A citation-based method for searching scientific literature

Miaomiao Li, Arne Klungland. DNA Repair (Amst) 2020
Times Cited: 2







List of co-cited articles
14 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Regulatory R-loops as facilitators of gene expression and genome stability.
Christof Niehrs, Brian Luke. Nat Rev Mol Cell Biol 2020
71
100

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
432
100

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
194
100

The SUMOylated METTL8 Induces R-loop and Tumorigenesis via m3C.
Li-Hong Zhang, Xue-Yun Zhang, Tao Hu, Xin-Yun Chen, Jing-Jia Li, Manfred Raida, Ning Sun, Yan Luo, Xiang Gao. iScience 2020
17
100

m6A promotes R-loop formation to facilitate transcription termination.
Xin Yang, Qian-Lan Liu, Wei Xu, Yi-Chang Zhang, Ying Yang, Lin-Fang Ju, Jing Chen, Yu-Sheng Chen, Kuan Li, Jie Ren,[...]. Cell Res 2019
43
100

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
230
100

N6-methyladenosine regulates the stability of RNA:DNA hybrids in human cells.
Abdulkadir Abakir, Tom C Giles, Agnese Cristini, Jeremy M Foster, Nan Dai, Marta Starczak, Alejandro Rubio-Roldan, Miaomiao Li, Maria Eleftheriou, James Crutchley,[...]. Nat Genet 2020
61
100

ROS-induced R loops trigger a transcription-coupled but BRCA1/2-independent homologous recombination pathway through CSB.
Yaqun Teng, Tribhuwan Yadav, Meihan Duan, Jun Tan, Yufei Xiang, Boya Gao, Jianquan Xu, Zhuobin Liang, Yang Liu, Satoshi Nakajima,[...]. Nat Commun 2018
54
100

R-Loops Enhance Polycomb Repression at a Subset of Developmental Regulator Genes.
Konstantina Skourti-Stathaki, Elena Torlai Triglia, Marie Warburton, Philipp Voigt, Adrian Bird, Ana Pombo. Mol Cell 2019
33
100

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
130
100

Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair.
Wei-Ting Lu, Ben R Hawley, George L Skalka, Robert A Baldock, Ewan M Smith, Aldo S Bader, Michal Malewicz, Felicity Z Watts, Ania Wilczynska, Martin Bushell. Nat Commun 2018
96
100

m5C modification of mRNA serves a DNA damage code to promote homologous recombination.
Hao Chen, Haibo Yang, Xiaolan Zhu, Tribhuwan Yadav, Jian Ouyang, Samuel S Truesdell, Jun Tan, Yumin Wang, Meihan Duan, Leizhen Wei,[...]. Nat Commun 2020
24
100

METTL3 and N6-Methyladenosine Promote Homologous Recombination-Mediated Repair of DSBs by Modulating DNA-RNA Hybrid Accumulation.
Canfeng Zhang, Liping Chen, Di Peng, Ao Jiang, Yunru He, Yanru Zeng, Chen Xie, Haoxian Zhou, Xiaotong Luo, Haiying Liu,[...]. Mol Cell 2020
47
100

m6A RNA modification as a new player in R-loop regulation.
Aline Marnef, Gaëlle Legube. Nat Genet 2020
7
100

Phase separation of 53BP1 determines liquid-like behavior of DNA repair compartments.
Sinan Kilic, Aleksandra Lezaja, Marco Gatti, Eliana Bianco, Jone Michelena, Ralph Imhof, Matthias Altmeyer. EMBO J 2019
114
50

BMI1-UBR5 axis regulates transcriptional repression at damaged chromatin.
Anthony Sanchez, Angelo De Vivo, Nadima Uprety, Jonghwan Kim, Stanley M Stevens, Younghoon Kee. Proc Natl Acad Sci U S A 2016
33
50

And yet, it moves: nuclear and chromatin dynamics of a heterochromatic double-strand break.
P Christopher Caridi, Laetitia Delabaere, Grzegorz Zapotoczny, Irene Chiolo. Philos Trans R Soc Lond B Biol Sci 2017
28
50


RNA Helicase DDX1 Converts RNA G-Quadruplex Structures into R-Loops to Promote IgH Class Switch Recombination.
Claudia Ribeiro de Almeida, Somdutta Dhir, Ashish Dhir, Amin E Moghaddam, Quentin Sattentau, Anton Meinhart, Nicholas J Proudfoot. Mol Cell 2018
73
50

Role for RNA:DNA hybrids in origin-independent replication priming in a eukaryotic system.
Ruth Stuckey, Néstor García-Rodríguez, Andrés Aguilera, Ralf Erik Wellinger. Proc Natl Acad Sci U S A 2015
63
50

FANCM, BRCA1, and BLM cooperatively resolve the replication stress at the ALT telomeres.
Xiaolei Pan, William C Drosopoulos, Louisa Sethi, Advaitha Madireddy, Carl L Schildkraut, Dong Zhang. Proc Natl Acad Sci U S A 2017
53
50


RNase H1 directs origin-specific initiation of DNA replication in human mitochondria.
Viktor Posse, Ali Al-Behadili, Jay P Uhler, Anders R Clausen, Aurelio Reyes, Massimo Zeviani, Maria Falkenberg, Claes M Gustafsson. PLoS Genet 2019
28
50

Interplay between DNA sequence and negative superhelicity drives R-loop structures.
Robert Stolz, Shaheen Sulthana, Stella R Hartono, Maika Malig, Craig J Benham, Frederic Chedin. Proc Natl Acad Sci U S A 2019
38
50

m6A enhances the phase separation potential of mRNA.
Ryan J Ries, Sara Zaccara, Pierre Klein, Anthony Olarerin-George, Sim Namkoong, Brian F Pickering, Deepak P Patil, Hojoong Kwak, Jun Hee Lee, Samie R Jaffrey. Nature 2019
188
50

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
122
50

Gene gating at nuclear pores prevents the formation of R loops.
Hélène Gaillard, Francisco García-Benítez, Andrés Aguilera. Mol Cell Oncol 2017
1
100

RAD51-dependent recruitment of TERRA lncRNA to telomeres through R-loops.
Marianna Feretzaki, Michaela Pospisilova, Rita Valador Fernandes, Thomas Lunardi, Lumir Krejci, Joachim Lingner. Nature 2020
36
50

Functions of Replication Protein A as a Sensor of R Loops and a Regulator of RNaseH1.
Hai Dang Nguyen, Tribhuwan Yadav, Sumanprava Giri, Borja Saez, Timothy A Graubert, Lee Zou. Mol Cell 2017
113
50

Genetic Characterization of Three Distinct Mechanisms Supporting RNA-Driven DNA Repair and Modification Reveals Major Role of DNA Polymerase ζ.
Chance Meers, Havva Keskin, Gabor Banyai, Olga Mazina, Taehwan Yang, Alli L Gombolay, Kuntal Mukherjee, Efiyenia I Kaparos, Gary Newnam, Alexander Mazin,[...]. Mol Cell 2020
13
50

Organizing DNA repair in the nucleus: DSBs hit the road.
Aline Marnef, Gaëlle Legube. Curr Opin Cell Biol 2017
40
50

R-loops induce repressive chromatin marks over mammalian gene terminators.
Konstantina Skourti-Stathaki, Kinga Kamieniarz-Gdula, Nicholas J Proudfoot. Nature 2014
209
50

Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair.
Olga M Mazina, Havva Keskin, Kritika Hanamshet, Francesca Storici, Alexander V Mazin. Mol Cell 2017
67
50


RNase H enables efficient repair of R-loop induced DNA damage.
Jeremy D Amon, Douglas Koshland. Elife 2016
69
50

BRCA2 controls DNA:RNA hybrid level at DSBs by mediating RNase H2 recruitment.
Giuseppina D'Alessandro, Donna Rose Whelan, Sean Michael Howard, Valerio Vitelli, Xavier Renaudin, Marek Adamowicz, Fabio Iannelli, Corey Winston Jones-Weinert, MiYoung Lee, Valentina Matti,[...]. Nat Commun 2018
92
50

Studying DNA Double-Strand Break Repair: An Ever-Growing Toolbox.
Alexandra C Vítor, Pablo Huertas, Gaëlle Legube, Sérgio F de Almeida. Front Mol Biosci 2020
27
50

Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
332
50

Looping the (R) Loop in DSB Repair via RNA Methylation.
Belén Gómez-González, Andrés Aguilera. Mol Cell 2020
2
50

Liquid demixing of intrinsically disordered proteins is seeded by poly(ADP-ribose).
Matthias Altmeyer, Kai J Neelsen, Federico Teloni, Irina Pozdnyakova, Stefania Pellegrino, Merete Grøfte, Maj-Britt Druedahl Rask, Werner Streicher, Stephanie Jungmichel, Michael Lund Nielsen,[...]. Nat Commun 2015
278
50

RNA m6A methylation regulates the ultraviolet-induced DNA damage response.
Yang Xiang, Benoit Laurent, Chih-Hung Hsu, Sigrid Nachtergaele, Zhike Lu, Wanqiang Sheng, Chuanyun Xu, Hao Chen, Jian Ouyang, Siqing Wang,[...]. Nature 2017
376
50

FANCM suppresses DNA replication stress at ALT telomeres by disrupting TERRA R-loops.
Xiaolei Pan, Yun Chen, Beena Biju, Naveed Ahmed, Joyce Kong, Marti Goldenberg, Judy Huang, Nandakumar Mohan, Stephanie Klosek, Kian Parsa,[...]. Sci Rep 2019
18
50

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
471
50



RRP6/EXOSC10 is required for the repair of DNA double-strand breaks by homologous recombination.
Consuelo Marin-Vicente, Judit Domingo-Prim, Andrea B Eberle, Neus Visa. J Cell Sci 2015
28
50

RNA Polymerase II CTD Tyrosine 1 Is Required for Efficient Termination by the Nrd1-Nab3-Sen1 Pathway.
Pierre Collin, Célia Jeronimo, Christian Poitras, François Robert. Mol Cell 2019
14
50

DNA repair by RNA: Templated, or not templated, that is the question.
Chance Meers, Havva Keskin, Francesca Storici. DNA Repair (Amst) 2016
38
50

Senataxin Ortholog Sen1 Limits DNA:RNA Hybrid Accumulation at DNA Double-Strand Breaks to Control End Resection and Repair Fidelity.
Chetan C Rawal, Luca Zardoni, Matteo Di Terlizzi, Elena Galati, Alessandra Brambati, Federico Lazzaro, Giordano Liberi, Achille Pellicioli. Cell Rep 2020
13
50

Specificity of end resection pathways for double-strand break regions containing ribonucleotides and base lesions.
James M Daley, Nozomi Tomimatsu, Grace Hooks, Weibin Wang, Adam S Miller, Xiaoyu Xue, Kevin A Nguyen, Hardeep Kaur, Elizabeth Williamson, Bipasha Mukherjee,[...]. Nat Commun 2020
10
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.