A citation-based method for searching scientific literature

Daniel J Sanderson, Michael S Cohen. Crit Rev Biochem Mol Biol 2020
Times Cited: 9







List of co-cited articles
106 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Engineering the substrate specificity of ADP-ribosyltransferases for identifying direct protein targets.
Ian Carter-O'Connell, Haihong Jin, Rory K Morgan, Larry L David, Michael S Cohen. J Am Chem Soc 2014
80
55

Identifying Family-Member-Specific Targets of Mono-ARTDs by Using a Chemical Genetics Approach.
Ian Carter-O'Connell, Haihong Jin, Rory K Morgan, Roko Zaja, Larry L David, Ivan Ahel, Michael S Cohen. Cell Rep 2016
59
55

Engineering Af1521 improves ADP-ribose binding and identification of ADP-ribosylated proteins.
Kathrin Nowak, Florian Rosenthal, Tobias Karlberg, Mareike Bütepage, Ann-Gerd Thorsell, Birgit Dreier, Jonas Grossmann, Jens Sobek, Ralph Imhof, Bernhard Lüscher,[...]. Nat Commun 2020
25
44

Chemical genetics and proteome-wide site mapping reveal cysteine MARylation by PARP-7 on immune-relevant protein targets.
Kelsie M Rodriguez, Sara C Buch-Larsen, Ilsa T Kirby, Ivan Rodriguez Siordia, David Hutin, Marit Rasmussen, Denis M Grant, Larry L David, Jason Matthews, Michael L Nielsen,[...]. Elife 2021
19
44

Proteome-wide identification of the endogenous ADP-ribosylome of mammalian cells and tissue.
Rita Martello, Mario Leutert, Stephanie Jungmichel, Vera Bilan, Sara C Larsen, Clifford Young, Michael O Hottiger, Michael L Nielsen. Nat Commun 2016
117
44

(ADP-ribosyl)hydrolases: structure, function, and biology.
Johannes Gregor Matthias Rack, Luca Palazzo, Ivan Ahel. Genes Dev 2020
67
44


Readers of poly(ADP-ribose): designed to be fit for purpose.
Federico Teloni, Matthias Altmeyer. Nucleic Acids Res 2016
143
33

ELTA: Enzymatic Labeling of Terminal ADP-Ribose.
Yoshinari Ando, Elad Elkayam, Robert Lyle McPherson, Morgan Dasovich, Shang-Jung Cheng, Jim Voorneveld, Dmitri V Filippov, Shao-En Ong, Leemor Joshua-Tor, Anthony K L Leung. Mol Cell 2019
30
33

Quantitative proteomics profiling of the poly(ADP-ribose)-related response to genotoxic stress.
Jean-Philippe Gagné, Emilie Pic, Maxim Isabelle, Jana Krietsch, Chantal Ethier, Eric Paquet, Isabelle Kelly, Michel Boutin, Kyung-Mee Moon, Leonard J Foster,[...]. Nucleic Acids Res 2012
111
33

Chemical genetic discovery of PARP targets reveals a role for PARP-1 in transcription elongation.
Bryan A Gibson, Yajie Zhang, Hong Jiang, Kristine M Hussey, Jonathan H Shrimp, Hening Lin, Frank Schwede, Yonghao Yu, W Lee Kraus. Science 2016
216
33

Proteome-Wide Identification of In Vivo ADP-Ribose Acceptor Sites by Liquid Chromatography-Tandem Mass Spectrometry.
Sara C Larsen, Mario Leutert, Vera Bilan, Rita Martello, Stephanie Jungmichel, Clifford Young, Michael O Hottiger, Michael L Nielsen. Methods Mol Biol 2017
19
33

Translation inhibition and stress granules in the antiviral immune response.
Craig McCormick, Denys A Khaperskyy. Nat Rev Immunol 2017
173
33

Quantitative Analysis of NAD Synthesis-Breakdown Fluxes.
Ling Liu, Xiaoyang Su, William J Quinn, Sheng Hui, Kristin Krukenberg, David W Frederick, Philip Redpath, Le Zhan, Karthikeyani Chellappa, Eileen White,[...]. Cell Metab 2018
206
33

Generation and Characterization of Recombinant Antibody-like ADP-Ribose Binding Proteins.
Bryan A Gibson, Lesley B Conrad, Dan Huang, W Lee Kraus. Biochemistry 2017
50
33

In vivo vizualisation of mono-ADP-ribosylation by dPARP16 upon amino-acid starvation.
Angelica Aguilera-Gomez, Marinke M van Oorschot, Tineke Veenendaal, Catherine Rabouille. Elife 2016
31
33

Regulation of NF-κB signalling by the mono-ADP-ribosyltransferase ARTD10.
Patricia Verheugd, Alexandra H Forst, Larissa Milke, Nicolas Herzog, Karla L H Feijs, Elisabeth Kremmer, Henning Kleine, Bernhard Lüscher. Nat Commun 2013
104
33

PARP16/ARTD15 is a novel endoplasmic-reticulum-associated mono-ADP-ribosyltransferase that interacts with, and modifies karyopherin-ß1.
Simone Di Paola, Massimo Micaroni, Giuseppe Di Tullio, Roberto Buccione, Maria Di Girolamo. PLoS One 2012
68
33

Identification of PARP-7 substrates reveals a role for MARylation in microtubule control in ovarian cancer cells.
Lavanya H Palavalli Parsons, Sridevi Challa, Bryan A Gibson, Tulip Nandu, MiKayla S Stokes, Dan Huang, Jayanthi S Lea, W Lee Kraus. Elife 2021
17
33

A family of macrodomain proteins reverses cellular mono-ADP-ribosylation.
Gytis Jankevicius, Markus Hassler, Barbara Golia, Vladimir Rybin, Martin Zacharias, Gyula Timinszky, Andreas G Ladurner. Nat Struct Mol Biol 2013
226
33

Enabling drug discovery for the PARP protein family through the detection of mono-ADP-ribosylation.
Alvin Z Lu, Ryan Abo, Yue Ren, Bin Gui, Jan-Rung Mo, Danielle Blackwell, Tim Wigle, Heike Keilhack, Mario Niepel. Biochem Pharmacol 2019
23
33

Macrodomain-containing proteins are new mono-ADP-ribosylhydrolases.
Florian Rosenthal, Karla L H Feijs, Emilie Frugier, Mario Bonalli, Alexandra H Forst, Ralph Imhof, Hans C Winkler, David Fischer, Amedeo Caflisch, Paul O Hassa,[...]. Nat Struct Mol Biol 2013
227
33

A ribose-functionalized NAD+ with unexpected high activity and selectivity for protein poly-ADP-ribosylation.
Xiao-Nan Zhang, Qinqin Cheng, Jingwen Chen, Albert T Lam, Yanran Lu, Zhefu Dai, Hua Pei, Nikolai M Evdokimov, Stan G Louie, Yong Zhang. Nat Commun 2019
13
33

An HPF1/PARP1-Based Chemical Biology Strategy for Exploring ADP-Ribosylation.
Juan José Bonfiglio, Orsolya Leidecker, Helen Dauben, Edoardo José Longarini, Thomas Colby, Pablo San Segundo-Acosta, Kathryn A Perez, Ivan Matic. Cell 2020
25
33


Chemical proteomics reveals ADP-ribosylation of small GTPases during oxidative stress.
Nathan P Westcott, Joseph P Fernandez, Henrik Molina, Howard C Hang. Nat Chem Biol 2017
21
33

Monoclonal antibodies to poly(adenosine diphosphate ribose) recognize different structures.
H Kawamitsu, H Hoshino, H Okada, M Miwa, H Momoi, T Sugimura. Biochemistry 1984
191
33


Combining Chemical Genetics with Proximity-Dependent Labeling Reveals Cellular Targets of Poly(ADP-ribose) Polymerase 14 (PARP14).
Ian Carter-O'Connell, Anke Vermehren-Schmaedick, Haihong Jin, Rory K Morgan, Larry L David, Michael S Cohen. ACS Chem Biol 2018
29
33

Family-wide analysis of poly(ADP-ribose) polymerase activity.
Sejal Vyas, Ivan Matic, Lilen Uchima, Jenny Rood, Roko Zaja, Ronald T Hay, Ivan Ahel, Paul Chang. Nat Commun 2014
286
33

A systematic analysis of the PARP protein family identifies new functions critical for cell physiology.
Sejal Vyas, Melissa Chesarone-Cataldo, Tanya Todorova, Yun-Han Huang, Paul Chang. Nat Commun 2013
166
33

Proteome-wide identification of poly(ADP-Ribosyl)ation targets in different genotoxic stress responses.
Stephanie Jungmichel, Florian Rosenthal, Matthias Altmeyer, Jiri Lukas, Michael O Hottiger, Michael L Nielsen. Mol Cell 2013
232
33


PARP inhibitors: Synthetic lethality in the clinic.
Christopher J Lord, Alan Ashworth. Science 2017
22

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.
Jürgen Cox, Marco Y Hein, Christian A Luber, Igor Paron, Nagarjuna Nagaraj, Matthias Mann. Mol Cell Proteomics 2014
22

The Promise of Proteomics for the Study of ADP-Ribosylation.
Casey M Daniels, Shao-En Ong, Anthony K L Leung. Mol Cell 2015
138
22

Mapping Physiological ADP-Ribosylation Using Activated Ion Electron Transfer Dissociation.
Sara C Buch-Larsen, Ivo A Hendriks, Jean M Lodge, Martin Rykær, Benjamin Furtwängler, Evgenia Shishkova, Michael S Westphall, Joshua J Coon, Michael L Nielsen. Cell Rep 2020
40
22

Activation of PARP-1 by snoRNAs Controls Ribosome Biogenesis and Cell Growth via the RNA Helicase DDX21.
Dae-Seok Kim, Cristel V Camacho, Anusha Nagari, Venkat S Malladi, Sridevi Challa, W Lee Kraus. Mol Cell 2019
100
22

ADP-Ribosylation, a Multifaceted Posttranslational Modification Involved in the Control of Cell Physiology in Health and Disease.
Bernhard Lüscher, Mareike Bütepage, Laura Eckei, Sarah Krieg, Patricia Verheugd, Brian H Shilton. Chem Rev 2018
117
22

Clickable NAD analogues for labeling substrate proteins of poly(ADP-ribose) polymerases.
Hong Jiang, Jun Hyun Kim, Kristine M Frizzell, W Lee Kraus, Hening Lin. J Am Chem Soc 2010
84
22


Expression of the zinc-finger antiviral protein inhibits alphavirus replication.
Matthew J Bick, John-William N Carroll, Guangxia Gao, Stephen P Goff, Charles M Rice, Margaret R MacDonald. J Virol 2003
252
22

Comparative analysis of MACROD1, MACROD2 and TARG1 expression, localisation and interactome.
R Žaja, G Aydin, B E Lippok, R Feederle, B Lüscher, K L H Feijs. Sci Rep 2020
15
22

Coronavirus infection and PARP expression dysregulate the NAD metabolome: An actionable component of innate immunity.
Collin D Heer, Daniel J Sanderson, Lynden S Voth, Yousef M O Alhammad, Mark S Schmidt, Samuel A J Trammell, Stanley Perlman, Michael S Cohen, Anthony R Fehr, Charles Brenner. J Biol Chem 2020
32
22

Assessment of Intracellular Auto-Modification Levels of ARTD10 Using Mono-ADP-Ribose-Specific Macrodomains 2 and 3 of Murine Artd8.
Mareike Bütepage, Sarah Krieg, Laura Eckei, Jinyu Li, Giulia Rossetti, Patricia Verheugd, Bernhard Lüscher. Methods Mol Biol 2018
7
28

Analysis of Chromatin ADP-Ribosylation at the Genome-wide Level and at Specific Loci by ADPr-ChAP.
Giody Bartolomei, Mario Leutert, Massimiliano Manzo, Tuncay Baubec, Michael O Hottiger. Mol Cell 2016
33
22

Mitochondrial NAD+ Controls Nuclear ARTD1-Induced ADP-Ribosylation.
Ann-Katrin Hopp, Federico Teloni, Lavinia Bisceglie, Corentin Gondrand, Fabio Raith, Kathrin Nowak, Lukas Muskalla, Anna Howald, Patrick G A Pedrioli, Kai Johnsson,[...]. Mol Cell 2021
13
22


Regulation of insulin secretion by SIRT4, a mitochondrial ADP-ribosyltransferase.
Nidhi Ahuja, Bjoern Schwer, Stefania Carobbio, David Waltregny, Brian J North, Vincenzo Castronovo, Pierre Maechler, Eric Verdin. J Biol Chem 2007
293
22


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.