A citation-based method for searching scientific literature

Yutaro Tsubono, Yusuke Kawamoto, Takuya Hidaka, Ganesh N Pandian, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama. J Am Chem Soc 2020
Times Cited: 4







List of co-cited articles
2 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Heat Stroke in Cell Tissues Related to Sulfur Dioxide Level Is Precisely Monitored by Light-Controlled Fluorescent Probes.
Weijie Zhang, Fangjun Huo, Yongkang Yue, Yongbin Zhang, Jianbin Chao, Fangqin Cheng, Caixia Yin. J Am Chem Soc 2020
25
50

Enzymatic Cleavage of Branched Peptides for Targeting Mitochondria.
Hongjian He, Jiaqing Wang, Huaimin Wang, Ning Zhou, Dongsik Yang, Douglas R Green, Bing Xu. J Am Chem Soc 2018
56
50

Sequence specific and high affinity recognition of 5'-ACGCGT-3' by rationally designed pyrrole-imidazole H-pin polyamides: thermodynamic and structural studies.
Hilary Mackay, Toni Brown, Peter B Uthe, Laura Westrate, Alan Sielaff, Justin Jones, James P Lajiness, Jerome Kluza, Caroline O'Hare, Binh Nguyen,[...]. Bioorg Med Chem 2008
10
25

G-Quadruplex Induction by the Hairpin Pyrrole-Imidazole Polyamide Dimer.
Shunsuke Obata, Sefan Asamitsu, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama. Biochemistry 2018
5
25

Mitochondria-penetrating peptides.
Kristin L Horton, Kelly M Stewart, Sonali B Fonseca, Qian Guo, Shana O Kelley. Chem Biol 2008
238
25

Synthesis of cyclic Py-Im polyamide libraries.
Benjamin C Li, David C Montgomery, James W Puckett, Peter B Dervan. J Org Chem 2013
25
25

A synthetic DNA-binding inhibitor of SOX2 guides human induced pluripotent stem cells to differentiate into mesoderm.
Junichi Taniguchi, Ganesh N Pandian, Takuya Hidaka, Kaori Hashiya, Toshikazu Bando, Kyeong Kyu Kim, Hiroshi Sugiyama. Nucleic Acids Res 2017
19
25

Ligand-Mediated G-Quadruplex Induction in a Double-Stranded DNA Context by Cyclic Imidazole/Lysine Polyamide.
Sefan Asamitsu, Yue Li, Toshikazu Bando, Hiroshi Sugiyama. Chembiochem 2016
9
25

Enhancing the cellular uptake of Py-Im polyamides through next-generation aryl turns.
Jordan L Meier, David C Montgomery, Peter B Dervan. Nucleic Acids Res 2012
30
25


Evaluation of the DNA Alkylation Properties of a Chlorambucil-Conjugated Cyclic Pyrrole-Imidazole Polyamide.
Yuki Hirose, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama. Chemistry 2021
1
100

Interaction of arginine-rich peptides with membrane-associated proteoglycans is crucial for induction of actin organization and macropinocytosis.
Ikuhiko Nakase, Akiko Tadokoro, Noriko Kawabata, Toshihide Takeuchi, Hironori Katoh, Kiyo Hiramoto, Manabu Negishi, Motoyoshi Nomizu, Yukio Sugiura, Shiroh Futaki. Biochemistry 2007
281
25

Structural evaluation of tandem hairpin pyrrole-imidazole polyamides recognizing human telomeres.
Akiyoshi Hirata, Kiyoshi Nokihara, Yusuke Kawamoto, Toshikazu Bando, Asuka Sasaki, Satoru Ide, Kazuhiro Maeshima, Takeshi Kasama, Hiroshi Sugiyama. J Am Chem Soc 2014
17
25

Cellular uptake of N-methylpyrrole/N-methylimidazole polyamide-dye conjugates.
Jason M Belitsky, Stephanie J Leslie, Paramjit S Arora, Terry A Beerman, Peter B Dervan. Bioorg Med Chem 2002
107
25

Characterization and solubilization of pyrrole-imidazole polyamide aggregates.
Amanda E Hargrove, Jevgenij A Raskatov, Jordan L Meier, David C Montgomery, Peter B Dervan. J Med Chem 2012
28
25

A structural basis for recognition of A.T and T.A base pairs in the minor groove of B-DNA.
C L Kielkopf, S White, J W Szewczyk, J M Turner, E E Baird, P B Dervan, D C Rees. Science 1998
202
25


Simultaneous Binding of Hybrid Molecules Constructed with Dual DNA-Binding Components to a G-Quadruplex and Its Proximal Duplex.
Sefan Asamitsu, Shunsuke Obata, Anh Tuân Phan, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama. Chemistry 2018
20
25

Development of a new method for synthesis of tandem hairpin pyrrole-imidazole polyamide probes targeting human telomeres.
Yusuke Kawamoto, Toshikazu Bando, Fukumi Kamada, Yue Li, Kaori Hashiya, Kazuhiro Maeshima, Hiroshi Sugiyama. J Am Chem Soc 2013
31
25

Orthogonal γPNA Dimerization Domains Empower DNA Binders with Cooperativity and Versatility Mimicking that of Transcription Factor Pairs.
Zutao Yu, Wei-Che Hsieh, Sefan Asamitsu, Kaori Hashiya, Toshikazu Bando, Danith H Ly, Hiroshi Sugiyama. Chemistry 2018
3
33

Cell permeability of Py-Im-polyamide-fluorescein conjugates: Influence of molecular size and Py/Im content.
Shigeki Nishijima, Ken-Ichi Shinohara, Toshikazu Bando, Masafumi Minoshima, Gengo Kashiwazaki, Hiroshi Sugiyama. Bioorg Med Chem 2010
43
25

A synthetic transcription factor pair mimic for precise recruitment of an epigenetic modifier to the targeted DNA locus.
Zutao Yu, Mengting Ai, Soumen K Samanta, Fumitaka Hashiya, Junichi Taniguchi, Sefan Asamitsu, Shuji Ikeda, Kaori Hashiya, Toshikazu Bando, Ganesh N Pandian,[...]. Chem Commun (Camb) 2020
4
25

Cyclic polyamides for recognition in the minor groove of DNA.
J Cho, M E Parks, P B Dervan. Proc Natl Acad Sci U S A 1995
36
25

Tandem trimer pyrrole-imidazole polyamide probes targeting 18 base pairs in human telomere sequences.
Yusuke Kawamoto, Asuka Sasaki, Kaori Hashiya, Satoru Ide, Toshikazu Bando, Kazuhiro Maeshima, Hiroshi Sugiyama. Chem Sci 2015
23
25

DNA minor groove binders as potential antitumor and antimicrobial agents.
Pier Giovanni Baraldi, Andrea Bovero, Francesca Fruttarolo, Delia Preti, Mojgan Aghazadeh Tabrizi, Maria Giovanna Pavani, Romeo Romagnoli. Med Res Rev 2004
227
25

Fmoc solid phase synthesis of polyamides containing pyrrole and imidazole amino acids.
N R Wurtz, J M Turner, E E Baird, P B Dervan. Org Lett 2001
100
25

Genome-Wide Assessment of the Binding Effects of Artificial Transcriptional Activators by High-Throughput Sequencing.
Anandhakumar Chandran, Junetha Syed, Yue Li, Shinsuke Sato, Toshikazu Bando, Hiroshi Sugiyama. Chembiochem 2016
5
25

Structural basis for G.C recognition in the DNA minor groove.
C L Kielkopf, E E Baird, P B Dervan, D C Rees. Nat Struct Biol 1998
188
25

Mapping polyamide-DNA interactions in human cells reveals a new design strategy for effective targeting of genomic sites.
Graham S Erwin, Devesh Bhimsaria, Asuka Eguchi, Aseem Z Ansari. Angew Chem Int Ed Engl 2014
22
25

Regulation of gene expression by small molecules.
J M Gottesfeld, L Neely, J W Trauger, E E Baird, P B Dervan. Nature 1997
349
25

Pip-HoGu: An Artificial Assembly with Cooperative DNA Recognition Capable of Mimicking Transcription Factor Pairs.
Zutao Yu, Chuanxin Guo, Yulei Wei, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama. J Am Chem Soc 2018
12
25

Guiding the design of synthetic DNA-binding molecules with massively parallel sequencing.
Jordan L Meier, Abigail S Yu, Ian Korf, David J Segal, Peter B Dervan. J Am Chem Soc 2012
46
25

Design of a G.C-specific DNA minor groove-binding peptide.
B H Geierstanger, M Mrksich, P B Dervan, D E Wemmer. Science 1994
139
25

Biomimetic Artificial Epigenetic Code for Targeted Acetylation of Histones.
Junichi Taniguchi, Yihong Feng, Ganesh N Pandian, Fumitaka Hashiya, Takuya Hidaka, Kaori Hashiya, Soyoung Park, Toshikazu Bando, Shinji Ito, Hiroshi Sugiyama. J Am Chem Soc 2018
11
25

Synthetic genome readers target clustered binding sites across diverse chromatin states.
Graham S Erwin, Matthew P Grieshop, Devesh Bhimsaria, Truman J Do, José A Rodríguez-Martínez, Charu Mehta, Kanika Khanna, Scott A Swanson, Ron Stewart, James A Thomson,[...]. Proc Natl Acad Sci U S A 2016
10
25

Targeted suppression of EVI1 oncogene expression by sequence-specific pyrrole-imidazole polyamide.
Junetha Syed, Ganesh N Pandian, Shinsuke Sato, Junichi Taniguchi, Anandhakumar Chandran, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama. Chem Biol 2014
22
25

Recognition of DNA by designed ligands at subnanomolar concentrations.
J W Trauger, E E Baird, P B Dervan. Nature 1996
293
25

Creation of a Synthetic Ligand for Mitochondrial DNA Sequence Recognition and Promoter-Specific Transcription Suppression.
Takuya Hidaka, Ganesh N Pandian, Junichi Taniguchi, Tomohiro Nobeyama, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama. J Am Chem Soc 2017
16
25

Binding of an antitumor drug to DNA, Netropsin and C-G-C-G-A-A-T-T-BrC-G-C-G.
M L Kopka, C Yoon, D Goodsell, P Pjura, R E Dickerson. J Mol Biol 1985
338
25

Transcriptional regulators form diverse groups with context-dependent regulatory functions.
Gerald Stampfel, Tomáš Kazmar, Olga Frank, Sebastian Wienerroither, Franziska Reiter, Alexander Stark. Nature 2015
85
25

Targeted suppression of metastasis regulatory transcription factor SOX2 in various cancer cell lines using a sequence-specific designer pyrrole-imidazole polyamide.
Madhu Malinee, Alok Kumar, Takuya Hidaka, Masanobu Horie, Kouichi Hasegawa, Ganesh N Pandian, Hiroshi Sugiyama. Bioorg Med Chem 2020
5
25

Cyclic pyrrole-imidazole polyamides targeted to the androgen response element.
David M Chenoweth, Daniel A Harki, John W Phillips, Christian Dose, Peter B Dervan. J Am Chem Soc 2009
59
25

Telomere Visualization in Tissue Sections using Pyrrole-Imidazole Polyamide Probes.
Asuka Sasaki, Satoru Ide, Yusuke Kawamoto, Toshikazu Bando, Yukinori Murata, Mari Shimura, Kazuhiko Yamada, Akiyoshi Hirata, Kiyoshi Nokihara, Tatsumi Hirata,[...]. Sci Rep 2016
10
25

Defining the sequence-recognition profile of DNA-binding molecules.
Christopher L Warren, Natasha C S Kratochvil, Karl E Hauschild, Shane Foister, Mary L Brezinski, Peter B Dervan, George N Phillips, Aseem Z Ansari. Proc Natl Acad Sci U S A 2006
165
25

Enhanced nuclear accumulation of pyrrole-imidazole polyamides by incorporation of the tri-arginine vector.
Takuya Hidaka, Yutaro Tsubono, Kaori Hashiya, Toshikazu Bando, Ganesh N Pandian, Hiroshi Sugiyama. Chem Commun (Camb) 2020
1
100

Single-dose pharmacokinetic and toxicity analysis of pyrrole-imidazole polyamides in mice.
Timothy W Synold, Bixin Xi, Jun Wu, Yun Yen, Benjamin C Li, Fei Yang, John W Phillips, Nicholas G Nickols, Peter B Dervan. Cancer Chemother Pharmacol 2012
23
25

Mitochondrial diseases.
Gráinne S Gorman, Patrick F Chinnery, Salvatore DiMauro, Michio Hirano, Yasutoshi Koga, Robert McFarland, Anu Suomalainen, David R Thorburn, Massimo Zeviani, Douglass M Turnbull. Nat Rev Dis Primers 2016
403
25

Improved nuclear localization of DNA-binding polyamides.
Nicholas G Nickols, Claire S Jacobs, Michelle E Farkas, Peter B Dervan. Nucleic Acids Res 2007
77
25

Animal toxicity of hairpin pyrrole-imidazole polyamides varies with the turn unit.
Fei Yang, Nicholas G Nickols, Benjamin C Li, Jerzy O Szablowski, Shari R Hamilton, Jordan L Meier, Chieh-Mei Wang, Peter B Dervan. J Med Chem 2013
23
25

Targeting 24 bp within Telomere Repeat Sequences with Tandem Tetramer Pyrrole-Imidazole Polyamide Probes.
Yusuke Kawamoto, Asuka Sasaki, Anandhakumar Chandran, Kaori Hashiya, Satoru Ide, Toshikazu Bando, Kazuhiro Maeshima, Hiroshi Sugiyama. J Am Chem Soc 2016
23
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.