A citation-based method for searching scientific literature

Yang Zeng, Ren Ren, Gundeep Kaur, Swanand Hardikar, Zhengzhou Ying, Lance Babcock, Esha Gupta, Xing Zhang, Taiping Chen, Xiaodong Cheng. Genes Dev 2020
Times Cited: 7







List of co-cited articles
138 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Structure of nucleosome-bound DNA methyltransferases DNMT3A and DNMT3B.
Ting-Hai Xu, Minmin Liu, X Edward Zhou, Gangning Liang, Gongpu Zhao, H Eric Xu, Karsten Melcher, Peter A Jones. Nature 2020
17
57


Many paths to methyltransfer: a chronicle of convergence.
Heidi L Schubert, Robert M Blumenthal, Xiaodong Cheng. Trends Biochem Sci 2003
568
42

Structural basis for recognition of histone H3K36me3 nucleosome by human de novo DNA methyltransferases 3A and 3B.
Grégoire Rondelet, Thomas Dal Maso, Luc Willems, Johan Wouters. J Struct Biol 2016
64
42

Targets and genomic constraints of ectopic Dnmt3b expression.
Yingying Zhang, Jocelyn Charlton, Rahul Karnik, Isabel Beerman, Zachary D Smith, Hongcang Gu, Patrick Boyle, Xiaoli Mi, Kendell Clement, Ramona Pop,[...]. Elife 2018
17
42


The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape.
Daniel N Weinberg, Simon Papillon-Cavanagh, Haifen Chen, Yuan Yue, Xiao Chen, Kartik N Rajagopalan, Cynthia Horth, John T McGuire, Xinjing Xu, Hamid Nikbakht,[...]. Nature 2019
123
42

Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation.
Tuncay Baubec, Daniele F Colombo, Christiane Wirbelauer, Juliane Schmidt, Lukas Burger, Arnaud R Krebs, Altuna Akalin, Dirk Schübeler. Nature 2015
344
42

Optimization of High-Throughput Methyltransferase Assays for the Discovery of Small Molecule Inhibitors.
Guangping Dong, Adam Yasgar, Darrell L Peterson, Alexey Zakharov, Daniel Talley, Ken Chih-Chien Cheng, Ajit Jadhav, Anton Simeonov, Rong Huang. ACS Comb Sci 2020
4
50

The U6 snRNA m6A Methyltransferase METTL16 Regulates SAM Synthetase Intron Retention.
Kathryn E Pendleton, Beibei Chen, Kuanqing Liu, Olga V Hunter, Yang Xie, Benjamin P Tu, Nicholas K Conrad. Cell 2017
349
28

Widespread occurrence of N6-methyladenosine in bacterial mRNA.
Xin Deng, Kai Chen, Guan-Zheng Luo, Xiaocheng Weng, Quanjiang Ji, Tianhong Zhou, Chuan He. Nucleic Acids Res 2015
96
28

Structural basis for the target specificity of actin histidine methyltransferase SETD3.
Shaobo Dai, John R Horton, Clayton B Woodcock, Alex W Wilkinson, Xing Zhang, Or Gozani, Xiaodong Cheng. Nat Commun 2019
13
28


The bacterial epigenome.
María A Sánchez-Romero, Josep Casadesús. Nat Rev Microbiol 2020
46
28


An engineered variant of SETD3 methyltransferase alters target specificity from histidine to lysine methylation.
Shaobo Dai, John R Horton, Alex W Wilkinson, Or Gozani, Xing Zhang, Xiaodong Cheng. J Biol Chem 2020
10
28

Characterization of SETD3 methyltransferase-mediated protein methionine methylation.
Shaobo Dai, Matthew V Holt, John R Horton, Clayton B Woodcock, Anamika Patel, Xing Zhang, Nicolas L Young, Alex W Wilkinson, Xiaodong Cheng. J Biol Chem 2020
6
33


The diverse roles of DNA methylation in mammalian development and disease.
Maxim V C Greenberg, Deborah Bourc'his. Nat Rev Mol Cell Biol 2019
420
28

Frequent switching of Polycomb repressive marks and DNA hypermethylation in the PC3 prostate cancer cell line.
Einav Nili Gal-Yam, Gerda Egger, Leo Iniguez, Heather Holster, Steingrímur Einarsson, Xinmin Zhang, Joy C Lin, Gangning Liang, Peter A Jones, Amos Tanay. Proc Natl Acad Sci U S A 2008
258
28

Dynamic changes in histone modifications precede de novo DNA methylation in oocytes.
Kathleen R Stewart, Lenka Veselovska, Jeesun Kim, Jiahao Huang, Heba Saadeh, Shin-ichi Tomizawa, Sébastien A Smallwood, Taiping Chen, Gavin Kelsey. Genes Dev 2015
104
28

Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer.
Yeshayahu Schlesinger, Ravid Straussman, Ilana Keshet, Shlomit Farkash, Merav Hecht, Joseph Zimmerman, Eran Eden, Zohar Yakhini, Etti Ben-Shushan, Benjamin E Reubinoff,[...]. Nat Genet 2007
833
28

Leukemic IDH1 and IDH2 mutations result in a hypermethylation phenotype, disrupt TET2 function, and impair hematopoietic differentiation.
Maria E Figueroa, Omar Abdel-Wahab, Chao Lu, Patrick S Ward, Jay Patel, Alan Shih, Yushan Li, Neha Bhagwat, Aparna Vasanthakumar, Hugo F Fernandez,[...]. Cancer Cell 2010
28

DNMT3B isoforms without catalytic activity stimulate gene body methylation as accessory proteins in somatic cells.
Christopher E Duymich, Jessica Charlet, Xiaojing Yang, Peter A Jones, Gangning Liang. Nat Commun 2016
61
28

Role of the DNA methyltransferase variant DNMT3b3 in DNA methylation.
Daniel J Weisenberger, Mihaela Velicescu, Jonathan C Cheng, Felicidad A Gonzales, Gangning Liang, Peter A Jones. Mol Cancer Res 2004
131
28

De novo DNA methylation: a germ cell perspective.
Sébastien A Smallwood, Gavin Kelsey. Trends Genet 2012
229
28

Structural insight into autoinhibition and histone H3-induced activation of DNMT3A.
Xue Guo, Ling Wang, Jie Li, Zhanyu Ding, Jianxiong Xiao, Xiaotong Yin, Shuang He, Pan Shi, Liping Dong, Guohong Li,[...]. Nature 2015
180
28

Dnmt3L and the establishment of maternal genomic imprints.
D Bourc'his, G L Xu, C S Lin, B Bollman, T H Bestor. Science 2001
911
28

Intragenic DNA methylation prevents spurious transcription initiation.
Francesco Neri, Stefania Rapelli, Anna Krepelova, Danny Incarnato, Caterina Parlato, Giulia Basile, Mara Maldotti, Francesca Anselmi, Salvatore Oliviero. Nature 2017
284
28


The N-terminus of histone H3 is required for de novo DNA methylation in chromatin.
Jia-Lei Hu, Bo O Zhou, Run-Rui Zhang, Kang-Ling Zhang, Jin-Qiu Zhou, Guo-Liang Xu. Proc Natl Acad Sci U S A 2009
78
28

Reversible Regulation of Promoter and Enhancer Histone Landscape by DNA Methylation in Mouse Embryonic Stem Cells.
Andrew D King, Kevin Huang, Liudmilla Rubbi, Shuo Liu, Cun-Yu Wang, Yinsheng Wang, Matteo Pellegrini, Guoping Fan. Cell Rep 2016
64
28

A DNMT3A PWWP mutation leads to methylation of bivalent chromatin and growth retardation in mice.
Gintarė Sendžikaitė, Courtney W Hanna, Kathleen R Stewart-Morgan, Elena Ivanova, Gavin Kelsey. Nat Commun 2019
36
28

The defining DNA methylation signature of Kabuki syndrome enables functional assessment of genetic variants of unknown clinical significance.
Erfan Aref-Eshghi, Laila C Schenkel, Hanxin Lin, Cindy Skinner, Peter Ainsworth, Guillaume Paré, David Rodenhiser, Charles Schwartz, Bekim Sadikovic. Epigenetics 2017
35
28

Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains.
Benjamin P Berman, Daniel J Weisenberger, Joseph F Aman, Toshinori Hinoue, Zachary Ramjan, Yaping Liu, Houtan Noushmehr, Christopher P E Lange, Cornelis M van Dijk, Rob A E M Tollenaar,[...]. Nat Genet 2011
417
28


Patients with a Kabuki syndrome phenotype demonstrate DNA methylation abnormalities.
Nara Sobreira, Martha Brucato, Li Zhang, Christine Ladd-Acosta, Chrissie Ongaco, Jane Romm, Kimberly F Doheny, Regina C Mingroni-Netto, Debora Bertola, Chong A Kim,[...]. Eur J Hum Genet 2017
29
28

Multivalent histone engagement by the linked tandem Tudor and PHD domains of UHRF1 is required for the epigenetic inheritance of DNA methylation.
Scott B Rothbart, Bradley M Dickson, Michelle S Ong, Krzysztof Krajewski, Scott Houliston, Dmitri B Kireev, Cheryl H Arrowsmith, Brian D Strahl. Genes Dev 2013
109
28

Histone H3K36 mutations promote sarcomagenesis through altered histone methylation landscape.
Chao Lu, Siddhant U Jain, Dominik Hoelper, Denise Bechet, Rosalynn C Molden, Leili Ran, Devan Murphy, Sriram Venneti, Meera Hameed, Bruce R Pawel,[...]. Science 2016
198
28

Mutations in EZH2 cause Weaver syndrome.
William T Gibson, Rebecca L Hood, Shing Hei Zhan, Dennis E Bulman, Anthony P Fejes, Richard Moore, Andrew J Mungall, Patrice Eydoux, Riyana Babul-Hirji, Jianghong An,[...]. Am J Hum Genet 2012
158
28

DNA Methylation Signature for EZH2 Functionally Classifies Sequence Variants in Three PRC2 Complex Genes.
Sanaa Choufani, William T Gibson, Andrei L Turinsky, Brian H Y Chung, Tianren Wang, Kopal Garg, Alessandro Vitriolo, Ana S A Cohen, Sharri Cyrus, Sarah Goodman,[...]. Am J Hum Genet 2020
21
28

Depletion of H3K36me2 recapitulates epigenomic and phenotypic changes induced by the H3.3K36M oncohistone mutation.
Kartik N Rajagopalan, Xiao Chen, Daniel N Weinberg, Haifen Chen, Jacek Majewski, C David Allis, Chao Lu. Proc Natl Acad Sci U S A 2021
6
33

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk.
Arie B Brinkman, Hongcang Gu, Stefanie J J Bartels, Yingying Zhang, Filomena Matarese, Femke Simmer, Hendrik Marks, Christoph Bock, Andreas Gnirke, Alexander Meissner,[...]. Genome Res 2012
239
28

Short sequences can efficiently recruit histone H3 lysine 27 trimethylation in the absence of enhancer activity and DNA methylation.
Philip Jermann, Leslie Hoerner, Lukas Burger, Dirk Schübeler. Proc Natl Acad Sci U S A 2014
86
28

The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation.
Arunkumar Dhayalan, Arumugam Rajavelu, Philipp Rathert, Raluca Tamas, Renata Z Jurkowska, Sergey Ragozin, Albert Jeltsch. J Biol Chem 2010
317
28

The H3K36me2 Methyltransferase Nsd1 Demarcates PRC2-Mediated H3K27me2 and H3K27me3 Domains in Embryonic Stem Cells.
Gundula Streubel, Ariane Watson, Sri Ganesh Jammula, Andrea Scelfo, Darren J Fitzpatrick, Giorgio Oliviero, Rachel McCole, Eric Conway, Eleanor Glancy, Gian Luca Negri,[...]. Mol Cell 2018
55
28

Gain-of-function DNMT3A mutations cause microcephalic dwarfism and hypermethylation of Polycomb-regulated regions.
Patricia Heyn, Clare V Logan, Adeline Fluteau, Rachel C Challis, Tatsiana Auchynnikava, Carol-Anne Martin, Joseph A Marsh, Francesca Taglini, Fiona Kilanowski, David A Parry,[...]. Nat Genet 2019
50
28

Hemi-methylated DNA regulates DNA methylation inheritance through allosteric activation of H3 ubiquitylation by UHRF1.
Joseph S Harrison, Evan M Cornett, Dennis Goldfarb, Paul A DaRosa, Zimeng M Li, Feng Yan, Bradley M Dickson, Angela H Guo, Daniel V Cantu, Lilia Kaustov,[...]. Elife 2016
71
28

Growth disrupting mutations in epigenetic regulatory molecules are associated with abnormalities of epigenetic aging.
Aaron R Jeffries, Reza Maroofian, Claire G Salter, Barry A Chioza, Harold E Cross, Michael A Patton, Emma Dempster, I Karen Temple, Deborah J G Mackay, Faisal I Rezwan,[...]. Genome Res 2019
16
28

H3K36 methylation antagonizes PRC2-mediated H3K27 methylation.
Wen Yuan, Mo Xu, Chang Huang, Nan Liu, She Chen, Bing Zhu. J Biol Chem 2011
309
28


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.