Patricia Mirela-Bota, Joaquim Aguirre-Plans, Alberto Meseguer, Cristiano Galletti, Joan Segura, Joan Planas-Iglesias, Javi Garcia-Garcia, Emre Guney, Baldo Oliva, Narcis Fernandez-Fuentes. J Mol Biol 2021
Times Cited: 2
Times Cited: 2
Times Cited
Times Co-cited
Similarity
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RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive.
Yana Rose, Jose M Duarte, Robert Lowe, Joan Segura, Chunxiao Bi, Charmi Bhikadiya, Li Chen, Alexander S Rose, Sebastian Bittrich, Stephen K Burley,[...]. J Mol Biol 2021
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PolarProtDb: A Database of Transmembrane and Secreted Proteins showing Apical-Basal Polarity.
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aScan: A Novel Method for the Study of Allele Specific Expression in Single Individuals.
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MEDUSA: Prediction of Protein Flexibility from Sequence.
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RiPPMiner-Genome: A Web Resource for Automated Prediction of Crosslinked Chemical Structures of RiPPs by Genome Mining.
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BetAware-Deep: An Accurate Web Server for Discrimination and Topology Prediction of Prokaryotic Transmembrane β-barrel Proteins.
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ELASPIC2 (EL2): Combining Contextualized Language Models and Graph Neural Networks to Predict Effects of Mutations.
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Cppsite 2.0: An Available Database of Experimentally Validated Cell-Penetrating Peptides Predicting their Secondary and Tertiary Structures.
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GCsnap: Interactive Snapshots for the Comparison of Protein-Coding Genomic Contexts.
Joana Pereira. J Mol Biol 2021
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ADDRESS: A Database of Disease-associated Human Variants Incorporating Protein Structure and Folding Stabilities.
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Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics.
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MPBuilder: A PyMOL Plugin for Building and Refinement of Solubilized Membrane Proteins Against Small Angle X-ray Scattering Data.
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FunCoup 5: Functional Association Networks in All Domains of Life, Supporting Directed Links and Tissue-Specificity.
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MPTherm-pred: Analysis and Prediction of Thermal Stability Changes upon Mutations in Transmembrane Proteins.
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A Kulandaisamy, Jan Zaucha, Dmitrij Frishman, M Michael Gromiha. J Mol Biol 2021
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ANuPP: A Versatile Tool to Predict Aggregation Nucleating Regions in Peptides and Proteins.
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ncRNAVar: A Manually Curated Database for Identification of Noncoding RNA Variants Associated with Human Diseases.
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ModFlex: Towards Function Focused Protein Modeling.
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CD-NuSS: A Web Server for the Automated Secondary Structural Characterization of the Nucleic Acids from Circular Dichroism Spectra Using Extreme Gradient Boosting Decision-Tree, Neural Network and Kohonen Algorithms.
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Constrained Standardization of Count Data from Massive Parallel Sequencing.
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GeneCaRNA: A Comprehensive Gene-centric Database of Human Non-coding RNAs in the GeneCards Suite.
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The DBSAV Database: Predicting Deleteriousness of Single Amino Acid Variations in the Human Proteome.
Jimin Pei, Nick V Grishin. J Mol Biol 2021
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geno5mC: A Database to Explore the Association between Genetic Variation (SNPs) and CpG Methylation in the Human Genome.
C Gómez-Martín, E Aparicio-Puerta, J M Medina, Guillermo Barturen, J L Oliver, M Hackenberg. J Mol Biol 2021
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Prediction of continuous B-cell epitopes in an antigen using recurrent neural network.
Sudipto Saha, G P S Raghava. Proteins 2006
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Denovo designing, retro-combinatorial synthesis, and molecular dynamics analysis identify novel antiviral VTRM1.1 against RNA-dependent RNA polymerase of SARS CoV2 virus.
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Typhoidal Salmonella: Distinctive virulence factors and pathogenesis.
Rebecca Johnson, Elli Mylona, Gad Frankel. Cell Microbiol 2018
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In silico epitope identification of unique multidrug resistance proteins from Salmonella Typhi for vaccine development.
Thomas Jebastin, Sundarabaalaji Narayanan. Comput Biol Chem 2019
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NetCTLpan: pan-specific MHC class I pathway epitope predictions.
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Secretion of bacterial lipoproteins: through the cytoplasmic membrane, the periplasm and beyond.
Wolfram R Zückert. Biochim Biophys Acta 2014
Wolfram R Zückert. Biochim Biophys Acta 2014
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Designing of a next generation multiepitope based vaccine (MEV) against SARS-COV-2: Immunoinformatics and in silico approaches.
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Nicolas Rapin, Ole Lund, Massimo Bernaschi, Filippo Castiglione. PLoS One 2010
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Salmonella vaccines for use in humans: present and future perspectives.
Helen S Garmory, Katherine A Brown, Richard W Titball. FEMS Microbiol Rev 2002
Helen S Garmory, Katherine A Brown, Richard W Titball. FEMS Microbiol Rev 2002
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SignalP 4.0: discriminating signal peptides from transmembrane regions.
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PatchDock and SymmDock: servers for rigid and symmetric docking.
Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J Wolfson. Nucleic Acids Res 2005
Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J Wolfson. Nucleic Acids Res 2005
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Immunoinformatic approach to design a multiepitope vaccine targeting non-mutational hotspot regions of structural and non-structural proteins of the SARS CoV2.
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Ashkan Safavi, Amirhosein Kefayat, Elham Mahdevar, Ardavan Abiri, Fatemeh Ghahremani. Vaccine 2020
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Multi-epitope DnaK peptide vaccine against S.Typhi: An in silico approach.
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DEG 10, an update of the database of essential genes that includes both protein-coding genes and noncoding genomic elements.
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Production, purification, and in vivo evaluation of a novel multiepitope peptide vaccine consisted of immunodominant epitopes of SYCP1 and ACRBP antigens as a prophylactic melanoma vaccine.
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Live Attenuated Human Salmonella Vaccine Candidates: Tracking the Pathogen in Natural Infection and Stimulation of Host Immunity.
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James E Galen, Amanda D Buskirk, Sharon M Tennant, Marcela F Pasetti. EcoSal Plus 2016
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Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
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A Krogh, B Larsson, G von Heijne, E L Sonnhammer. J Mol Biol 2001
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JCat: a novel tool to adapt codon usage of a target gene to its potential expression host.
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Chin-Sheng Yu, Chih-Jen Lin, Jenn-Kang Hwang. Protein Sci 2004
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