A citation-based method for searching scientific literature

Wen Li, Parmit K Singh, Gregory A Sowd, Gregory J Bedwell, Sooin Jang, Vasudevan Achuthan, Amarachi V Oleru, Doris Wong, Hind J Fadel, KyeongEun Lee, Vineet N KewalRamani, Eric M Poeschla, Alon Herschhorn, Alan N Engelman. mBio 2020
Times Cited: 11







List of co-cited articles
295 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


HIV-1 uncoats in the nucleus near sites of integration.
Ryan C Burdick, Chenglei Li, MohamedHusen Munshi, Jonathan M O Rawson, Kunio Nagashima, Wei-Shau Hu, Vinay K Pathak. Proc Natl Acad Sci U S A 2020
82
90

Capsid-CPSF6 Interaction Licenses Nuclear HIV-1 Trafficking to Sites of Viral DNA Integration.
Vasudevan Achuthan, Jill M Perreira, Gregory A Sowd, Maritza Puray-Chavez, William M McDougall, Adriana Paulucci-Holthauzen, Xiaolin Wu, Hind J Fadel, Eric M Poeschla, Asha S Multani,[...]. Cell Host Microbe 2018
78
90

HIV-1 replication complexes accumulate in nuclear speckles and integrate into speckle-associated genomic domains.
Ashwanth C Francis, Mariana Marin, Parmit K Singh, Vasudevan Achuthan, Mathew J Prellberg, Kristina Palermino-Rowland, Shuiyun Lan, Philip R Tedbury, Stefan G Sarafianos, Alan N Engelman,[...]. Nat Commun 2020
34
90

Host cofactors and pharmacologic ligands share an essential interface in HIV-1 capsid that is lost upon disassembly.
Amanda J Price, David A Jacques, William A McEwan, Adam J Fletcher, Sebastian Essig, Jason W Chin, Upul D Halambage, Christopher Aiken, Leo C James. PLoS Pathog 2014
157
81

Transportin-1 binds to the HIV-1 capsid via a nuclear localization signal and triggers uncoating.
Juliette Fernandez, Anthony K Machado, Sébastien Lyonnais, Célia Chamontin, Kathleen Gärtner, Thibaut Léger, Corinne Henriquet, Camille Garcia, Débora M Portilho, Martine Pugnière,[...]. Nat Microbiol 2019
42
72

HIV-1 nuclear import in macrophages is regulated by CPSF6-capsid interactions at the nuclear pore complex.
David Alejandro Bejarano, Ke Peng, Vibor Laketa, Kathleen Börner, K Laurence Jost, Bojana Lucic, Bärbel Glass, Marina Lusic, Barbara Müller, Hans-Georg Kräusslich. Elife 2019
77
72

Nuclear Import of the HIV-1 Core Precedes Reverse Transcription and Uncoating.
Anastasia Selyutina, Mirjana Persaud, Kyeongeun Lee, Vineet KewalRamani, Felipe Diaz-Griffero. Cell Rep 2020
32
72

CPSF6 defines a conserved capsid interface that modulates HIV-1 replication.
Amanda J Price, Adam J Fletcher, Torsten Schaller, Tom Elliott, KyeongEun Lee, Vineet N KewalRamani, Jason W Chin, Greg J Towers, Leo C James. PLoS Pathog 2012
163
72

Direct Visualization of HIV-1 Replication Intermediates Shows that Capsid and CPSF6 Modulate HIV-1 Intra-nuclear Invasion and Integration.
Christopher R Chin, Jill M Perreira, George Savidis, Jocelyn M Portmann, Aaron M Aker, Eric M Feeley, Miles C Smith, Abraham L Brass. Cell Rep 2015
92
72


Structural basis of HIV-1 capsid recognition by PF74 and CPSF6.
Akash Bhattacharya, Steven L Alam, Thomas Fricke, Kaneil Zadrozny, Jaroslaw Sedzicki, Alexander B Taylor, Borries Demeler, Owen Pornillos, Barbie K Ganser-Pornillos, Felipe Diaz-Griffero,[...]. Proc Natl Acad Sci U S A 2014
140
72

HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency.
Torsten Schaller, Karen E Ocwieja, Jane Rasaiyaah, Amanda J Price, Troy L Brady, Shoshannah L Roth, Stéphane Hué, Adam J Fletcher, KyeongEun Lee, Vineet N KewalRamani,[...]. PLoS Pathog 2011
316
72


Reconstitution and visualization of HIV-1 capsid-dependent replication and integration in vitro.
Devin E Christensen, Barbie K Ganser-Pornillos, Jarrod S Johnson, Owen Pornillos, Wesley I Sundquist. Science 2020
33
72

A critical role for alternative polyadenylation factor CPSF6 in targeting HIV-1 integration to transcriptionally active chromatin.
Gregory A Sowd, Erik Serrao, Hao Wang, Weifeng Wang, Hind J Fadel, Eric M Poeschla, Alan N Engelman. Proc Natl Acad Sci U S A 2016
125
63

HIV-1 capsid: the multifaceted key player in HIV-1 infection.
Edward M Campbell, Thomas J Hope. Nat Rev Microbiol 2015
215
63

The structure and flexibility of conical HIV-1 capsids determined within intact virions.
Simone Mattei, Bärbel Glass, Wim J H Hagen, Hans-Georg Kräusslich, John A G Briggs. Science 2016
118
63

Assembly and analysis of conical models for the HIV-1 core.
B K Ganser, S Li, V Y Klishko, J T Finch, W I Sundquist. Science 1999
456
63

Atomic-level modelling of the HIV capsid.
Owen Pornillos, Barbie K Ganser-Pornillos, Mark Yeager. Nature 2011
251
63

Flexible use of nuclear import pathways by HIV-1.
KyeongEun Lee, Zandrea Ambrose, Thomas D Martin, Ilker Oztop, Alok Mulky, John G Julias, Nick Vandegraaff, Joerg G Baumann, Rui Wang, Wendy Yuen,[...]. Cell Host Microbe 2010
302
63

Nuclear pore blockade reveals that HIV-1 completes reverse transcription and uncoating in the nucleus.
Adarsh Dharan, Niklas Bachmann, Sarah Talley, Virginia Zwikelmaier, Edward M Campbell. Nat Microbiol 2020
63
63

Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Gongpu Zhao, Juan R Perilla, Ernest L Yufenyuy, Xin Meng, Bo Chen, Jiying Ning, Jinwoo Ahn, Angela M Gronenborn, Klaus Schulten, Christopher Aiken,[...]. Nature 2013
443
63

Structural and mechanistic bases for a potent HIV-1 capsid inhibitor.
Stephanie M Bester, Guochao Wei, Haiyan Zhao, Daniel Adu-Ampratwum, Naseer Iqbal, Valentine V Courouble, Ashwanth C Francis, Arun S Annamalai, Parmit K Singh, Nikoloz Shkriabai,[...]. Science 2020
25
63

Crystal structure of human cyclophilin A bound to the amino-terminal domain of HIV-1 capsid.
T R Gamble, F F Vajdos, S Yoo, D K Worthylake, M Houseweart, W I Sundquist, C P Hill. Cell 1996
578
63

KIF5B and Nup358 Cooperatively Mediate the Nuclear Import of HIV-1 during Infection.
Adarsh Dharan, Sarah Talley, Abhishek Tripathi, João I Mamede, Matthias Majetschak, Thomas J Hope, Edward M Campbell. PLoS Pathog 2016
57
54

X-ray structures of the hexameric building block of the HIV capsid.
Owen Pornillos, Barbie K Ganser-Pornillos, Brian N Kelly, Yuanzi Hua, Frank G Whitby, C David Stout, Wesley I Sundquist, Christopher P Hill, Mark Yeager. Cell 2009
357
54

Nuclear pore heterogeneity influences HIV-1 infection and the antiviral activity of MX2.
Melissa Kane, Stephanie V Rebensburg, Matthew A Takata, Trinity M Zang, Masahiro Yamashita, Mamuka Kvaratskhelia, Paul D Bieniasz. Elife 2018
50
54

Nup153 Unlocks the Nuclear Pore Complex for HIV-1 Nuclear Translocation in Nondividing Cells.
Cindy Buffone, Alicia Martinez-Lopez, Thomas Fricke, Silvana Opp, Marco Severgnini, Ingrid Cifola, Luca Petiti, Stella Frabetti, Katarzyna Skorupka, Kaneil K Zadrozny,[...]. J Virol 2018
37
54

Human nucleoporins promote HIV-1 docking at the nuclear pore, nuclear import and integration.
Francesca Di Nunzio, Anne Danckaert, Thomas Fricke, Patricio Perez, Juliette Fernandez, Emmanuelle Perret, Pascal Roux, Spencer Shorte, Pierre Charneau, Felipe Diaz-Griffero,[...]. PLoS One 2012
109
54

Transportin 3 promotes a nuclear maturation step required for efficient HIV-1 integration.
Lihong Zhou, Elena Sokolskaja, Clare Jolly, William James, Sally A Cowley, Ariberto Fassati. PLoS Pathog 2011
100
54

Nup153 and Nup98 bind the HIV-1 core and contribute to the early steps of HIV-1 replication.
Francesca Di Nunzio, Thomas Fricke, Annarita Miccio, Jose Carlos Valle-Casuso, Patricio Perez, Philippe Souque, Ermanno Rizzi, Marco Severgnini, Fulvio Mavilio, Pierre Charneau,[...]. Virology 2013
99
54

HIV-1 capsids bind and exploit the kinesin-1 adaptor FEZ1 for inward movement to the nucleus.
Viacheslav Malikov, Eveline Santos da Silva, Vladimir Jovasevic, Geoffrey Bennett, Daniel A de Souza Aranha Vieira, Bianca Schulte, Felipe Diaz-Griffero, Derek Walsh, Mojgan H Naghavi. Nat Commun 2015
117
54

Bicaudal D2 facilitates the cytoplasmic trafficking and nuclear import of HIV-1 genomes during infection.
Adarsh Dharan, Silvana Opp, Omar Abdel-Rahim, Sevnur Komurlu Keceli, Sabrina Imam, Felipe Diaz-Griffero, Edward M Campbell. Proc Natl Acad Sci U S A 2017
47
54

Complementary assays reveal a relationship between HIV-1 uncoating and reverse transcription.
Amy E Hulme, Omar Perez, Thomas J Hope. Proc Natl Acad Sci U S A 2011
176
54

HIV-1 capsid undergoes coupled binding and isomerization by the nuclear pore protein NUP358.
Katsiaryna Bichel, Amanda J Price, Torsten Schaller, Greg J Towers, Stefan M V Freund, Leo C James. Retrovirology 2013
68
54

Cone-shaped HIV-1 capsids are transported through intact nuclear pores.
Vojtech Zila, Erica Margiotta, Beata Turoňová, Thorsten G Müller, Christian E Zimmerli, Simone Mattei, Matteo Allegretti, Kathleen Börner, Jona Rada, Barbara Müller,[...]. Cell 2021
38
54

HIV-1 cores retain their integrity until minutes before uncoating in the nucleus.
Chenglei Li, Ryan C Burdick, Kunio Nagashima, Wei-Shau Hu, Vinay K Pathak. Proc Natl Acad Sci U S A 2021
20
54

HIV-1 integration in the human genome favors active genes and local hotspots.
Astrid R W Schröder, Paul Shinn, Huaming Chen, Charles Berry, Joseph R Ecker, Frederic Bushman. Cell 2002
45

HIV integration targeting: a pathway involving Transportin-3 and the nuclear pore protein RanBP2.
Karen E Ocwieja, Troy L Brady, Keshet Ronen, Alyssa Huegel, Shoshannah L Roth, Torsten Schaller, Leo C James, Greg J Towers, John A T Young, Sumit K Chanda,[...]. PLoS Pathog 2011
164
45



Remodeling of the Core Leads HIV-1 Preintegration Complex into the Nucleus of Human Lymphocytes.
Guillermo Blanco-Rodriguez, Anastasia Gazi, Blandine Monel, Stella Frabetti, Viviana Scoca, Florian Mueller, Olivier Schwartz, Jacomine Krijnse-Locker, Pierre Charneau, Francesca Di Nunzio. J Virol 2020
31
45

Capsid-Dependent Host Factors in HIV-1 Infection.
Masahiro Yamashita, Alan N Engelman. Trends Microbiol 2017
61
45

Intrinsic curvature of the HIV-1 CA hexamer underlies capsid topology and interaction with cyclophilin A.
Tao Ni, Samuel Gerard, Gongpu Zhao, Kyle Dent, Jiying Ning, Jing Zhou, Jiong Shi, Jordan Anderson-Daniels, Wen Li, Sooin Jang,[...]. Nat Struct Mol Biol 2020
19
45

Specific incorporation of cyclophilin A into HIV-1 virions.
E K Franke, H E Yuan, J Luban. Nature 1994
613
45

Structural organization of authentic, mature HIV-1 virions and cores.
John A G Briggs, Thomas Wilk, Reinhold Welker, Hans-Georg Kräusslich, Stephen D Fuller. EMBO J 2003
322
45

Capsid-CPSF6 Interaction Is Dispensable for HIV-1 Replication in Primary Cells but Is Selected during Virus Passage In Vivo.
Akatsuki Saito, Matthew S Henning, Erik Serrao, Brittany N Dubose, Samantha Teng, Jing Huang, Xiangming Li, Namiko Saito, Saumendra Prasad Roy, Mohammad Adnan Siddiqui,[...]. J Virol 2016
38
45

Analysis of CA Content and CPSF6 Dependence of Early HIV-1 Replication Complexes in SupT1-R5 Cells.
Vojtech Zila, Thorsten G Müller, Vibor Laketa, Barbara Müller, Hans-Georg Kräusslich. mBio 2019
20
45

TNPO3 protects HIV-1 replication from CPSF6-mediated capsid stabilization in the host cell cytoplasm.
Alberto De Iaco, Federico Santoni, Anne Vannier, Michel Guipponi, Stylianos Antonarakis, Jeremy Luban. Retrovirology 2013
105
45

Identification of host proteins required for HIV infection through a functional genomic screen.
Abraham L Brass, Derek M Dykxhoorn, Yair Benita, Nan Yan, Alan Engelman, Ramnik J Xavier, Judy Lieberman, Stephen J Elledge. Science 2008
45


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.