A citation-based method for searching scientific literature

Liting Song, Shaojun Pan, Zichao Zhang, Longhao Jia, Wei-Hua Chen, Xing-Ming Zhao. Nucleic Acids Res 2021
Times Cited: 2







List of co-cited articles
2 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


An anatomically comprehensive atlas of the adult human brain transcriptome.
Michael J Hawrylycz, Ed S Lein, Angela L Guillozet-Bongaarts, Elaine H Shen, Lydia Ng, Jeremy A Miller, Louie N van de Lagemaat, Kimberly A Smith, Amanda Ebbert, Zackery L Riley,[...]. Nature 2012
100

Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis.
Ulrich Pfisterer, Viktor Petukhov, Samuel Demharter, Johanna Meichsner, Jonatan J Thompson, Mykhailo Y Batiuk, Andrea Asenjo-Martinez, Navneet A Vasistha, Ashish Thakur, Jens Mikkelsen,[...]. Nat Commun 2020
10
100

Perspectives on ENCODE.
Michael P Snyder, Thomas R Gingeras, Jill E Moore, Zhiping Weng, Mark B Gerstein, Bing Ren, Ross C Hardison, John A Stamatoyannopoulos, Brenton R Graveley, Elise A Feingold,[...]. Nature 2020
28
50

Comprehensive functional genomic resource and integrative model for the human brain.
Daifeng Wang, Shuang Liu, Jonathan Warrell, Hyejung Won, Xu Shi, Fabio C P Navarro, Declan Clarke, Mengting Gu, Prashant Emani, Yucheng T Yang,[...]. Science 2018
214
50

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
50

Genetic and epigenetic fine mapping of causal autoimmune disease variants.
Kyle Kai-How Farh, Alexander Marson, Jiang Zhu, Markus Kleinewietfeld, William J Housley, Samantha Beik, Noam Shoresh, Holly Whitton, Russell J H Ryan, Alexander A Shishkin,[...]. Nature 2015
926
50

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
50


Chromatin accessibility dynamics in a model of human forebrain development.
Alexandro E Trevino, Nasa Sinnott-Armstrong, Jimena Andersen, Se-Jin Yoon, Nina Huber, Jonathan K Pritchard, Howard Y Chang, William J Greenleaf, Sergiu P Pașca. Science 2020
36
50

The Consortium to Establish a Registry for Alzheimer's Disease (CERAD). Part II. Standardization of the neuropathologic assessment of Alzheimer's disease.
S S Mirra, A Heyman, D McKeel, S M Sumi, B J Crain, L M Brownlee, F S Vogel, J P Hughes, G van Belle, L Berg. Neurology 1991
50

RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.
Kok Hao Chen, Alistair N Boettiger, Jeffrey R Moffitt, Siyuan Wang, Xiaowei Zhuang. Science 2015
655
50

SpaGE: Spatial Gene Enhancement using scRNA-seq.
Tamim Abdelaal, Soufiane Mourragui, Ahmed Mahfouz, Marcel J T Reinders. Nucleic Acids Res 2020
6
50

Single-cell full-length total RNA sequencing uncovers dynamics of recursive splicing and enhancer RNAs.
Tetsutaro Hayashi, Haruka Ozaki, Yohei Sasagawa, Mana Umeda, Hiroki Danno, Itoshi Nikaido. Nat Commun 2018
72
50

A wellness study of 108 individuals using personal, dense, dynamic data clouds.
Nathan D Price, Andrew T Magis, John C Earls, Gustavo Glusman, Roie Levy, Christopher Lausted, Daniel T McDonald, Ulrike Kusebauch, Christopher L Moss, Yong Zhou,[...]. Nat Biotechnol 2017
169
50

SpatialDB: a database for spatially resolved transcriptomes.
Zhen Fan, Runsheng Chen, Xiaowei Chen. Nucleic Acids Res 2020
11
50

The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
50

Dimension reduction techniques for the integrative analysis of multi-omics data.
Chen Meng, Oana A Zeleznik, Gerhard G Thallinger, Bernhard Kuster, Amin M Gholami, Aedín C Culhane. Brief Bioinform 2016
122
50

Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells.
Mridusmita Saikia, Philip Burnham, Sara H Keshavjee, Michael F Z Wang, Michael Heyang, Pablo Moral-Lopez, Meleana M Hinchman, Charles G Danko, John S L Parker, Iwijn De Vlaminck. Nat Methods 2019
30
50


Multilevel omics for the discovery of biomarkers and therapeutic targets for stroke.
Joan Montaner, Laura Ramiro, Alba Simats, Steffen Tiedt, Konstantinos Makris, Glen C Jickling, Stephanie Debette, Jean-Charles Sanchez, Alejandro Bustamante. Nat Rev Neurol 2020
23
50

A survey of human brain transcriptome diversity at the single cell level.
Spyros Darmanis, Steven A Sloan, Ye Zhang, Martin Enge, Christine Caneda, Lawrence M Shuer, Melanie G Hayden Gephart, Ben A Barres, Stephen R Quake. Proc Natl Acad Sci U S A 2015
529
50

Multi-omic and multi-view clustering algorithms: review and cancer benchmark.
Nimrod Rappoport, Ron Shamir. Nucleic Acids Res 2018
85
50

Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity.
Joshua D Welch, Velina Kozareva, Ashley Ferreira, Charles Vanderburg, Carly Martin, Evan Z Macosko. Cell 2019
187
50

Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease.
Xianjun Dong, Zhixiang Liao, David Gritsch, Yavor Hadzhiev, Yunfei Bai, Joseph J Locascio, Boris Guennewig, Ganqiang Liu, Cornelis Blauwendraat, Tao Wang,[...]. Nat Neurosci 2018
27
50


The NIH Common Fund/Roadmap Epigenomics Program: Successes of a comprehensive consortium.
John S Satterlee, Lisa H Chadwick, Frederick L Tyson, Kim McAllister, Jill Beaver, Linda Birnbaum, Nora D Volkow, Elizabeth L Wilder, James M Anderson, Ananda L Roy. Sci Adv 2019
9
50

Multi-omics Data Integration, Interpretation, and Its Application.
Indhupriya Subramanian, Srikant Verma, Shiva Kumar, Abhay Jere, Krishanpal Anamika. Bioinform Biol Insights 2020
80
50

Genome-wide meta-analysis identifies new loci and functional pathways influencing Alzheimer's disease risk.
Iris E Jansen, Jeanne E Savage, Kyoko Watanabe, Julien Bryois, Dylan M Williams, Stacy Steinberg, Julia Sealock, Ida K Karlsson, Sara Hägg, Lavinia Athanasiu,[...]. Nat Genet 2019
462
50

GWAS significance thresholds for deep phenotyping studies can depend upon minor allele frequencies and sample size.
Huma Asif, Ney Alliey-Rodriguez, Sarah Keedy, Carol A Tamminga, John A Sweeney, Godfrey Pearlson, Brett A Clementz, Matcheri S Keshavan, Peter Buckley, Chunyu Liu,[...]. Mol Psychiatry 2020
2
50

The Allen Brain Atlas: 5 years and beyond.
Allan R Jones, Caroline C Overly, Susan M Sunkin. Nat Rev Neurosci 2009
170
50

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.
Jie Wang, Jiali Zhuang, Sowmya Iyer, Xin-Ying Lin, Melissa C Greven, Bong-Hyun Kim, Jill Moore, Brian G Pierce, Xianjun Dong, Daniel Virgil,[...]. Nucleic Acids Res 2013
178
50

A longitudinal big data approach for precision health.
Sophia Miryam Schüssler-Fiorenza Rose, Kévin Contrepois, Kegan J Moneghetti, Wenyu Zhou, Tejaswini Mishra, Samson Mataraso, Orit Dagan-Rosenfeld, Ariel B Ganz, Jessilyn Dunn, Daniel Hornburg,[...]. Nat Med 2019
113
50

Cell-type-specific 3D epigenomes in the developing human cortex.
Michael Song, Mark-Phillip Pebworth, Xiaoyu Yang, Armen Abnousi, Changxu Fan, Jia Wen, Jonathan D Rosen, Mayank N K Choudhary, Xiekui Cui, Ian R Jones,[...]. Nature 2020
6
50

Convergence of placenta biology and genetic risk for schizophrenia.
Gianluca Ursini, Giovanna Punzi, Qiang Chen, Stefano Marenco, Joshua F Robinson, Annamaria Porcelli, Emily G Hamilton, Marina Mitjans, Giancarlo Maddalena, Martin Begemann,[...]. Nat Med 2018
101
50

Machine learning approaches to predict lupus disease activity from gene expression data.
Brian Kegerreis, Michelle D Catalina, Prathyusha Bachali, Nicholas S Geraci, Adam C Labonte, Chen Zeng, Nathaniel Stearrett, Keith A Crandall, Peter E Lipsky, Amrie C Grammer. Sci Rep 2019
12
50

The gut microbiome regulates the increases in depressive-type behaviors and in inflammatory processes in the ventral hippocampus of stress vulnerable rats.
Jiah Pearson-Leary, Chunyu Zhao, Kyle Bittinger, Darrell Eacret, Sandra Luz, Abigail S Vigderman, Gabriel Dayanim, Seema Bhatnagar. Mol Psychiatry 2020
51
50

Profiling gene expression in the human dentate gyrus granule cell layer reveals insights into schizophrenia and its genetic risk.
Andrew E Jaffe, Daniel J Hoeppner, Takeshi Saito, Lou Blanpain, Joy Ukaigwe, Emily E Burke, Leonardo Collado-Torres, Ran Tao, Katsunori Tajinda, Kristen R Maynard,[...]. Nat Neurosci 2020
18
50

Integrative functional genomic analysis of human brain development and neuropsychiatric risks.
Mingfeng Li, Gabriel Santpere, Yuka Imamura Kawasawa, Oleg V Evgrafov, Forrest O Gulden, Sirisha Pochareddy, Susan M Sunkin, Zhen Li, Yurae Shin, Ying Zhu,[...]. Science 2018
178
50

Discovering and linking public omics data sets using the Omics Discovery Index.
Yasset Perez-Riverol, Mingze Bai, Felipe da Veiga Leprevost, Silvano Squizzato, Young Mi Park, Kenneth Haug, Adam J Carroll, Dylan Spalding, Justin Paschall, Mingxun Wang,[...]. Nat Biotechnol 2017
74
50

Single-cell methylomes identify neuronal subtypes and regulatory elements in mammalian cortex.
Chongyuan Luo, Christopher L Keown, Laurie Kurihara, Jingtian Zhou, Yupeng He, Junhao Li, Rosa Castanon, Jacinta Lucero, Joseph R Nery, Justin P Sandoval,[...]. Science 2017
174
50

Brain cell type-specific enhancer-promoter interactome maps and disease-risk association.
Alexi Nott, Inge R Holtman, Nicole G Coufal, Johannes C M Schlachetzki, Miao Yu, Rong Hu, Claudia Z Han, Monique Pena, Jiayang Xiao, Yin Wu,[...]. Science 2019
116
50

Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder.
Michael J Gandal, Pan Zhang, Evi Hadjimichael, Rebecca L Walker, Chao Chen, Shuang Liu, Hyejung Won, Harm van Bakel, Merina Varghese, Yongjun Wang,[...]. Science 2018
298
50

Update of the FANTOM web resource: high resolution transcriptome of diverse cell types in mammals.
Marina Lizio, Jayson Harshbarger, Imad Abugessaisa, Shuei Noguchi, Atsushi Kondo, Jessica Severin, Chris Mungall, David Arenillas, Anthony Mathelier, Yulia A Medvedeva,[...]. Nucleic Acids Res 2017
65
50

Single-cell RNA-seq transcriptome analysis of linear and circular RNAs in mouse preimplantation embryos.
Xiaoying Fan, Xiannian Zhang, Xinglong Wu, Hongshan Guo, Yuqiong Hu, Fuchou Tang, Yanyi Huang. Genome Biol 2015
189
50

Mapping DNA methylation across development, genotype and schizophrenia in the human frontal cortex.
Andrew E Jaffe, Yuan Gao, Amy Deep-Soboslay, Ran Tao, Thomas M Hyde, Daniel R Weinberger, Joel E Kleinman. Nat Neurosci 2016
232
50

Causal modeling in a multi-omic setting: insights from GAW20.
Jonathan Auerbach, Richard Howey, Lai Jiang, Anne Justice, Liming Li, Karim Oualkacha, Sergi Sayols-Baixeras, Stella W Aslibekyan. BMC Genet 2018
4
50

Joint profiling of DNA methylation and chromatin architecture in single cells.
Guoqiang Li, Yaping Liu, Yanxiao Zhang, Naoki Kubo, Miao Yu, Rongxin Fang, Manolis Kellis, Bing Ren. Nat Methods 2019
41
50

Effective detection of variation in single-cell transcriptomes using MATQ-seq.
Kuanwei Sheng, Wenjian Cao, Yichi Niu, Qing Deng, Chenghang Zong. Nat Methods 2017
69
50

mixOmics: An R package for 'omics feature selection and multiple data integration.
Florian Rohart, Benoît Gautier, Amrit Singh, Kim-Anh Lê Cao. PLoS Comput Biol 2017
690
50

Genetic effects on gene expression across human tissues.
Alexis Battle, Christopher D Brown, Barbara E Engelhardt, Stephen B Montgomery. Nature 2017
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.