A citation-based method for searching scientific literature

Yuzuru Itoh, Andreas Naschberger, Narges Mortezaei, Johannes M Herrmann, Alexey Amunts. Nat Commun 2020
Times Cited: 14







List of co-cited articles
169 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Ribosome. The structure of the human mitochondrial ribosome.
Alexey Amunts, Alan Brown, Jaan Toots, Sjors H W Scheres, V Ramakrishnan. Science 2015
296
57

UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
57

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM.
Eva Kummer, Marc Leibundgut, Oliver Rackham, Richard G Lee, Daniel Boehringer, Aleksandra Filipovska, Nenad Ban. Nature 2018
60
57

The structure of the yeast mitochondrial ribosome.
Nirupa Desai, Alan Brown, Alexey Amunts, V Ramakrishnan. Science 2017
105
57

Evolutionary shift toward protein-based architecture in trypanosomal mitochondrial ribosomes.
David J F Ramrath, Moritz Niemann, Marc Leibundgut, Philipp Bieri, Céline Prange, Elke K Horn, Alexander Leitner, Daniel Boehringer, André Schneider, Nenad Ban. Science 2018
66
57

Ribosome. The complete structure of the 55S mammalian mitochondrial ribosome.
Basil J Greber, Philipp Bieri, Marc Leibundgut, Alexander Leitner, Ruedi Aebersold, Daniel Boehringer, Nenad Ban. Science 2015
258
50

Structure of the yeast mitochondrial large ribosomal subunit.
Alexey Amunts, Alan Brown, Xiao-Chen Bai, Jose L Llácer, Tanweer Hussain, Paul Emsley, Fei Long, Garib Murshudov, Sjors H W Scheres, V Ramakrishnan. Science 2014
395
50

UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
Thomas D Goddard, Conrad C Huang, Elaine C Meng, Eric F Pettersen, Gregory S Couch, John H Morris, Thomas E Ferrin. Protein Sci 2018
50

Structural basis of mitochondrial translation.
Shintaro Aibara, Vivek Singh, Angelika Modelska, Alexey Amunts. Elife 2020
27
50

Structure of the Human Mitochondrial Ribosome Studied In Situ by Cryoelectron Tomography.
Robert Englmeier, Stefan Pfeffer, Friedrich Förster. Structure 2017
50
42

Structures of the human mitochondrial ribosome in native states of assembly.
Alan Brown, Sorbhi Rathore, Dari Kimanius, Shintaro Aibara, Xiao-Chen Bai, Joanna Rorbach, Alexey Amunts, V Ramakrishnan. Nat Struct Mol Biol 2017
89
42

Organization and Regulation of Mitochondrial Protein Synthesis.
Martin Ott, Alexey Amunts, Alan Brown. Annu Rev Biochem 2016
151
42

Structure and Function of the Mitochondrial Ribosome.
Basil J Greber, Nenad Ban. Annu Rev Biochem 2016
136
42


Structural Patching Fosters Divergence of Mitochondrial Ribosomes.
Anton S Petrov, Elizabeth C Wood, Chad R Bernier, Ashlyn M Norris, Alan Brown, Alexey Amunts. Mol Biol Evol 2019
32
42

Mechanism of membrane-tethered mitochondrial protein synthesis.
Yuzuru Itoh, Juni Andréll, Austin Choi, Uwe Richter, Priyanka Maiti, Robert B Best, Antoni Barrientos, Brendan J Battersby, Alexey Amunts. Science 2021
30
42

The complete structure of the large subunit of the mammalian mitochondrial ribosome.
Basil J Greber, Daniel Boehringer, Marc Leibundgut, Philipp Bieri, Alexander Leitner, Nikolaus Schmitz, Ruedi Aebersold, Nenad Ban. Nature 2014
180
35

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy.
Shawn Q Zheng, Eugene Palovcak, Jean-Paul Armache, Kliment A Verba, Yifan Cheng, David A Agard. Nat Methods 2017
35

Mitochondrial ribosome assembly in health and disease.
Dasmanthie De Silva, Ya-Ting Tu, Alexey Amunts, Flavia Fontanesi, Antoni Barrientos. Cell Cycle 2015
105
35

Cryo-EM structure of the RNA-rich plant mitochondrial ribosome.
Florent Waltz, Heddy Soufari, Anthony Bochler, Philippe Giegé, Yaser Hashem. Nat Plants 2020
31
35

Mitoribosomal small subunit biogenesis in trypanosomes involves an extensive assembly machinery.
Martin Saurer, David J F Ramrath, Moritz Niemann, Salvatore Calderaro, Céline Prange, Simone Mattei, Alain Scaiola, Alexander Leitner, Philipp Bieri, Elke K Horn,[...]. Science 2019
32
35

New tools for automated high-resolution cryo-EM structure determination in RELION-3.
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim Jh Hagen, Erik Lindahl, Sjors Hw Scheres. Elife 2018
35


Distinct pre-initiation steps in human mitochondrial translation.
Anas Khawaja, Yuzuru Itoh, Cristina Remes, Henrik Spåhr, Olessya Yukhnovets, Henning Höfig, Alexey Amunts, Joanna Rorbach. Nat Commun 2020
19
28

Structure of the large ribosomal subunit from human mitochondria.
Alan Brown, Alexey Amunts, Xiao-Chen Bai, Yoichiro Sugimoto, Patricia C Edwards, Garib Murshudov, Sjors H W Scheres, V Ramakrishnan. Science 2014
190
28

Architecture of the large subunit of the mammalian mitochondrial ribosome.
Basil J Greber, Daniel Boehringer, Alexander Leitner, Philipp Bieri, Felix Voigts-Hoffmann, Jan P Erzberger, Marc Leibundgut, Ruedi Aebersold, Nenad Ban. Nature 2014
157
28

Organization of the mitochondrial translation machinery studied in situ by cryoelectron tomography.
Stefan Pfeffer, Michael W Woellhaf, Johannes M Herrmann, Friedrich Förster. Nat Commun 2015
83
28


A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
348
28

Parallel Structural Evolution of Mitochondrial Ribosomes and OXPHOS Complexes.
Eli O van der Sluis, Heike Bauerschmitt, Thomas Becker, Thorsten Mielke, Jens Frauenfeld, Otto Berninghausen, Walter Neupert, Johannes M Herrmann, Roland Beckmann. Genome Biol Evol 2015
54
28

Small is big in Arabidopsis mitochondrial ribosome.
Florent Waltz, Tan-Trung Nguyen, Mathilde Arrivé, Anthony Bochler, Johana Chicher, Philippe Hammann, Lauriane Kuhn, Martine Quadrado, Hakim Mireau, Yaser Hashem,[...]. Nat Plants 2019
55
28

Structural Insights into the Mechanism of Mitoribosomal Large Subunit Biogenesis.
Mateusz Jaskolowski, David J F Ramrath, Philipp Bieri, Moritz Niemann, Simone Mattei, Salvatore Calderaro, Marc Leibundgut, Elke K Horn, Daniel Boehringer, André Schneider,[...]. Mol Cell 2020
24
28

MRM2 and MRM3 are involved in biogenesis of the large subunit of the mitochondrial ribosome.
Joanna Rorbach, Pierre Boesch, Payam A Gammage, Thomas J J Nicholls, Sarah F Pearce, Dipali Patel, Andreas Hauser, Fabiana Perocchi, Michal Minczuk. Mol Biol Cell 2014
70
28

Interconnected assembly factors regulate the biogenesis of mitoribosomal large subunit.
Victor Tobiasson, Ondřej Gahura, Shintaro Aibara, Rozbeh Baradaran, Alena Zíková, Alexey Amunts. EMBO J 2021
14
28

Features and development of Coot.
P Emsley, B Lohkamp, W G Scott, K Cowtan. Acta Crystallogr D Biol Crystallogr 2010
28

Structure of the mature kinetoplastids mitoribosome and insights into its large subunit biogenesis.
Heddy Soufari, Florent Waltz, Camila Parrot, Stéphanie Durrieu-Gaillard, Anthony Bochler, Lauriane Kuhn, Marie Sissler, Yaser Hashem. Proc Natl Acad Sci U S A 2020
14
28

Mitochondria: impaired mitochondrial translation in human disease.
Veronika Boczonadi, Rita Horvath. Int J Biochem Cell Biol 2014
123
21

Synchronized mitochondrial and cytosolic translation programs.
Mary T Couvillion, Iliana C Soto, Gergana Shipkovenska, L Stirling Churchman. Nature 2016
166
21

MRPS25 mutations impair mitochondrial translation and cause encephalomyopathy.
Enrico Bugiardini, Alice L Mitchell, Ilaria Dalla Rosa, Hue-Tran Horning-Do, Alan M Pitmann, Olivia V Poole, Janice L Holton, Sachit Shah, Cathy Woodward, Iain Hargreaves,[...]. Hum Mol Genet 2019
15
21

Structural insights into unique features of the human mitochondrial ribosome recycling.
Ravi K Koripella, Manjuli R Sharma, Paul Risteff, Pooja Keshavan, Rajendra K Agrawal. Proc Natl Acad Sci U S A 2019
21
21

Control of protein synthesis in yeast mitochondria: the concept of translational activators.
Johannes M Herrmann, Michael W Woellhaf, Nathalie Bonnefoy. Biochim Biophys Acta 2013
99
21

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.
Fabian Sievers, Andreas Wilm, David Dineen, Toby J Gibson, Kevin Karplus, Weizhong Li, Rodrigo Lopez, Hamish McWilliam, Michael Remmert, Johannes Söding,[...]. Mol Syst Biol 2011
21

High-resolution structure of the Escherichia coli ribosome.
Jonas Noeske, Michael R Wasserman, Daniel S Terry, Roger B Altman, Scott C Blanchard, Jamie H D Cate. Nat Struct Mol Biol 2015
146
21

Revising the Structural Diversity of Ribosomal Proteins Across the Three Domains of Life.
Sergey Melnikov, Kasidet Manakongtreecheep, Dieter Söll. Mol Biol Evol 2018
37
21

Cryo-EM structure of the spinach chloroplast ribosome reveals the location of plastid-specific ribosomal proteins and extensions.
Michael Graf, Stefan Arenz, Paul Huter, Alexandra Dönhöfer, Jirí Novácek, Daniel N Wilson. Nucleic Acids Res 2017
31
21

Complexome Profiling Reveals Association of PPR Proteins with Ribosomes in the Mitochondria of Plants.
Nils Rugen, Henryk Straube, Linda E Franken, Hans-Peter Braun, Holger Eubel. Mol Cell Proteomics 2019
20
21

The fragmented mitochondrial ribosomal RNAs of Plasmodium falciparum.
Jean E Feagin, Maria Isabel Harrell, Jung C Lee, Kevin J Coe, Bryan H Sands, Jamie J Cannone, Germaine Tami, Murray N Schnare, Robin R Gutell. PLoS One 2012
71
21

Reconstructing the evolution of the mitochondrial ribosomal proteome.
Paulien Smits, Jan A M Smeitink, Lambert P van den Heuvel, Martijn A Huynen, Thijs J G Ettema. Nucleic Acids Res 2007
133
21



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.