A citation-based method for searching scientific literature

Bryan R Conway, Eoin D O'Sullivan, Carolynn Cairns, James O'Sullivan, Daniel J Simpson, Angela Salzano, Katie Connor, Peng Ding, Duncan Humphries, Kevin Stewart, Oliver Teenan, Riinu Pius, Neil C Henderson, Cécile Bénézech, Prakash Ramachandran, David Ferenbach, Jeremy Hughes, Tamir Chandra, Laura Denby. J Am Soc Nephrol 2020
Times Cited: 40







List of co-cited articles
308 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease.
Jihwan Park, Rojesh Shrestha, Chengxiang Qiu, Ayano Kondo, Shizheng Huang, Max Werth, Mingyao Li, Jonathan Barasch, Katalin Suszták. Science 2018
429
30

Decoding myofibroblast origins in human kidney fibrosis.
Christoph Kuppe, Mahmoud M Ibrahim, Jennifer Kranz, Xiaoting Zhang, Susanne Ziegler, Javier Perales-Patón, Jitske Jansen, Katharina C Reimer, James R Smith, Ross Dobie,[...]. Nature 2021
100
27

The single-cell transcriptomic landscape of early human diabetic nephropathy.
Parker C Wilson, Haojia Wu, Yuhei Kirita, Kohei Uchimura, Nicolas Ledru, Helmut G Rennke, Paul A Welling, Sushrut S Waikar, Benjamin D Humphreys. Proc Natl Acad Sci U S A 2019
119
25

Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.
Yuhei Kirita, Haojia Wu, Kohei Uchimura, Parker C Wilson, Benjamin D Humphreys. Proc Natl Acad Sci U S A 2020
80
25

Single-Cell RNA Sequencing Identifies Candidate Renal Resident Macrophage Gene Expression Signatures across Species.
Kurt A Zimmerman, Melissa R Bentley, Jeremie M Lever, Zhang Li, David K Crossman, Cheng Jack Song, Shanrun Liu, Michael R Crowley, James F George, Michal Mrug,[...]. J Am Soc Nephrol 2019
55
25

Single-Cell Transcriptomics of a Human Kidney Allograft Biopsy Specimen Defines a Diverse Inflammatory Response.
Haojia Wu, Andrew F Malone, Erinn L Donnelly, Yuhei Kirita, Kohei Uchimura, Sai M Ramakrishnan, Joseph P Gaut, Benjamin D Humphreys. J Am Soc Nephrol 2018
154
22

Spatiotemporal immune zonation of the human kidney.
Benjamin J Stewart, John R Ferdinand, Matthew D Young, Thomas J Mitchell, Kevin W Loudon, Alexandra M Riding, Nathan Richoz, Gordon L Frazer, Joy U L Staniforth, Felipe A Vieira Braga,[...]. Science 2019
118
22

Macrophages: versatile players in renal inflammation and fibrosis.
Patrick Ming-Kuen Tang, David J Nikolic-Paterson, Hui-Yao Lan. Nat Rev Nephrol 2019
224
22

Single-cell RNA sequencing of human kidney.
Jinling Liao, Zhenyuan Yu, Yang Chen, Mengying Bao, Chunlin Zou, Haiying Zhang, Deyun Liu, Tianyu Li, Qingyun Zhang, Jiaping Li,[...]. Sci Data 2020
56
17

Single-Cell RNA Profiling of Glomerular Cells Shows Dynamic Changes in Experimental Diabetic Kidney Disease.
Jia Fu, Kemal M Akat, Zeguo Sun, Weijia Zhang, Detlef Schlondorff, Zhihong Liu, Thomas Tuschl, Kyung Lee, John Cijiang He. J Am Soc Nephrol 2019
57
17

The immune cell landscape in kidneys of patients with lupus nephritis.
Arnon Arazi, Deepak A Rao, Celine C Berthier, Anne Davidson, Yanyan Liu, Paul J Hoover, Adam Chicoine, Thomas M Eisenhaure, A Helena Jonsson, Shuqiang Li,[...]. Nat Immunol 2019
223
17

Distinct macrophage phenotypes contribute to kidney injury and repair.
Sik Lee, Sarah Huen, Hitoshi Nishio, Saori Nishio, Heung Kyu Lee, Bum-Soon Choi, Christiana Ruhrberg, Lloyd G Cantley. J Am Soc Nephrol 2011
546
17

Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
860
15

Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors.
Matthew D Young, Thomas J Mitchell, Felipe A Vieira Braga, Maxine G B Tran, Benjamin J Stewart, John R Ferdinand, Grace Collord, Rachel A Botting, Dorin-Mirel Popescu, Kevin W Loudon,[...]. Science 2018
245
15


Parabiosis and single-cell RNA sequencing reveal a limited contribution of monocytes to myofibroblasts in kidney fibrosis.
Rafael Kramann, Flavia Machado, Haojia Wu, Tetsuro Kusaba, Konrad Hoeft, Rebekka K Schneider, Benjamin D Humphreys. JCI Insight 2018
42
15

The Nuclear Receptor ESRRA Protects from Kidney Disease by Coupling Metabolism and Differentiation.
Poonam Dhillon, Jihwan Park, Carmen Hurtado Del Pozo, Lingzhi Li, Tomohito Doke, Shizheng Huang, Juanjuan Zhao, Hyun Mi Kang, Rojesh Shrestra, Michael S Balzer,[...]. Cell Metab 2021
30
20

Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney.
Andrew Ransick, Nils O Lindström, Jing Liu, Qin Zhu, Jin-Jin Guo, Gregory F Alvarado, Albert D Kim, Hannah G Black, Junhyong Kim, Andrew P McMahon. Dev Cell 2019
108
12

Transcriptomes of major renal collecting duct cell types in mouse identified by single-cell RNA-seq.
Lihe Chen, Jae Wook Lee, Chung-Lin Chou, Anil V Nair, Maria A Battistone, Teodor G Păunescu, Maria Merkulova, Sylvie Breton, Jill W Verlander, Susan M Wall,[...]. Proc Natl Acad Sci U S A 2017
127
12

A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys.
Blue B Lake, Song Chen, Masato Hoshi, Nongluk Plongthongkum, Diane Salamon, Amanda Knoten, Anitha Vijayan, Ramakrishna Venkatesh, Eric H Kim, Derek Gao,[...]. Nat Commun 2019
90
12

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
12

Immune cell landscaping reveals a protective role for regulatory T cells during kidney injury and fibrosis.
Fernanda do Valle Duraes, Armelle Lafont, Martin Beibel, Kea Martin, Katy Darribat, Rachel Cuttat, Annick Waldt, Ulrike Naumann, Grazyna Wieczorek, Swann Gaulis,[...]. JCI Insight 2020
26
19

Single-Cell Transcriptome Profiling of the Kidney Glomerulus Identifies Key Cell Types and Reactions to Injury.
Jun-Jae Chung, Leonard Goldstein, Ying-Jiun J Chen, Jiyeon Lee, Joshua D Webster, Merone Roose-Girma, Sharad C Paudyal, Zora Modrusan, Anwesha Dey, Andrey S Shaw. J Am Soc Nephrol 2020
34
14

mRNA-Seq whole-transcriptome analysis of a single cell.
Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B Tuch, Asim Siddiqui,[...]. Nat Methods 2009
12

Macrophage Wnt7b is critical for kidney repair and regeneration.
Shuei-Liong Lin, Bing Li, Sujata Rao, Eun-Jin Yeo, Thomas E Hudson, Brian T Nowlin, Huaying Pei, Lijun Chen, Jie J Zheng, Thomas J Carroll,[...]. Proc Natl Acad Sci U S A 2010
287
12

Dendritic cells and macrophages in the kidney: a spectrum of good and evil.
Natasha M Rogers, David A Ferenbach, Jeffrey S Isenberg, Angus W Thomson, Jeremy Hughes. Nat Rev Nephrol 2014
114
12

A lineage of myeloid cells independent of Myb and hematopoietic stem cells.
Christian Schulz, Elisa Gomez Perdiguero, Laurent Chorro, Heather Szabo-Rogers, Nicolas Cagnard, Katrin Kierdorf, Marco Prinz, Bishan Wu, Sten Eirik W Jacobsen, Jeffrey W Pollard,[...]. Science 2012
12

The Kidney Contains Ontogenetically Distinct Dendritic Cell and Macrophage Subtypes throughout Development That Differ in Their Inflammatory Properties.
Natallia Salei, Stephan Rambichler, Johanna Salvermoser, Nikos E Papaioannou, Ronja Schuchert, Dalia Pakalniškytė, Na Li, Julian A Marschner, Julia Lichtnekert, Christopher Stremmel,[...]. J Am Soc Nephrol 2020
31
16

Origin and function of myofibroblasts in kidney fibrosis.
Valerie S LeBleu, Gangadhar Taduri, Joyce O'Connell, Yingqi Teng, Vesselina G Cooke, Craig Woda, Hikaru Sugimoto, Raghu Kalluri. Nat Med 2013
780
12

Bone marrow Ly6Chigh monocytes are selectively recruited to injured kidney and differentiate into functionally distinct populations.
Shuei Liong Lin, Ana P Castaño, Brian T Nowlin, Mark L Lupher, Jeremy S Duffield. J Immunol 2009
245
12

Single-Cell Profiling of AKI in a Murine Model Reveals Novel Transcriptional Signatures, Profibrotic Phenotype, and Epithelial-to-Stromal Crosstalk.
Valeria Rudman-Melnick, Mike Adam, Andrew Potter, Saagar M Chokshi, Qing Ma, Keri A Drake, Meredith P Schuh, J Matthew Kofron, Prasad Devarajan, S Steven Potter. J Am Soc Nephrol 2020
32
15

Kidney dendritic cells: fundamental biology and functional roles in health and disease.
Christian Kurts, Florent Ginhoux, Ulf Panzer. Nat Rev Nephrol 2020
28
17

The Role of M2 Macrophages in the Progression of Chronic Kidney Disease following Acute Kidney Injury.
Myung-Gyu Kim, Sun Chul Kim, Yoon Sook Ko, Hee Young Lee, Sang-Kyung Jo, Wonyong Cho. PLoS One 2015
79
12

A Single-Cell Transcriptome Atlas of the Mouse Glomerulus.
Nikos Karaiskos, Mahdieh Rahmatollahi, Anastasiya Boltengagen, Haiyue Liu, Martin Hoehne, Markus Rinschen, Bernhard Schermer, Thomas Benzing, Nikolaus Rajewsky, Christine Kocks,[...]. J Am Soc Nephrol 2018
78
10

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
10

Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways.
Evan Der, Hemant Suryawanshi, Pavel Morozov, Manjunath Kustagi, Beatrice Goilav, Saritha Ranabothu, Peter Izmirly, Robert Clancy, H Michael Belmont, Mordecai Koenigsberg,[...]. Nat Immunol 2019
142
10

Smart-seq2 for sensitive full-length transcriptome profiling in single cells.
Simone Picelli, Åsa K Björklund, Omid R Faridani, Sven Sagasser, Gösta Winberg, Rickard Sandberg. Nat Methods 2013
10

Joint profiling of chromatin accessibility and gene expression in thousands of single cells.
Junyue Cao, Darren A Cusanovich, Vijay Ramani, Delasa Aghamirzaie, Hannah A Pliner, Andrew J Hill, Riza M Daza, Jose L McFaline-Figueroa, Jonathan S Packer, Lena Christiansen,[...]. Science 2018
292
10

Single cell RNA sequencing to dissect the molecular heterogeneity in lupus nephritis.
Evan Der, Saritha Ranabothu, Hemant Suryawanshi, Kemal M Akat, Robert Clancy, Pavel Morozov, Manjunath Kustagi, Mareike Czuppa, Peter Izmirly, H Michael Belmont,[...]. JCI Insight 2017
105
10

Differential Ly-6C expression identifies the recruited macrophage phenotype, which orchestrates the regression of murine liver fibrosis.
Prakash Ramachandran, Antonella Pellicoro, Madeleine A Vernon, Luke Boulter, Rebecca L Aucott, Aysha Ali, Stephen N Hartland, Victoria K Snowdon, Andrea Cappon, Timothy T Gordon-Walker,[...]. Proc Natl Acad Sci U S A 2012
550
10

Resident renal mononuclear phagocytes comprise five discrete populations with distinct phenotypes and functions.
Takahisa Kawakami, Julia Lichtnekert, Lucas J Thompson, Prasanthi Karna, Hicham Bouabe, Tobias M Hohl, Jay W Heinecke, Steven F Ziegler, Peter J Nelson, Jeremy S Duffield. J Immunol 2013
87
10

Macrophage-to-Myofibroblast Transition Contributes to Interstitial Fibrosis in Chronic Renal Allograft Injury.
Ying-Ying Wang, Hong Jiang, Jun Pan, Xiao-Ru Huang, Yu-Cheng Wang, Hong-Feng Huang, Ka-Fai To, David J Nikolic-Paterson, Hui-Yao Lan, Jiang-Hua Chen. J Am Soc Nephrol 2017
130
10

The chemokine receptors CCR2 and CX3CR1 mediate monocyte/macrophage trafficking in kidney ischemia-reperfusion injury.
Li Li, Liping Huang, Sun-Sang J Sung, Amy L Vergis, Diane L Rosin, C Edward Rose, Peter I Lobo, Mark D Okusa. Kidney Int 2008
240
10

Macrophage/monocyte depletion by clodronate, but not diphtheria toxin, improves renal ischemia/reperfusion injury in mice.
David A Ferenbach, Tara A Sheldrake, Kevin Dhaliwal, Tiina M J Kipari, Lorna P Marson, David C Kluth, Jeremy Hughes. Kidney Int 2012
110
10

Resident macrophages reprogram toward a developmental state after acute kidney injury.
Jeremie M Lever, Travis D Hull, Ravindra Boddu, Mark E Pepin, Laurence M Black, Oreoluwa O Adedoyin, Zhengqin Yang, Amie M Traylor, Yanlin Jiang, Zhang Li,[...]. JCI Insight 2019
38
10

CSF-1 signaling mediates recovery from acute kidney injury.
Ming-Zhi Zhang, Bing Yao, Shilin Yang, Li Jiang, Suwan Wang, Xiaofeng Fan, Huiyong Yin, Karlton Wong, Tomoki Miyazawa, Jianchun Chen,[...]. J Clin Invest 2012
213
10

M2 macrophages in kidney disease: biology, therapies, and perspectives.
Titi Chen, Qi Cao, Yiping Wang, David C H Harris. Kidney Int 2019
51
10

The orchestrated cellular and molecular responses of the kidney to endotoxin define a precise sepsis timeline.
Danielle Janosevic, Jered Myslinski, Thomas W McCarthy, Amy Zollman, Farooq Syed, Xiaoling Xuei, Hongyu Gao, Yun-Long Liu, Kimberly S Collins, Ying-Hua Cheng,[...]. Elife 2021
18
22

Single cell transcriptomics of mouse kidney transplants reveals a myeloid cell pathway for transplant rejection.
Anil Dangi, Naveen R Natesh, Irma Husain, Zhicheng Ji, Laura Barisoni, Jean Kwun, Xiling Shen, Edward B Thorp, Xunrong Luo. JCI Insight 2020
13
30


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.