A citation-based method for searching scientific literature

Fredrika Åsenius, Tyler J Gorrie-Stone, Ama Brew, Yasmin Panchbhaya, Elizabeth Williamson, Leonard C Schalkwyk, Vardhman K Rakyan, Michelle L Holland, Sarah J Marzi, David J Williams. PLoS Genet 2020
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Distinct DNA methylation profiles in subtypes of orofacial cleft.
Gemma C Sharp, Karen Ho, Amy Davies, Evie Stergiakouli, Kerry Humphries, Wendy McArdle, Jonathan Sandy, George Davey Smith, Sarah J Lewis, Caroline L Relton. Clin Epigenetics 2017
43
50

Validation of the MethylationEPIC BeadChip for fresh-frozen and formalin-fixed paraffin-embedded tumours.
Teresia Kling, Anna Wenger, Stephan Beck, Helena Carén. Clin Epigenetics 2017
32
50

Ontology application and use at the ENCODE DCC.
Venkat S Malladi, Drew T Erickson, Nikhil R Podduturi, Laurence D Rowe, Esther T Chan, Jean M Davidson, Benjamin C Hitz, Marcus Ho, Brian T Lee, Stuart Miyasato,[...]. Database (Oxford) 2015
29
50

EWAS Data Hub: a resource of DNA methylation array data and metadata.
Zhuang Xiong, Mengwei Li, Fei Yang, Yingke Ma, Jian Sang, Rujiao Li, Zhaohua Li, Zhang Zhang, Yiming Bao. Nucleic Acids Res 2020
19
50

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays.
Martin J Aryee, Andrew E Jaffe, Hector Corrada-Bravo, Christine Ladd-Acosta, Andrew P Feinberg, Kasper D Hansen, Rafael A Irizarry. Bioinformatics 2014
50

Complex heatmaps reveal patterns and correlations in multidimensional genomic data.
Zuguang Gu, Roland Eils, Matthias Schlesner. Bioinformatics 2016
50


Charting a dynamic DNA methylation landscape of the human genome.
Michael J Ziller, Hongcang Gu, Fabian Müller, Julie Donaghey, Linus T-Y Tsai, Oliver Kohlbacher, Philip L De Jager, Evan D Rosen, David A Bennett, Bradley E Bernstein,[...]. Nature 2013
779
50


Epigenetic variability in cells of normal cytology is associated with the risk of future morphological transformation.
Andrew E Teschendorff, Allison Jones, Heidi Fiegl, Alexandra Sargent, Joanna J Zhuang, Henry C Kitchener, Martin Widschwendter. Genome Med 2012
110
50

CHARGE and Kabuki Syndromes: Gene-Specific DNA Methylation Signatures Identify Epigenetic Mechanisms Linking These Clinically Overlapping Conditions.
Darci T Butcher, Cheryl Cytrynbaum, Andrei L Turinsky, Michelle T Siu, Michal Inbar-Feigenberg, Roberto Mendoza-Londono, David Chitayat, Susan Walker, Jerry Machado, Oana Caluseriu,[...]. Am J Hum Genet 2017
83
50

Increased methylation variation in epigenetic domains across cancer types.
Kasper Daniel Hansen, Winston Timp, Héctor Corrada Bravo, Sarven Sabunciyan, Benjamin Langmead, Oliver G McDonald, Bo Wen, Hao Wu, Yun Liu, Dinh Diep,[...]. Nat Genet 2011
696
50

Recommendations for the design and analysis of epigenome-wide association studies.
Karin B Michels, Alexandra M Binder, Sarah Dedeurwaerder, Charles B Epstein, John M Greally, Ivo Gut, E Andres Houseman, Benedetta Izzi, Karl T Kelsey, Alexander Meissner,[...]. Nat Methods 2013
227
50

Expanding epigenomics to archived FFPE tissues: an evaluation of DNA repair methodologies.
Erin M Siegel, Anders E Berglund, Bridget M Riggs, Steven A Eschrich, Ryan M Putney, Abidemi O Ajidahun, Domenico Coppola, David Shibata. Cancer Epidemiol Biomarkers Prev 2014
17
50

DNA methylation arrays as surrogate measures of cell mixture distribution.
Eugene Andres Houseman, William P Accomando, Devin C Koestler, Brock C Christensen, Carmen J Marsit, Heather H Nelson, John K Wiencke, Karl T Kelsey. BMC Bioinformatics 2012
50


The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
50

Brain metastasis DNA methylomes, a novel resource for the identification of biological and clinical features.
Matthew P Salomon, Javier I J Orozco, James S Wilmott, Parvinder Hothi, Ayla O Manughian-Peter, Charles S Cobbs, Richard A Scolyer, Dave S B Hoon, Diego M Marzese. Sci Data 2018
10
50

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository.
Ron Edgar, Michael Domrachev, Alex E Lash. Nucleic Acids Res 2002
50

A methodological study of genome-wide DNA methylation analyses using matched archival formalin-fixed paraffin embedded and fresh frozen breast tumors.
Allyson C Espinal, Dan Wang, Li Yan, Song Liu, Li Tang, Qiang Hu, Carl D Morrison, Christine B Ambrosone, Michael J Higgins, Lara E Sucheston-Campbell. Oncotarget 2017
4
50

Genetic and epigenetic regulation of gene expression in fetal and adult human livers.
Marc Jan Bonder, Silva Kasela, Mart Kals, Riin Tamm, Kaie Lokk, Isabel Barragan, Wim A Buurman, Patrick Deelen, Jan-Willem Greve, Maxim Ivanov,[...]. BMC Genomics 2014
75
50

EWASdb: epigenome-wide association study database.
Di Liu, Linna Zhao, Zhaoyang Wang, Xu Zhou, Xiuzhao Fan, Yong Li, Jing Xu, Simeng Hu, Miaomiao Niu, Xiuling Song,[...]. Nucleic Acids Res 2019
17
50

Epigenetic Classifiers for Precision Diagnosis of Brain Tumors.
Javier Ij Orozco, Ayla O Manughian-Peter, Matthew P Salomon, Diego M Marzese. Epigenet Insights 2019
9
50

MetaSRA: normalized human sample-specific metadata for the Sequence Read Archive.
Matthew N Bernstein, AnHai Doan, Colin N Dewey. Bioinformatics 2017
32
50

EWAS Atlas: a curated knowledgebase of epigenome-wide association studies.
Mengwei Li, Dong Zou, Zhaohua Li, Ran Gao, Jian Sang, Yuansheng Zhang, Rujiao Li, Lin Xia, Tao Zhang, Guangyi Niu,[...]. Nucleic Acids Res 2019
61
50

Complex impact of DNA methylation on transcriptional dysregulation across 22 human cancer types.
Zishan Wang, Jiaqi Yin, Weiwei Zhou, Jing Bai, Yunjin Xie, Kang Xu, Xiangyi Zheng, Jun Xiao, Li Zhou, Xiaolin Qi,[...]. Nucleic Acids Res 2020
14
50

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.
Jordana T Bell, Athma A Pai, Joseph K Pickrell, Daniel J Gaffney, Roger Pique-Regi, Jacob F Degner, Yoav Gilad, Jonathan K Pritchard. Genome Biol 2011
579
50


Medulloblastoma subgroups remain stable across primary and metastatic compartments.
Xin Wang, Adrian M Dubuc, Vijay Ramaswamy, Stephen Mack, Deena M A Gendoo, Marc Remke, Xiaochong Wu, Livia Garzia, Betty Luu, Florence Cavalli,[...]. Acta Neuropathol 2015
52
50

ArrayExpress update - from bulk to single-cell expression data.
Awais Athar, Anja Füllgrabe, Nancy George, Haider Iqbal, Laura Huerta, Ahmed Ali, Catherine Snow, Nuno A Fonseca, Robert Petryszak, Irene Papatheodorou,[...]. Nucleic Acids Res 2019
174
50

De novo identification of differentially methylated regions in the human genome.
Timothy J Peters, Michael J Buckley, Aaron L Statham, Ruth Pidsley, Katherine Samaras, Reginald V Lord, Susan J Clark, Peter L Molloy. Epigenetics Chromatin 2015
363
50

Marmal-aid--a database for Infinium HumanMethylation450.
Robert Lowe, Vardhman K Rakyan. BMC Bioinformatics 2013
37
50

Orchestrating high-throughput genomic analysis with Bioconductor.
Wolfgang Huber, Vincent J Carey, Robert Gentleman, Simon Anders, Marc Carlson, Benilton S Carvalho, Hector Corrada Bravo, Sean Davis, Laurent Gatto, Thomas Girke,[...]. Nat Methods 2015
50

Genome-wide methylation profiles reveal quantitative views of human aging rates.
Gregory Hannum, Justin Guinney, Ling Zhao, Li Zhang, Guy Hughes, SriniVas Sadda, Brandy Klotzle, Marina Bibikova, Jian-Bing Fan, Yuan Gao,[...]. Mol Cell 2013
50

Age-associated DNA methylation changes in immune genes, histone modifiers and chromatin remodeling factors within 5 years after birth in human blood leukocytes.
Nathalie Acevedo, Lovisa E Reinius, Morana Vitezic, Vittorio Fortino, Cilla Söderhäll, Hanna Honkanen, Riitta Veijola, Olli Simell, Jorma Toppari, Jorma Ilonen,[...]. Clin Epigenetics 2015
50
50

DiseaseMeth version 2.0: a major expansion and update of the human disease methylation database.
Yichun Xiong, Yanjun Wei, Yue Gu, Shumei Zhang, Jie Lyu, Bin Zhang, Chuangeng Chen, Jiang Zhu, Yihan Wang, Hongbo Liu,[...]. Nucleic Acids Res 2017
63
50

DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns.
Kaie Lokk, Vijayachitra Modhukur, Balaji Rajashekar, Kaspar Märtens, Reedik Mägi, Raivo Kolde, Marina Koltšina, Torbjörn K Nilsson, Jaak Vilo, Andres Salumets,[...]. Genome Biol 2014
215
50

NCBI GEO: archive for functional genomics data sets--update.
Tanya Barrett, Stephen E Wilhite, Pierre Ledoux, Carlos Evangelista, Irene F Kim, Maxim Tomashevsky, Kimberly A Marshall, Katherine H Phillippy, Patti M Sherman, Michelle Holko,[...]. Nucleic Acids Res 2013
50

CpG island methylator phenotype in cancer.
Jean-Pierre Issa. Nat Rev Cancer 2004
754
50

Epigenomic analysis detects aberrant super-enhancer DNA methylation in human cancer.
Holger Heyn, Enrique Vidal, Humberto J Ferreira, Miguel Vizoso, Sergi Sayols, Antonio Gomez, Sebastian Moran, Raquel Boque-Sastre, Sonia Guil, Anna Martinez-Cardus,[...]. Genome Biol 2016
118
50

Epigenetic profiling of somatic tissues from human autopsy specimens identifies tissue- and individual-specific DNA methylation patterns.
Hyang-Min Byun, Kimberly D Siegmund, Fei Pan, Daniel J Weisenberger, Gary Kanel, Peter W Laird, Allen S Yang. Hum Mol Genet 2009
186
50

The history of cancer epigenetics.
Andrew P Feinberg, Benjamin Tycko. Nat Rev Cancer 2004
50


The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores.
Rafael A Irizarry, Christine Ladd-Acosta, Bo Wen, Zhijin Wu, Carolina Montano, Patrick Onyango, Hengmi Cui, Kevin Gabo, Michael Rongione, Maree Webster,[...]. Nat Genet 2009
50

Correlation of an epigenetic mitotic clock with cancer risk.
Zhen Yang, Andrew Wong, Diana Kuh, Dirk S Paul, Vardhman K Rakyan, R David Leslie, Shijie C Zheng, Martin Widschwendter, Stephan Beck, Andrew E Teschendorff. Genome Biol 2016
82
50

The Encyclopedia of DNA elements (ENCODE): data portal update.
Carrie A Davis, Benjamin C Hitz, Cricket A Sloan, Esther T Chan, Jean M Davidson, Idan Gabdank, Jason A Hilton, Kriti Jain, Ulugbek K Baymuradov, Aditi K Narayanan,[...]. Nucleic Acids Res 2018
557
50

MethBank 3.0: a database of DNA methylomes across a variety of species.
Rujiao Li, Fang Liang, Mengwei Li, Dong Zou, Shixiang Sun, Yongbing Zhao, Wenming Zhao, Yiming Bao, Jingfa Xiao, Zhang Zhang. Nucleic Acids Res 2018
23
50


Low-level processing of Illumina Infinium DNA Methylation BeadArrays.
Timothy J Triche, Daniel J Weisenberger, David Van Den Berg, Peter W Laird, Kimberly D Siegmund. Nucleic Acids Res 2013
327
50

IGF2 and IGF1R mRNAs Are Detectable in Human Spermatozoa.
Rossella Cannarella, Rosita A Condorelli, Sandro La Vignera, Catia Bellucci, Giovanni Luca, Riccardo Calafiore, Aldo E Calogero. World J Mens Health 2020
4
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.