. Proc Natl Acad Sci U S A 2013
249
14


Drosophila Dscam is required for divergent segregation of sister branches and suppresses ectopic bifurcation of axons.
Jian Wang, Christopher T Zugates, Inray H Liang, Ching-Hsien J Lee, Tzumin Lee. Neuron 2002
158
14

Extensive diversity of Ig-superfamily proteins in the immune system of insects.
Fiona L Watson, Roland Püttmann-Holgado, Franziska Thomas, David L Lamar, Michael Hughes, Masahiro Kondo, Vivienne I Rebel, Dietmar Schmucker. Science 2005
455
14

Ultra-deep profiling of alternatively spliced Drosophila Dscam isoforms by circularization-assisted multi-segment sequencing.
Wei Sun, Xintian You, Andreas Gogol-Döring, Haihuai He, Yoshiaki Kise, Madlen Sohn, Tao Chen, Ansgar Klebes, Dietmar Schmucker, Wei Chen. EMBO J 2013
47
14

Enhanced specificity and efficiency of the CRISPR/Cas9 system with optimized sgRNA parameters in Drosophila.
Xingjie Ren, Zhihao Yang, Jiang Xu, Jin Sun, Decai Mao, Yanhui Hu, Su-Juan Yang, Huan-Huan Qiao, Xia Wang, Qun Hu,[...]. Cell Rep 2014
175
14

The molecular diversity of Dscam is functionally required for neuronal wiring specificity in Drosophila.
Brian E Chen, Masahiro Kondo, Amélie Garnier, Fiona L Watson, Roland Püettmann-Holgado, David R Lamar, Dietmar Schmucker. Cell 2006
136
14

Cell-intrinsic requirement of Dscam1 isoform diversity for axon collateral formation.
Haihuai He, Yoshiaki Kise, Azadeh Izadifar, Olivier Urwyler, Derya Ayaz, Akhila Parthasarthy, Bing Yan, Maria-Luise Erfurth, Dan Dascenco, Dietmar Schmucker. Science 2014
48
14

Stochastic yet biased expression of multiple Dscam splice variants by individual cells.
Guilherme Neves, Jacob Zucker, Mark Daly, Andrew Chess. Nat Genet 2004
186
14

Robust discrimination between self and non-self neurites requires thousands of Dscam1 isoforms.
Daisuke Hattori, Yi Chen, Benjamin J Matthews, Lukasz Salwinski, Chiara Sabatti, Wesley B Grueber, S Lawrence Zipursky. Nature 2009
110
14


Analysis of Dscam diversity in regulating axon guidance in Drosophila mushroom bodies.
Xiao-Li Zhan, James C Clemens, Guilherme Neves, Daisuke Hattori, John J Flanagan, Thomas Hummel, M Luisa Vasconcelos, Andrew Chess, S Lawrence Zipursky. Neuron 2004
164
14

Clustal W and Clustal X version 2.0.
M A Larkin, G Blackshields, N P Brown, R Chenna, P A McGettigan, H McWilliam, F Valentin, I M Wallace, A Wilm, R Lopez,[...]. Bioinformatics 2007
14

rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data.
Shihao Shen, Juw Won Park, Zhi-xiang Lu, Lan Lin, Michael D Henry, Ying Nian Wu, Qing Zhou, Yi Xing. Proc Natl Acad Sci U S A 2014
942
14

The regulation properties of RNA secondary structure in alternative splicing.
Natalia Bartys, Ryszard Kierzek, Jolanta Lisowiec-Wachnicka. Biochim Biophys Acta Gene Regul Mech 2019
16
14

A census of human RNA-binding proteins.
Stefanie Gerstberger, Markus Hafner, Thomas Tuschl. Nat Rev Genet 2014
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.