A citation-based method for searching scientific literature

Zhongxia Yi, Manu Sanjeev, Guramrit Singh. Trends Genet 2021
Times Cited: 10







List of co-cited articles
89 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Beyond quality control: The role of nonsense-mediated mRNA decay (NMD) in regulating gene expression.
Sofia Nasif, Lara Contu, Oliver Mühlemann. Semin Cell Dev Biol 2018
65
40

New insights into no-go, non-stop and nonsense-mediated mRNA decay complexes.
Kyle T Powers, Jenn-Yeu Alvin Szeto, Christiane Schaffitzel. Curr Opin Struct Biol 2020
12
30

Cytoplasmic RNA decay pathways - Enzymes and mechanisms.
Anna Łabno, Rafał Tomecki, Andrzej Dziembowski. Biochim Biophys Acta 2016
93
30

Regulation of cytoplasmic mRNA decay.
Daniel R Schoenberg, Lynne E Maquat. Nat Rev Genet 2012
423
30

Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise.
Joshua T Mendell, Neda A Sharifi, Jennifer L Meyers, Francisco Martinez-Murillo, Harry C Dietz. Nat Genet 2004
590
30

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
30

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
30

Disassembly of exon junction complexes by PYM.
Niels H Gehring, Styliani Lamprinaki, Andreas E Kulozik, Matthias W Hentze. Cell 2009
124
30

Upf1 senses 3'UTR length to potentiate mRNA decay.
J Robert Hogg, Stephen P Goff. Cell 2010
217
30

Phospho-dependent and phospho-independent interactions of the helicase UPF1 with the NMD factors SMG5-SMG7 and SMG6.
Sutapa Chakrabarti, Fabien Bonneau, Steffen Schüssler, Elfriede Eppinger, Elena Conti. Nucleic Acids Res 2014
59
30

The impact of nonsense-mediated mRNA decay on genetic disease, gene editing and cancer immunotherapy.
Rik G H Lindeboom, Michiel Vermeulen, Ben Lehner, Fran Supek. Nat Genet 2019
54
30

The structural basis for the interaction between the CAF1 nuclease and the NOT1 scaffold of the human CCR4-NOT deadenylase complex.
Alain-Pierre Petit, Lara Wohlbold, Praveen Bawankar, Eric Huntzinger, Steffen Schmidt, Elisa Izaurralde, Oliver Weichenrieder. Nucleic Acids Res 2012
85
20

Roquin represses autoimmunity by limiting inducible T-cell co-stimulator messenger RNA.
Di Yu, Andy Hee-Meng Tan, Xin Hu, Vicki Athanasopoulos, Nicholas Simpson, Diego G Silva, Andreas Hutloff, Keith M Giles, Peter J Leedman, Kong Peng Lam,[...]. Nature 2007
315
20

Reconstitution of recombinant human CCR4-NOT reveals molecular insights into regulated deadenylation.
Tobias Raisch, Chung-Te Chang, Yevgen Levdansky, Sowndarya Muthukumar, Stefan Raunser, Eugene Valkov. Nat Commun 2019
24
20

Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia.
Kim De Keersmaecker, Zeynep Kalender Atak, Ning Li, Carmen Vicente, Stephanie Patchett, Tiziana Girardi, Valentina Gianfelici, Ellen Geerdens, Emmanuelle Clappier, Michaël Porcu,[...]. Nat Genet 2013
266
20


Not1 mediates recruitment of the deadenylase Caf1 to mRNAs targeted for degradation by tristetraprolin.
Heike Sandler, Jochen Kreth, H Th Marc Timmers, Georg Stoecklin. Nucleic Acids Res 2011
149
20

ARE-binding protein ZFP36L1 interacts with CNOT1 to directly repress translation via a deadenylation-independent mechanism.
Hiroshi Otsuka, Akira Fukao, Takumi Tomohiro, Shungo Adachi, Toru Suzuki, Akinori Takahashi, Yoshinori Funakami, Toru Natsume, Tadashi Yamamoto, Kent E Duncan,[...]. Biochimie 2020
4
50

Coupling of V(D)J recombination to the cell cycle suppresses genomic instability and lymphoid tumorigenesis.
Li Zhang, Taylor L Reynolds, Xiaochuan Shan, Stephen Desiderio. Immunity 2011
61
20

Roquin Suppresses the PI3K-mTOR Signaling Pathway to Inhibit T Helper Cell Differentiation and Conversion of Treg to Tfr Cells.
Katharina Essig, Desheng Hu, Joao C Guimaraes, Dominik Alterauge, Stephanie Edelmann, Timsse Raj, Jan Kranich, Gesine Behrens, Alexander Heiseke, Stefan Floess,[...]. Immunity 2017
67
20

ZFP36L1 and ZFP36L2 control LDLR mRNA stability via the ERK-RSK pathway.
Shungo Adachi, Masae Homoto, Rikou Tanaka, Yusaku Hioki, Hiroshi Murakami, Hiroaki Suga, Masaki Matsumoto, Keiichi I Nakayama, Tomohisa Hatta, Shun-ichiro Iemura,[...]. Nucleic Acids Res 2014
45
20

Loss of β-cell identity and diabetic phenotype in mice caused by disruption of CNOT3-dependent mRNA deadenylation.
Dina Mostafa, Akiko Yanagiya, Eleni Georgiadou, Yibo Wu, Theodoros Stylianides, Guy A Rutter, Toru Suzuki, Tadashi Yamamoto. Commun Biol 2020
4
50

The role of m6A modification in physiology and disease.
Chuan Yang, Yiyang Hu, Bo Zhou, Yulu Bao, Zhibin Li, Chunli Gong, Huan Yang, Sumin Wang, Yufeng Xiao. Cell Death Dis 2020
20
20

Somatic inflammatory gene mutations in human ulcerative colitis epithelium.
Kosaku Nanki, Masayuki Fujii, Mariko Shimokawa, Mami Matano, Shingo Nishikori, Shoichi Date, Ai Takano, Kohta Toshimitsu, Yuki Ohta, Sirirat Takahashi,[...]. Nature 2020
65
20

PABP Cooperates with the CCR4-NOT Complex to Promote mRNA Deadenylation and Block Precocious Decay.
Hyerim Yi, Joha Park, Minju Ha, Jaechul Lim, Hyeshik Chang, V Narry Kim. Mol Cell 2018
71
20

A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation.
Jianzhao Liu, Yanan Yue, Dali Han, Xiao Wang, Ye Fu, Liang Zhang, Guifang Jia, Miao Yu, Zhike Lu, Xin Deng,[...]. Nat Chem Biol 2014
20

CNOT2 depletion disrupts and inhibits the CCR4-NOT deadenylase complex and induces apoptotic cell death.
Kentaro Ito, Takeshi Inoue, Kazumasa Yokoyama, Masahiro Morita, Toru Suzuki, Tadashi Yamamoto. Genes Cells 2011
52
20


Roquin promotes constitutive mRNA decay via a conserved class of stem-loop recognition motifs.
Kathrin Leppek, Johanna Schott, Sonja Reitter, Fabian Poetz, Ming C Hammond, Georg Stoecklin. Cell 2013
188
20

Conservation of the deadenylase activity of proteins of the Caf1 family in human.
Claire Bianchin, Fabienne Mauxion, Stéphanie Sentis, Bertrand Séraphin, Laura Corbo. RNA 2005
76
20

Trypanosome CNOT10 is essential for the integrity of the NOT deadenylase complex and for degradation of many mRNAs.
Valentin Färber, Esteban Erben, Sahil Sharma, Georg Stoecklin, Christine Clayton. Nucleic Acids Res 2013
22
20

A human immune dysregulation syndrome characterized by severe hyperinflammation with a homozygous nonsense Roquin-1 mutation.
S J Tavernier, V Athanasopoulos, P Verloo, G Behrens, J Staal, D J Bogaert, L Naesens, M De Bruyne, S Van Gassen, E Parthoens,[...]. Nat Commun 2019
14
20

Interferon-γ excess leads to pathogenic accumulation of follicular helper T cells and germinal centers.
Sau K Lee, Diego G Silva, Jaime L Martin, Alvin Pratama, Xin Hu, Pheh-Ping Chang, Giles Walters, Carola G Vinuesa. Immunity 2012
181
20

m6A mRNA methylation controls T cell homeostasis by targeting the IL-7/STAT5/SOCS pathways.
Hua-Bing Li, Jiyu Tong, Shu Zhu, Pedro J Batista, Erin E Duffy, Jun Zhao, Will Bailis, Guangchao Cao, Lina Kroehling, Yuanyuan Chen,[...]. Nature 2017
301
20

Frequent mutations that converge on the NFKBIZ pathway in ulcerative colitis.
Nobuyuki Kakiuchi, Kenichi Yoshida, Motoi Uchino, Takako Kihara, Kotaro Akaki, Yoshikage Inoue, Kenji Kawada, Satoshi Nagayama, Akira Yokoyama, Shuji Yamamoto,[...]. Nature 2020
58
20

The Ccr4-Not complex is a key regulator of eukaryotic gene expression.
Martine A Collart. Wiley Interdiscip Rev RNA 2016
123
20

Follicular helper T cells are required for systemic autoimmunity.
Michelle A Linterman, Robert J Rigby, Raphael K Wong, Di Yu, Robert Brink, Jennifer L Cannons, Pamela L Schwartzberg, Matthew C Cook, Giles D Walters, Carola G Vinuesa. J Exp Med 2009
434
20

A RING-type ubiquitin ligase family member required to repress follicular helper T cells and autoimmunity.
Carola G Vinuesa, Matthew C Cook, Constanza Angelucci, Vicki Athanasopoulos, Lixin Rui, Kim M Hill, Di Yu, Heather Domaschenz, Belinda Whittle, Teresa Lambe,[...]. Nature 2005
640
20

Concerted action of poly(A) nucleases and decapping enzyme in mammalian mRNA turnover.
Akio Yamashita, Tsung-Cheng Chang, Yukiko Yamashita, Wenmiao Zhu, Zhenping Zhong, Chyi-Ying A Chen, Ann-Bin Shyu. Nat Struct Mol Biol 2005
311
20

Interaction of CCR4-NOT with EBF1 regulates gene-specific transcription and mRNA stability in B lymphopoiesis.
Cheng-Yuan Yang, Senthilkumar Ramamoorthy, Sören Boller, Marc Rosenbaum, Alfonso Rodriguez Gil, Gerhard Mittler, Yumiko Imai, Keiji Kuba, Rudolf Grosschedl. Genes Dev 2016
17
20

Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development.
Sean C Bendall, Kara L Davis, El-Ad David Amir, Michelle D Tadmor, Erin F Simonds, Tiffany J Chen, Daniel K Shenfeld, Garry P Nolan, Dana Pe'er. Cell 2014
488
20

Deletion of the RNA-binding proteins ZFP36L1 and ZFP36L2 leads to perturbed thymic development and T lymphoblastic leukemia.
Daniel J Hodson, Michelle L Janas, Alison Galloway, Sarah E Bell, Simon Andrews, Cheuk M Li, Richard Pannell, Christian W Siebel, H Robson MacDonald, Kim De Keersmaecker,[...]. Nat Immunol 2010
125
20

Global quantification of mammalian gene expression control.
Björn Schwanhäusser, Dorothea Busse, Na Li, Gunnar Dittmar, Johannes Schuchhardt, Jana Wolf, Wei Chen, Matthias Selbach. Nature 2011
20




A pathogenetic role for TNF alpha in the syndrome of cachexia, arthritis, and autoimmunity resulting from tristetraprolin (TTP) deficiency.
G A Taylor, E Carballo, D M Lee, W S Lai, M J Thompson, D D Patel, D I Schenkman, G S Gilkeson, H E Broxmeyer, B F Haynes,[...]. Immunity 1996
613
20


Structural basis for the recruitment of the human CCR4-NOT deadenylase complex by tristetraprolin.
Marc R Fabian, Filipp Frank, Christopher Rouya, Nadeem Siddiqui, Wi S Lai, Alexey Karetnikov, Perry J Blackshear, Bhushan Nagar, Nahum Sonenberg. Nat Struct Mol Biol 2013
153
20

CNOT3 contributes to early B cell development by controlling Igh rearrangement and p53 mRNA stability.
Takeshi Inoue, Masahiro Morita, Atsushi Hijikata, Yoko Fukuda-Yuzawa, Shungo Adachi, Kyoichi Isono, Tomokatsu Ikawa, Hiroshi Kawamoto, Haruhiko Koseki, Tohru Natsume,[...]. J Exp Med 2015
35
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.