A citation-based method for searching scientific literature


List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity




A diploid assembly-based benchmark for variants in the major histocompatibility complex.
Chen-Shan Chin, Justin Wagner, Qiandong Zeng, Erik Garrison, Shilpa Garg, Arkarachai Fungtammasan, Mikko Rautiainen, Sergey Aganezov, Melanie Kirsche, Samantha Zarate,[...]. Nat Commun 2020
14
100

Structural variant calling: the long and the short of it.
Medhat Mahmoud, Nastassia Gobet, Diana Ivette Cruz-Dávalos, Ninon Mounier, Christophe Dessimoz, Fritz J Sedlazeck. Genome Biol 2019
78
100

Weighted minimizer sampling improves long read mapping.
Chirag Jain, Arang Rhie, Haowen Zhang, Claudia Chu, Brian P Walenz, Sergey Koren, Adam M Phillippy. Bioinformatics 2020
19
100

Megabase Length Hypermutation Accompanies Human Structural Variation at 17p11.2.
Christine R Beck, Claudia M B Carvalho, Zeynep C Akdemir, Fritz J Sedlazeck, Xiaofei Song, Qingchang Meng, Jianhong Hu, Harsha Doddapaneni, Zechen Chong, Edward S Chen,[...]. Cell 2019
30
100

Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment.
Yilei Fu, Medhat Mahmoud, Viginesh Vaibhav Muraliraman, Fritz J Sedlazeck, Todd J Treangen. Gigascience 2021
2
100

Adaptive seeds tame genomic sequence comparison.
Szymon M Kiełbasa, Raymond Wan, Kengo Sato, Paul Horton, Martin C Frith. Genome Res 2011
570
100


Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
Aaron M Wenger, Paul Peluso, William J Rowell, Pi-Chuan Chang, Richard J Hall, Gregory T Concepcion, Jana Ebler, Arkarachai Fungtammasan, Alexey Kolesnikov, Nathan D Olson,[...]. Nat Biotechnol 2019
269
100

Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato.
Michael Alonge, Xingang Wang, Matthias Benoit, Sebastian Soyk, Lara Pereira, Lei Zhang, Hamsini Suresh, Srividya Ramakrishnan, Florian Maumus, Danielle Ciren,[...]. Cell 2020
108
100

BulkVis: a graphical viewer for Oxford nanopore bulk FAST5 files.
Alexander Payne, Nadine Holmes, Vardhman Rakyan, Matthew Loose. Bioinformatics 2019
93
100

Copy number variation of the Lipoprotein(a) (LPA) gene is associated with coronary artery disease in a southern Han Chinese population.
Zhijun Wu, Haihui Sheng, Yanjia Chen, Jing Tang, Yan Liu, Qiujing Chen, Lin Lu, Wei Jin. Int J Clin Exp Med 2014
11
100


Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
100

Human housekeeping genes, revisited.
Eli Eisenberg, Erez Y Levanon. Trends Genet 2013
613
100


The evolutionary origin of orphan genes.
Diethard Tautz, Tomislav Domazet-Lošo. Nat Rev Genet 2011
376
100

rMETL: sensitive mobile element insertion detection with long read realignment.
Tao Jiang, Bo Liu, Junyi Li, Yadong Wang. Bioinformatics 2019
3
100

BamTools: a C++ API and toolkit for analyzing and managing BAM files.
Derek W Barnett, Erik K Garrison, Aaron R Quinlan, Michael P Strömberg, Gabor T Marth. Bioinformatics 2011
347
100

Complex rearrangements and oncogene amplifications revealed by long-read DNA and RNA sequencing of a breast cancer cell line.
Maria Nattestad, Sara Goodwin, Karen Ng, Timour Baslan, Fritz J Sedlazeck, Philipp Rescheneder, Tyler Garvin, Han Fang, James Gurtowski, Elizabeth Hutton,[...]. Genome Res 2018
51
100

Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.
Daniel C Jeffares, Clemency Jolly, Mimoza Hoti, Doug Speed, Liam Shaw, Charalampos Rallis, Francois Balloux, Christophe Dessimoz, Jürg Bähler, Fritz J Sedlazeck. Nat Commun 2017
134
100


Coming of age: ten years of next-generation sequencing technologies.
Sara Goodwin, John D McPherson, W Richard McCombie. Nat Rev Genet 2016
100

Indel detection from DNA and RNA sequencing data with transIndel.
Rendong Yang, Jamie L Van Etten, Scott M Dehm. BMC Genomics 2018
10
100

Extensive sequencing of seven human genomes to characterize benchmark reference materials.
Justin M Zook, David Catoe, Jennifer McDaniel, Lindsay Vang, Noah Spies, Arend Sidow, Ziming Weng, Yuling Liu, Christopher E Mason, Noah Alexander,[...]. Sci Data 2016
252
100

Teaser: Individualized benchmarking and optimization of read mapping results for NGS data.
Moritz Smolka, Philipp Rescheneder, Michael C Schatz, Arndt von Haeseler, Fritz J Sedlazeck. Genome Biol 2015
16
100

Identification of common molecular subsequences.
T F Smith, M S Waterman. J Mol Biol 1981
100



Accurate detection of complex structural variations using single-molecule sequencing.
Fritz J Sedlazeck, Philipp Rescheneder, Moritz Smolka, Han Fang, Maria Nattestad, Arndt von Haeseler, Michael C Schatz. Nat Methods 2018
390
100

BCFtools/csq: haplotype-aware variant consequences.
Petr Danecek, Shane A McCarthy. Bioinformatics 2017
83
100

A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases.
Chirag Jain, Alexander Dilthey, Sergey Koren, Srinivas Aluru, Adam M Phillippy. J Comput Biol 2018
17
100

Towards population-scale long-read sequencing.
Wouter De Coster, Matthias H Weissensteiner, Fritz J Sedlazeck. Nat Rev Genet 2021
7
100

lra: A long read aligner for sequences and contigs.
Jingwen Ren, Mark J P Chaisson. PLoS Comput Biol 2021
4
100

A robust benchmark for detection of germline large deletions and insertions.
Justin M Zook, Nancy F Hansen, Nathan D Olson, Lesley Chapman, James C Mullikin, Chunlin Xiao, Stephen Sherry, Sergey Koren, Adam M Phillippy, Paul C Boutros,[...]. Nat Biotechnol 2020
55
100

Piercing the dark matter: bioinformatics of long-range sequencing and mapping.
Fritz J Sedlazeck, Hayan Lee, Charlotte A Darby, Michael C Schatz. Nat Rev Genet 2018
172
100

NanoSim: nanopore sequence read simulator based on statistical characterization.
Chen Yang, Justin Chu, René L Warren, Inanç Birol. Gigascience 2017
53
100

Integrative genomics viewer.
James T Robinson, Helga Thorvaldsdóttir, Wendy Winckler, Mitchell Guttman, Eric S Lander, Gad Getz, Jill P Mesirov. Nat Biotechnol 2011
100

Fast and sensitive mapping of nanopore sequencing reads with GraphMap.
Ivan Sović, Mile Šikić, Andreas Wilm, Shannon Nicole Fenlon, Swaine Chen, Niranjan Nagarajan. Nat Commun 2016
156
100

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.