A citation-based method for searching scientific literature

Derrick J Y Tan, Fernaldo Richtia Winnerdy, Kah Wai Lim, Anh Tuân Phan. Nucleic Acids Res 2020
Times Cited: 6







List of co-cited articles
42 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Duplex-Guided Refolding into Novel G-Quadruplex (3+1) Hybrid Conformations.
Beatrice Karg, Swantje Mohr, Klaus Weisz. Angew Chem Int Ed Engl 2019
17
83

Duplex stem-loop-containing quadruplex motifs in the human genome: a combined genomic and structural study.
Kah Wai Lim, Piroon Jenjaroenpun, Zhen Jie Low, Zi Jian Khong, Yi Siang Ng, Vladimir Andreevich Kuznetsov, Anh Tuân Phan. Nucleic Acids Res 2015
34
83

Duplex formation in a G-quadruplex bulge.
Thi Quynh Ngoc Nguyen, Kah Wai Lim, Anh Tuân Phan. Nucleic Acids Res 2020
13
83

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
537
83

Structural basis of DNA quadruplex-duplex junction formation.
Kah Wai Lim, Anh Tuân Phan. Angew Chem Int Ed Engl 2013
73
66

The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
178
66

Structural Insights into the Quadruplex-Duplex 3' Interface Formed from a Telomeric Repeat: A Potential Molecular Target.
Irene Russo Krauss, Sneha Ramaswamy, Stephen Neidle, Shozeb Haider, Gary N Parkinson. J Am Chem Soc 2016
36
50

A New G-Quadruplex with Hairpin Loop Immediately Upstream of the Human BCL2 P1 Promoter Modulates Transcription.
Buket Onel, Megan Carver, Guanhui Wu, Daria Timonina, Salil Kalarn, Marti Larriva, Danzhou Yang. J Am Chem Soc 2016
64
50


Major G-Quadruplex Form of HIV-1 LTR Reveals a (3 + 1) Folding Topology Containing a Stem-Loop.
Elena Butovskaya, Brahim Heddi, Blaž Bakalar, Sara N Richter, Anh Tuân Phan. J Am Chem Soc 2018
35
50

Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter.
Anjali Sengar, J Jeya Vandana, Vicki S Chambers, Marco Di Antonio, Fernaldo Richtia Winnerdy, Shankar Balasubramanian, Anh Tuân Phan. Nucleic Acids Res 2019
22
50

QGRS Mapper: a web-based server for predicting G-quadruplexes in nucleotide sequences.
Oleg Kikin, Lawrence D'Antonio, Paramjeet S Bagga. Nucleic Acids Res 2006
467
50

Chemical and structural studies provide a mechanistic basis for recognition of the MYC G-quadruplex.
David R Calabrese, Xiang Chen, Elena C Leon, Snehal M Gaikwad, Zaw Phyo, William M Hewitt, Stephanie Alden, Thomas A Hilimire, Fahu He, Aleksandra M Michalowski,[...]. Nat Commun 2018
66
50

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
50

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
33

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
33

DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential.
Robert Hänsel-Hertsch, Marco Di Antonio, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2017
380
33

High-resolution three-dimensional NMR structure of the KRAS proto-oncogene promoter reveals key features of a G-quadruplex involved in transcriptional regulation.
Abdelaziz Kerkour, Julien Marquevielle, Stefaniia Ivashchenko, Liliya A Yatsunyk, Jean-Louis Mergny, Gilmar F Salgado. J Biol Chem 2017
38
33

Stabilization of G-quadruplex in the BCL2 promoter region in double-stranded DNA by invading short PNAs.
Mykola I Onyshchenko, Timur I Gaynutdinov, Ethan A Englund, Daniel H Appella, Ronald D Neumann, Igor G Panyutin. Nucleic Acids Res 2009
50
33


The application of DNA and RNA G-quadruplexes to therapeutic medicines.
Gavin W Collie, Gary N Parkinson. Chem Soc Rev 2011
368
33



Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter.
Anh Tuân Phan, Vitaly Kuryavyi, Hai Yan Gaw, Dinshaw J Patel. Nat Chem Biol 2005
342
33


Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
33

Molecular Recognition of the Hybrid-2 Human Telomeric G-Quadruplex by Epiberberine: Insights into Conversion of Telomeric G-Quadruplex Structures.
Clement Lin, Guanhui Wu, Kaibo Wang, Buket Onel, Saburo Sakai, Yong Shao, Danzhou Yang. Angew Chem Int Ed Engl 2018
32
33

Joining of multiple duplex stems at a single quadruplex loop.
Kah Wai Lim, Thi Quynh Ngoc Nguyen, Anh Tuân Phan. J Am Chem Soc 2014
25
33

Quadruplex-Duplex Junction: A High-Affinity Binding Site for Indoloquinoline Ligands.
Yoanes Maria Vianney, Pit Preckwinkel, Swantje Mohr, Klaus Weisz. Chemistry 2020
6
33


Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
670
33

Selective Targeting of Guanine-Vacancy-Bearing G-Quadruplexes by G-Quartet Complementation and Stabilization with a Guanine-Peptide Conjugate.
Yi-de He, Ke-Wei Zheng, Cui-Jiao Wen, Xin-Min Li, Jia-Yuan Gong, Yu-Hua Hao, Yong Zhao, Zheng Tan. J Am Chem Soc 2020
15
33

G-Quadruplexes: Prediction, Characterization, and Biological Application.
Chun Kit Kwok, Catherine J Merrick. Trends Biotechnol 2017
143
33

Bulges in G-quadruplexes: broadening the definition of G-quadruplex-forming sequences.
Vineeth Thachappilly Mukundan, Anh Tuân Phan. J Am Chem Soc 2013
172
33

An RNA G-quadruplex in the 5' UTR of the NRAS proto-oncogene modulates translation.
Sunita Kumari, Anthony Bugaut, Julian L Huppert, Shankar Balasubramanian. Nat Chem Biol 2007
509
33

The emerging structural complexity of G-quadruplex RNAs.
Michael T Banco, Adrian R Ferré-D'Amaré. RNA 2021
10
33


Guanine-vacancy-bearing G-quadruplexes responsive to guanine derivatives.
Xin-min Li, Ke-wei Zheng, Jia-yu Zhang, Hong-he Liu, Yi-de He, Bi-feng Yuan, Yu-hua Hao, Zheng Tan. Proc Natl Acad Sci U S A 2015
64
33

CX-5461 is a DNA G-quadruplex stabilizer with selective lethality in BRCA1/2 deficient tumours.
Hong Xu, Marco Di Antonio, Steven McKinney, Veena Mathew, Brandon Ho, Nigel J O'Neil, Nancy Dos Santos, Jennifer Silvester, Vivien Wei, Jessica Garcia,[...]. Nat Commun 2017
209
33

Folding Kinetics of G-Quadruplexes: Duplex Stem Loops Drive and Accelerate G-Quadruplex Folding.
Thi Quynh Ngoc Nguyen, Kah Wai Lim, Anh Tuân Phan. J Phys Chem B 2020
11
33

Thermal stability of DNA quadruplex-duplex hybrids.
Kah Wai Lim, Zi Jian Khong, Anh Tuân Phan. Biochemistry 2014
34
33

Recent Progress of Targeted G-Quadruplex-Preferred Ligands Toward Cancer Therapy.
Sefan Asamitsu, Shunsuke Obata, Zutao Yu, Toshikazu Bando, Hiroshi Sugiyama. Molecules 2019
116
33

NMR solution structure of the major G-quadruplex structure formed in the human BCL2 promoter region.
Jixun Dai, Ding Chen, Roger A Jones, Laurence H Hurley, Danzhou Yang. Nucleic Acids Res 2006
243
16

In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei.
C Schaffitzel, I Berger, J Postberg, J Hanes, H J Lipps, A Plückthun. Proc Natl Acad Sci U S A 2001
448
16

Finding the Right Candidate for the Right Position: A Fast NMR-Assisted Combinatorial Method for Optimizing Nucleic Acids Binders.
Ester Jiménez-Moreno, Laura Montalvillo-Jiménez, Andrés G Santana, Ana M Gómez, Gonzalo Jiménez-Osés, Francisco Corzana, Agatha Bastida, Jesús Jiménez-Barbero, Francisco Javier Cañada, Irene Gómez-Pinto,[...]. J Am Chem Soc 2016
4
25

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
16

Topology of a DNA G-quadruplex structure formed in the HIV-1 promoter: a potential target for anti-HIV drug development.
Samir Amrane, Abdelaziz Kerkour, Amina Bedrat, Brune Vialet, Marie-Line Andreola, Jean-Louis Mergny. J Am Chem Soc 2014
88
16

Ion selective folding of loop domains in a potent anti-HIV oligonucleotide.
N Jing, R F Rando, Y Pommier, M E Hogan. Biochemistry 1997
121
16

Targeting DNA G-quadruplex structures with peptide nucleic acids.
Igor G Panyutin, Mykola I Onyshchenko, Ethan A Englund, Daniel H Appella, Ronald D Neumann. Curr Pharm Des 2012
11
16

A dynamic G-quadruplex region regulates the HIV-1 long terminal repeat promoter.
Rosalba Perrone, Matteo Nadai, Ilaria Frasson, Jerrod A Poe, Elena Butovskaya, Thomas E Smithgall, Manlio Palumbo, Giorgio Palù, Sara N Richter. J Med Chem 2013
108
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.