A citation-based method for searching scientific literature

Ryan Patrick Mackay, Qinqin Xu, Paul M Weinberger. DNA Cell Biol 2020
Times Cited: 3







List of co-cited articles
7 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


R-loops: formation, function, and relevance to cell stress.
David F Allison, Gang Greg Wang. Cell Stress 2019
33
66

Depletion of the RNA binding protein HNRNPD impairs homologous recombination by inhibiting DNA-end resection and inducing R-loop accumulation.
Luigi Alfano, Antonella Caporaso, Angela Altieri, Milena Dell'Aquila, Claudia Landi, Luca Bini, Francesca Pentimalli, Antonio Giordano. Nucleic Acids Res 2019
18
66

R Loops and Links to Human Disease.
Patricia Richard, James L Manley. J Mol Biol 2017
74
66

Breaking bad: R-loops and genome integrity.
Julie Sollier, Karlene A Cimprich. Trends Cell Biol 2015
189
66

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
432
66

Genome-wide function of THO/TREX in active genes prevents R-loop-dependent replication obstacles.
Belén Gómez-González, María García-Rubio, Rodrigo Bermejo, Hélène Gaillard, Katsuhiko Shirahige, Antonio Marín, Marco Foiani, Andrés Aguilera. EMBO J 2011
145
66



Replication protein A binds RNA and promotes R-loop formation.
Olga M Mazina, Srinivas Somarowthu, Lyudmila Y Kadyrova, Andrey G Baranovskiy, Tahir H Tahirov, Farid A Kadyrov, Alexander V Mazin. J Biol Chem 2020
9
33

DNA polymerase theta (Polθ) - an error-prone polymerase necessary for genome stability.
Alessandra Brambati, Raymond Mario Barry, Agnel Sfeir. Curr Opin Genet Dev 2020
17
33


Endogenous DNA double-strand breaks: production, fidelity of repair, and induction of cancer.
Michael M Vilenchik, Alfred G Knudson. Proc Natl Acad Sci U S A 2003
418
33

Decoding non-random mutational signatures at Cas9 targeted sites.
Amir Taheri-Ghahfarokhi, Benjamin J M Taylor, Roberto Nitsch, Anders Lundin, Anna-Lina Cavallo, Katja Madeyski-Bengtson, Fredrik Karlsson, Maryam Clausen, Ryan Hicks, Lorenz M Mayr,[...]. Nucleic Acids Res 2018
48
33


DNA polymerase theta contributes to the generation of C/G mutations during somatic hypermutation of Ig genes.
Keiji Masuda, Rika Ouchida, Arata Takeuchi, Takashi Saito, Haruhiko Koseki, Kiyoko Kawamura, Masatoshi Tagawa, Takeshi Tokuhisa, Takachika Azuma, Jiyang O-Wang. Proc Natl Acad Sci U S A 2005
87
33

Increased levels of RECQ5 shift DNA repair from canonical to alternative pathways.
Henry C Olson, Luther Davis, Kostantin Kiianitsa, Kevin J Khoo, Yilun Liu, Theo A Knijnenburg, Nancy Maizels. Nucleic Acids Res 2018
5
33


POLQ suppresses interhomolog recombination and loss of heterozygosity at targeted DNA breaks.
Luther Davis, Kevin J Khoo, Yinbo Zhang, Nancy Maizels. Proc Natl Acad Sci U S A 2020
7
33

RPA Stabilization of Single-Stranded DNA Is Critical for Break-Induced Replication.
Patrick Ruff, Roberto A Donnianni, Eleanor Glancy, Julyun Oh, Lorraine S Symington. Cell Rep 2016
31
33

Rev7 and 53BP1/Crb2 prevent RecQ helicase-dependent hyper-resection of DNA double-strand breaks.
Bryan A Leland, Angela C Chen, Amy Y Zhao, Robert C Wharton, Megan C King. Elife 2018
12
33

Analysis of off-target effects of CRISPR/Cas-derived RNA-guided endonucleases and nickases.
Seung Woo Cho, Sojung Kim, Yongsub Kim, Jiyeon Kweon, Heon Seok Kim, Sangsu Bae, Jin-Soo Kim. Genome Res 2014
820
33

GUIDE-seq enables genome-wide profiling of off-target cleavage by CRISPR-Cas nucleases.
Shengdar Q Tsai, Zongli Zheng, Nhu T Nguyen, Matthew Liebers, Ved V Topkar, Vishal Thapar, Nicolas Wyvekens, Cyd Khayter, A John Iafrate, Long P Le,[...]. Nat Biotechnol 2015
33

CRISPR/Cas9 cleavages in budding yeast reveal templated insertions and strand-specific insertion/deletion profiles.
Brenda R Lemos, Adam C Kaplan, Ji Eun Bae, Alexander E Ferrazzoli, James Kuo, Ranjith P Anand, David P Waterman, James E Haber. Proc Natl Acad Sci U S A 2018
75
33

Dual loss of human POLQ and LIG4 abolishes random integration.
Shinta Saito, Ryo Maeda, Noritaka Adachi. Nat Commun 2017
42
33

Detection and quantification of rare mutations with massively parallel sequencing.
Isaac Kinde, Jian Wu, Nick Papadopoulos, Kenneth W Kinzler, Bert Vogelstein. Proc Natl Acad Sci U S A 2011
692
33

Assaying Repair at DNA Nicks.
Luther Davis, Yinbo Zhang, Nancy Maizels. Methods Enzymol 2018
5
33

Inactivation of Pol θ and C-NHEJ eliminates off-target integration of exogenous DNA.
Alex N Zelensky, Joost Schimmel, Hanneke Kool, Roland Kanaar, Marcel Tijsterman. Nat Commun 2017
63
33

SHLD2/FAM35A co-operates with REV7 to coordinate DNA double-strand break repair pathway choice.
Steven Findlay, John Heath, Vincent M Luo, Abba Malina, Théo Morin, Yan Coulombe, Billel Djerir, Zhigang Li, Arash Samiei, Estelle Simo-Cheyou,[...]. EMBO J 2018
58
33


Initiation of homologous recombination at DNA nicks.
Nancy Maizels, Luther Davis. Nucleic Acids Res 2018
19
33

Mechanism of suppression of chromosomal instability by DNA polymerase POLQ.
Matthew J Yousefzadeh, David W Wyatt, Kei-Ichi Takata, Yunxiang Mu, Sean C Hensley, Junya Tomida, Göran O Bylund, Sylvie Doublié, Erik Johansson, Dale A Ramsden,[...]. PLoS Genet 2014
144
33

The shieldin complex mediates 53BP1-dependent DNA repair.
Sylvie M Noordermeer, Salomé Adam, Dheva Setiaputra, Marco Barazas, Stephen J Pettitt, Alexanda K Ling, Michele Olivieri, Alejandro Álvarez-Quilón, Nathalie Moatti, Michal Zimmermann,[...]. Nature 2018
222
33

POLQ Overexpression Is Associated with an Increased Somatic Mutation Load and PLK4 Overexpression in Lung Adenocarcinoma.
Kazuya Shinmura, Hisami Kato, Yuichi Kawanishi, Katsuhiro Yoshimura, Kazuo Tsuchiya, Yoshiyuki Takahara, Seiji Hosokawa, Akikazu Kawase, Kazuhito Funai, Haruhiko Sugimura. Cancers (Basel) 2019
8
33

Tracking genome engineering outcome at individual DNA breakpoints.
Michael T Certo, Byoung Y Ryu, James E Annis, Mikhail Garibov, Jordan Jarjour, David J Rawlings, Andrew M Scharenberg. Nat Methods 2011
191
33

Essential Roles for Polymerase θ-Mediated End Joining in the Repair of Chromosome Breaks.
David W Wyatt, Wanjuan Feng, Michael P Conlin, Matthew J Yousefzadeh, Steven A Roberts, Piotr Mieczkowski, Richard D Wood, Gaorav P Gupta, Dale A Ramsden. Mol Cell 2016
118
33


Post-translational Regulation of Cas9 during G1 Enhances Homology-Directed Repair.
Tony Gutschner, Monika Haemmerle, Giannicola Genovese, Giulio F Draetta, Lynda Chin. Cell Rep 2016
143
33



Dna2 nuclease-helicase structure, mechanism and regulation by Rpa.
Chun Zhou, Sergei Pourmal, Nikola P Pavletich. Elife 2015
61
33

DNA polymerase θ (POLQ), double-strand break repair, and cancer.
Richard D Wood, Sylvie Doublié. DNA Repair (Amst) 2016
101
33



Genetic analysis of yeast RPA1 reveals its multiple functions in DNA metabolism.
K Umezu, N Sugawara, C Chen, J E Haber, R D Kolodner. Genetics 1998
153
33

RPA coordinates DNA end resection and prevents formation of DNA hairpins.
Huan Chen, Michael Lisby, Lorraine S Symington. Mol Cell 2013
145
33

DNA polymerase ζ in DNA replication and repair.
Sara K Martin, Richard D Wood. Nucleic Acids Res 2019
24
33

Low-fidelity DNA synthesis by human DNA polymerase theta.
Mercedes E Arana, Mineaki Seki, Richard D Wood, Igor B Rogozin, Thomas A Kunkel. Nucleic Acids Res 2008
95
33

The basic cleft of RPA70N binds multiple checkpoint proteins, including RAD9, to regulate ATR signaling.
Xin Xu, Sivaraja Vaithiyalingam, Gloria G Glick, Daniel A Mordes, Walter J Chazin, David Cortez. Mol Cell Biol 2008
125
33

CRISPResso2 provides accurate and rapid genome editing sequence analysis.
Kendell Clement, Holly Rees, Matthew C Canver, Jason M Gehrke, Rick Farouni, Jonathan Y Hsu, Mitchel A Cole, David R Liu, J Keith Joung, Daniel E Bauer,[...]. Nat Biotechnol 2019
201
33

Mechanism of the ATP-dependent DNA end-resection machinery from Saccharomyces cerevisiae.
Hengyao Niu, Woo-Hyun Chung, Zhu Zhu, Youngho Kwon, Weixing Zhao, Peter Chi, Rohit Prakash, Changhyun Seong, Dongqing Liu, Lucy Lu,[...]. Nature 2010
272
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.