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List of co-cited articles
72 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Transcription shapes DNA replication initiation and termination in human cells.
Yu-Hung Chen, Sarah Keegan, Malik Kahli, Peter Tonzi, David Fenyö, Tony T Huang, Duncan J Smith. Nat Struct Mol Biol 2019
57
50



MCM2 promotes symmetric inheritance of modified histones during DNA replication.
Nataliya Petryk, Maria Dalby, Alice Wenger, Caroline B Stromme, Anne Strandsby, Robin Andersson, Anja Groth. Science 2018
108
37

Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading.
Heather K MacAlpine, Raluca Gordân, Sara K Powell, Alexander J Hartemink, David M MacAlpine. Genome Res 2010
204
37

DNA replication origins-where do we begin?
Marie-Noëlle Prioleau, David M MacAlpine. Genes Dev 2016
96
37

Human ORC/MCM density is low in active genes and correlates with replication time but does not delimit initiation zones.
Nina Kirstein, Alexander Buschle, Xia Wu, Stefan Krebs, Helmut Blum, Elisabeth Kremmer, Ina M Vorberg, Wolfgang Hammerschmidt, Laurent Lacroix, Olivier Hyrien,[...]. Elife 2021
8
37

Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing.
Gaetano Ivan Dellino, Davide Cittaro, Rossana Piccioni, Lucilla Luzi, Stefania Banfi, Simona Segalla, Matteo Cesaroni, Ramiro Mendoza-Maldonado, Mauro Giacca, Pier Giuseppe Pelicci. Genome Res 2013
101
37

FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing.
Magali Hennion, Jean-Michel Arbona, Laurent Lacroix, Corinne Cruaud, Bertrand Theulot, Benoît Le Tallec, Florence Proux, Xia Wu, Elizaveta Novikova, Stefan Engelen,[...]. Genome Biol 2020
16
37

Genome-wide analysis of the spatiotemporal regulation of firing and dormant replication origins in human cells.
Nozomi Sugimoto, Kazumitsu Maehara, Kazumasa Yoshida, Yasuyuki Ohkawa, Masatoshi Fujita. Nucleic Acids Res 2018
35
37

Replication landscape of the human genome.
Nataliya Petryk, Malik Kahli, Yves d'Aubenton-Carafa, Yan Jaszczyszyn, Yimin Shen, Maud Silvain, Claude Thermes, Chun-Long Chen, Olivier Hyrien. Nat Commun 2016
148
37

Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome.
Guillaume Guilbaud, Aurélien Rappailles, Antoine Baker, Chun-Long Chen, Alain Arneodo, Arach Goldar, Yves d'Aubenton-Carafa, Claude Thermes, Benjamin Audit, Olivier Hyrien. PLoS Comput Biol 2011
97
37

Transcription initiation activity sets replication origin efficiency in mammalian cells.
Joana Sequeira-Mendes, Ramón Díaz-Uriarte, Anwyn Apedaile, Derek Huntley, Neil Brockdorff, María Gómez. PLoS Genet 2009
169
37

Transcription-dependent regulation of replication dynamics modulates genome stability.
Marion Blin, Benoît Le Tallec, Viola Nähse, Mélanie Schmidt, Caroline Brossas, Gael A Millot, Marie-Noëlle Prioleau, Michelle Debatisse. Nat Struct Mol Biol 2019
38
37

Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells.
Daniela Cornacchia, Vishnu Dileep, Jean-Pierre Quivy, Rossana Foti, Federico Tili, Rachel Santarella-Mellwig, Claude Antony, Geneviève Almouzni, David M Gilbert, Sara B C Buonomo. EMBO J 2012
163
37

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program.
Rossana Foti, Stefano Gnan, Daniela Cornacchia, Vishnu Dileep, Aydan Bulut-Karslioglu, Sarah Diehl, Andreas Buness, Felix A Klein, Wolfgang Huber, Ewan Johnstone,[...]. Mol Cell 2016
106
37

Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex.
Shin-Ichiro Hiraga, Gina M Alvino, Fujung Chang, Hui-Yong Lian, Akila Sridhar, Takashi Kubota, Bonita J Brewer, Michael Weinreich, M K Raghuraman, Anne D Donaldson. Genes Dev 2014
144
37

MTBP phosphorylation controls DNA replication origin firing.
Pedro Ferreira, Verena Höfer, Nora Kronshage, Anika Marko, Karl-Uwe Reusswig, Bilal Tetik, Christoph Dießel, Kerstin Köhler, Nikolai Tschernoster, Janine Altmüller,[...]. Sci Rep 2021
7
42

An ATR and CHK1 kinase signaling mechanism that limits origin firing during unperturbed DNA replication.
Tatiana N Moiseeva, Yandong Yin, Michael J Calderon, Chenao Qian, Sandra Schamus-Haynes, Norie Sugitani, Hatice U Osmanbeyoglu, Eli Rothenberg, Simon C Watkins, Christopher J Bakkenist. Proc Natl Acad Sci U S A 2019
55
37

Treslin collaborates with TopBP1 in triggering the initiation of DNA replication.
Akiko Kumagai, Anna Shevchenko, Andrej Shevchenko, William G Dunphy. Cell 2010
164
37

The Cdk8/19-cyclin C transcription regulator functions in genome replication through metazoan Sld7.
Kerstin Köhler, Luis Sanchez-Pulido, Verena Höfer, Anika Marko, Chris P Ponting, Ambrosius P Snijders, Regina Feederle, Aloys Schepers, Dominik Boos. PLoS Biol 2019
19
37

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types.
Tyrone Ryba, Ichiro Hiratani, Junjie Lu, Mari Itoh, Michael Kulik, Jinfeng Zhang, Thomas C Schulz, Allan J Robins, Stephen Dalton, David M Gilbert. Genome Res 2010
385
25

Regulation of DNA replication within the immunoglobulin heavy-chain locus during B cell commitment.
Agnieszka Demczuk, Michel G Gauthier, Ingrid Veras, Settapong Kosiyatrakul, Carl L Schildkraut, Meinrad Busslinger, John Bechhoefer, Paolo Norio. PLoS Biol 2012
37
25

The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.
Franck Picard, Jean-Charles Cadoret, Benjamin Audit, Alain Arneodo, Adriana Alberti, Christophe Battail, Laurent Duret, Marie-Noelle Prioleau. PLoS Genet 2014
85
25

Eukaryotic DNA replication control: lock and load, then fire.
Dirk Remus, John F X Diffley. Curr Opin Cell Biol 2009
173
25


DNA replication origin interference increases the spacing between initiation events in human cells.
Ronald Lebofsky, Roland Heilig, Max Sonnleitner, Jean Weissenbach, Aaron Bensimon. Mol Biol Cell 2006
108
25


Dual Roles of Poly(dA:dT) Tracts in Replication Initiation and Fork Collapse.
Anthony Tubbs, Sriram Sridharan, Niek van Wietmarschen, Yaakov Maman, Elsa Callen, Andre Stanlie, Wei Wu, Xia Wu, Amanda Day, Nancy Wong,[...]. Cell 2018
92
25

Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.
Jiao Sima, Abhijit Chakraborty, Vishnu Dileep, Marco Michalski, Kyle N Klein, Nicolas P Holcomb, Jesse L Turner, Michelle T Paulsen, Juan Carlos Rivera-Mulia, Claudia Trevilla-Garcia,[...]. Cell 2019
79
25

Histone H4K20 methylation mediated chromatin compaction threshold ensures genome integrity by limiting DNA replication licensing.
Muhammad Shoaib, David Walter, Peter J Gillespie, Fanny Izard, Birthe Fahrenkrog, David Lleres, Mads Lerdrup, Jens Vilstrup Johansen, Klaus Hansen, Eric Julien,[...]. Nat Commun 2018
47
25


DNA replication timing.
Nicholas Rhind, David M Gilbert. Cold Spring Harb Perspect Biol 2013
193
25

H2A.Z facilitates licensing and activation of early replication origins.
Haizhen Long, Liwei Zhang, Mengjie Lv, Zengqi Wen, Wenhao Zhang, Xiulan Chen, Peitao Zhang, Tongqing Li, Luyuan Chang, Caiwei Jin,[...]. Nature 2020
57
25

The chromatin environment shapes DNA replication origin organization and defines origin classes.
Christelle Cayrou, Benoit Ballester, Isabelle Peiffer, Romain Fenouil, Philippe Coulombe, Jean-Christophe Andrau, Jacques van Helden, Marcel Méchali. Genome Res 2015
94
25

Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins.
Larry D Mesner, Veena Valsakumar, Marcin Cieslik, Rebecca Pickin, Joyce L Hamlin, Stefan Bekiranov. Genome Res 2013
54
25

A predictable conserved DNA base composition signature defines human core DNA replication origins.
Ildem Akerman, Bahar Kasaai, Alina Bazarova, Pau Biak Sang, Isabelle Peiffer, Marie Artufel, Romain Derelle, Gabrielle Smith, Marta Rodriguez-Martinez, Manuela Romano,[...]. Nat Commun 2020
10
25

Quantitative, genome-wide analysis of eukaryotic replication initiation and termination.
Sean R McGuffee, Duncan J Smith, Iestyn Whitehouse. Mol Cell 2013
85
25


Genome-wide depletion of replication initiation events in highly transcribed regions.
Melvenia M Martin, Michael Ryan, RyangGuk Kim, Anna L Zakas, Haiqing Fu, Chii Mei Lin, William C Reinhold, Sean R Davis, Sven Bilke, Hongfang Liu,[...]. Genome Res 2011
91
25

Multiscale analysis of genome-wide replication timing profiles using a wavelet-based signal-processing algorithm.
Benjamin Audit, Antoine Baker, Chun-Long Chen, Aurélien Rappailles, Guillaume Guilbaud, Hanna Julienne, Arach Goldar, Yves d'Aubenton-Carafa, Olivier Hyrien, Claude Thermes,[...]. Nat Protoc 2013
29
25

Genome-wide studies highlight indirect links between human replication origins and gene regulation.
Jean-Charles Cadoret, Françoise Meisch, Vahideh Hassan-Zadeh, Isabelle Luyten, Claire Guillet, Laurent Duret, Hadi Quesneville, Marie-Noëlle Prioleau. Proc Natl Acad Sci U S A 2008
208
25

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads.
Carolin A Müller, Michael A Boemo, Paolo Spingardi, Benedikt M Kessler, Skirmantas Kriaucionis, Jared T Simpson, Conrad A Nieduszynski. Nat Methods 2019
39
25

Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.
Emilie Besnard, Amélie Babled, Laure Lapasset, Ollivier Milhavet, Hugues Parrinello, Christelle Dantec, Jean-Michel Marin, Jean-Marc Lemaitre. Nat Struct Mol Biol 2012
254
25


Genome-wide identification and characterisation of human DNA replication origins by initiation site sequencing (ini-seq).
Alexander R Langley, Stefan Gräf, James C Smith, Torsten Krude. Nucleic Acids Res 2016
45
25


Human origin recognition complex binds preferentially to G-quadruplex-preferable RNA and single-stranded DNA.
Shoko Hoshina, Kei Yura, Honami Teranishi, Noriko Kiyasu, Ayumi Tominaga, Haruka Kadoma, Ayaka Nakatsuka, Tomoko Kunichika, Chikashi Obuse, Shou Waga. J Biol Chem 2013
61
25


Involvement of G-quadruplex regions in mammalian replication origin activity.
Paulina Prorok, Marie Artufel, Antoine Aze, Philippe Coulombe, Isabelle Peiffer, Laurent Lacroix, Aurore Guédin, Jean-Louis Mergny, Julia Damaschke, Aloys Schepers,[...]. Nat Commun 2019
62
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.