A citation-based method for searching scientific literature

Weizhi Ouyang, Dan Xiong, Guoliang Li, Xingwang Li. Mol Plant 2020
Times Cited: 19







List of co-cited articles
221 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
52


3D Chromatin Architecture of Large Plant Genomes Determined by Local A/B Compartments.
Pengfei Dong, Xiaoyu Tu, Po-Yu Chu, Peitao Lü, Ning Zhu, Donald Grierson, Baijuan Du, Pinghua Li, Silin Zhong. Mol Plant 2017
141
47

Genome-wide analysis of local chromatin packing in Arabidopsis thaliana.
Congmao Wang, Chang Liu, Damian Roqueiro, Dominik Grimm, Rebecca Schwab, Claude Becker, Christa Lanz, Detlef Weigel. Genome Res 2015
182
47

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
47

Prominent topologically associated domains differentiate global chromatin packing in rice from Arabidopsis.
Chang Liu, Ying-Juan Cheng, Jia-Wei Wang, Detlef Weigel. Nat Plants 2017
126
42

Three-dimensional chromatin packing and positioning of plant genomes.
Ezgi Süheyla Doğan, Chang Liu. Nat Plants 2018
61
42

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
42

Long-range interactions between proximal and distal regulatory regions in maize.
En Li, Han Liu, Liangliang Huang, Xiangbo Zhang, Xiaomei Dong, Weibin Song, Haiming Zhao, Jinsheng Lai. Nat Commun 2019
48
36

Chromatin interaction maps reveal genetic regulation for quantitative traits in maize.
Yong Peng, Dan Xiong, Lun Zhao, Weizhi Ouyang, Shuangqi Wang, Jun Sun, Qing Zhang, Pengpeng Guan, Liang Xie, Wenqiang Li,[...]. Nat Commun 2019
61
36

Genome-wide analysis of chromatin packing in Arabidopsis thaliana at single-gene resolution.
Chang Liu, Congmao Wang, George Wang, Claude Becker, Maricris Zaidem, Detlef Weigel. Genome Res 2016
129
36

Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis.
Suhua Feng, Shawn J Cokus, Veit Schubert, Jixian Zhai, Matteo Pellegrini, Steven E Jacobsen. Mol Cell 2014
210
36

Capturing chromosome conformation.
Job Dekker, Karsten Rippe, Martijn Dekker, Nancy Kleckner. Science 2002
31

Chromatin loops associated with active genes and heterochromatin shape rice genome architecture for transcriptional regulation.
Lun Zhao, Shuangqi Wang, Zhilin Cao, Weizhi Ouyang, Qing Zhang, Liang Xie, Ruiqin Zheng, Minrong Guo, Meng Ma, Zhe Hu,[...]. Nat Commun 2019
52
31

3D genome architecture coordinates trans and cis regulation of differentially expressed ear and tassel genes in maize.
Yonghao Sun, Liang Dong, Ying Zhang, Da Lin, Weize Xu, Changxiong Ke, Linqian Han, Lulu Deng, Guoliang Li, David Jackson,[...]. Genome Biol 2020
39
31

Evolutionary dynamics of 3D genome architecture following polyploidization in cotton.
Maojun Wang, Pengcheng Wang, Min Lin, Zhengxiu Ye, Guoliang Li, Lili Tu, Chao Shen, Jianying Li, Qingyong Yang, Xianlong Zhang. Nat Plants 2018
85
31

Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions.
Darío G Lupiáñez, Katerina Kraft, Verena Heinrich, Peter Krawitz, Francesco Brancati, Eva Klopocki, Denise Horn, Hülya Kayserili, John M Opitz, Renata Laxova,[...]. Cell 2015
31

Single-cell three-dimensional genome structures of rice gametes and unicellular zygotes.
Shaoli Zhou, Wei Jiang, Yu Zhao, Dao-Xiu Zhou. Nat Plants 2019
38
31

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
31

Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure.
Ezgi Süheyla Karaaslan, Nan Wang, Natalie Faiß, Yuyu Liang, Sean A Montgomery, Sascha Laubinger, Kenneth Wayne Berendzen, Frédéric Berger, Holger Breuninger, Chang Liu. Nat Plants 2020
28
31

Principles of genome folding into topologically associating domains.
Quentin Szabo, Frédéric Bantignies, Giacomo Cavalli. Sci Adv 2019
229
31

Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.
Sofia A Quinodoz, Noah Ollikainen, Barbara Tabak, Ali Palla, Jan Marten Schmidt, Elizabeth Detmar, Mason M Lai, Alexander A Shishkin, Prashant Bhat, Yodai Takei,[...]. Cell 2018
389
26

Genome-wide Hi-C analysis reveals extensive hierarchical chromatin interactions in rice.
Qianli Dong, Ning Li, Xiaochong Li, Zan Yuan, Dejian Xie, Xiaofei Wang, Jianing Li, Yanan Yu, Jinbin Wang, Baoxu Ding,[...]. Plant J 2018
77
26

Tissue-specific Hi-C analyses of rice, foxtail millet and maize suggest non-canonical function of plant chromatin domains.
Pengfei Dong, Xiaoyu Tu, Haoxuan Li, Jianhua Zhang, Donald Grierson, Pinghua Li, Silin Zhong. J Integr Plant Biol 2020
38
26

3D genome organization: a role for phase separation and loop extrusion?
Maike Stam, Mariliis Tark-Dame, Paul Fransz. Curr Opin Plant Biol 2019
34
26

Nonrandom domain organization of the Arabidopsis genome at the nuclear periphery.
Xiuli Bi, Ying-Juan Cheng, Bo Hu, Xiaoli Ma, Rui Wu, Jia-Wei Wang, Chang Liu. Genome Res 2017
68
26

Three-dimensional folding and functional organization principles of the Drosophila genome.
Tom Sexton, Eitan Yaffe, Ephraim Kenigsberg, Frédéric Bantignies, Benjamin Leblanc, Michael Hoichman, Hugues Parrinello, Amos Tanay, Giacomo Cavalli. Cell 2012
26

Heat stress-induced transposon activation correlates with 3D chromatin organization rearrangement in Arabidopsis.
Linhua Sun, Yuqing Jing, Xinyu Liu, Qi Li, Zhihui Xue, Zhukuan Cheng, Daowen Wang, Hang He, Weiqiang Qian. Nat Commun 2020
42
26

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
897
26

3D structures of individual mammalian genomes studied by single-cell Hi-C.
Tim J Stevens, David Lando, Srinjan Basu, Liam P Atkinson, Yang Cao, Steven F Lee, Martin Leeb, Kai J Wohlfahrt, Wayne Boucher, Aoife O'Shaughnessy-Kirwan,[...]. Nature 2017
437
26

Wheat chromatin architecture is organized in genome territories and transcription factories.
Lorenzo Concia, Alaguraj Veluchamy, Juan S Ramirez-Prado, Azahara Martin-Ramirez, Ying Huang, Magali Perez, Severine Domenichini, Natalia Y Rodriguez Granados, Soonkap Kim, Thomas Blein,[...]. Genome Biol 2020
55
26

Interphase chromosomes in Arabidopsis are organized as well defined chromocenters from which euchromatin loops emanate.
Paul Fransz, J Hans De Jong, Martin Lysak, Monica Ruffini Castiglione, Ingo Schubert. Proc Natl Acad Sci U S A 2002
323
26

Evolutionarily Conserved Principles Predict 3D Chromatin Organization.
M Jordan Rowley, Michael H Nichols, Xiaowen Lyu, Masami Ando-Kuri, I Sarahi M Rivera, Karen Hermetz, Ping Wang, Yijun Ruan, Victor G Corces. Mol Cell 2017
265
26

MORC family ATPases required for heterochromatin condensation and gene silencing.
Guillaume Moissiard, Shawn J Cokus, Joshua Cary, Suhua Feng, Allison C Billi, Hume Stroud, Dylan Husmann, Ye Zhan, Bryan R Lajoie, Rachel Patton McCord,[...]. Science 2012
212
21

An oestrogen-receptor-alpha-bound human chromatin interactome.
Melissa J Fullwood, Mei Hui Liu, You Fu Pan, Jun Liu, Han Xu, Yusoff Bin Mohamed, Yuriy L Orlov, Stoyan Velkov, Andrea Ho, Poh Huay Mei,[...]. Nature 2009
21

HiChIP: efficient and sensitive analysis of protein-directed genome architecture.
Maxwell R Mumbach, Adam J Rubin, Ryan A Flynn, Chao Dai, Paul A Khavari, William J Greenleaf, Howard Y Chang. Nat Methods 2016
515
21

CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription.
Zhonghui Tang, Oscar Junhong Luo, Xingwang Li, Meizhen Zheng, Jacqueline Jufen Zhu, Przemyslaw Szalaj, Pawel Trzaskoma, Adriana Magalska, Jakub Wlodarczyk, Blazej Ruszczycki,[...]. Cell 2015
556
21

Organization and function of the 3D genome.
Boyan Bonev, Giacomo Cavalli. Nat Rev Genet 2016
453
21

Put your 3D glasses on: plant chromatin is on show.
Natalia Y Rodriguez-Granados, Juan S Ramirez-Prado, Alaguraj Veluchamy, David Latrasse, Cécile Raynaud, Martin Crespi, Federico Ariel, Moussa Benhamed. J Exp Bot 2016
44
21

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
21


Plant and animal chromatin three-dimensional organization: similar structures but different functions.
Pengfei Dong, Xiaoyu Tu, Zizheng Liang, Byung-Ho Kang, Silin Zhong. J Exp Bot 2020
20
21

Plant lamin-like proteins mediate chromatin tethering at the nuclear periphery.
Bo Hu, Nan Wang, Xiuli Bi, Ezgi Süheyla Karaaslan, Anna-Lena Weber, Wangsheng Zhu, Kenneth Wayne Berendzen, Chang Liu. Genome Biol 2019
49
21


Tissue- and expression level-specific chromatin looping at maize b1 epialleles.
Marieke Louwers, Rechien Bader, Max Haring, Roel van Driel, Wouter de Laat, Maike Stam. Plant Cell 2009
104
21

Chromosome territory arrangement and homologous pairing in nuclei of Arabidopsis thaliana are predominantly random except for NOR-bearing chromosomes.
Ales Pecinka, Veit Schubert, Armin Meister, Gregor Kreth, Marco Klatte, Martin A Lysak, Jörg Fuchs, Ingo Schubert. Chromosoma 2004
167
21

ChromEMT: Visualizing 3D chromatin structure and compaction in interphase and mitotic cells.
Horng D Ou, Sébastien Phan, Thomas J Deerinck, Andrea Thor, Mark H Ellisman, Clodagh C O'Shea. Science 2017
429
21

Active and repressed biosynthetic gene clusters have spatially distinct chromosome states.
Hans-Wilhelm Nützmann, Daniel Doerr, América Ramírez-Colmenero, Jesús Emiliano Sotelo-Fonseca, Eva Wegel, Marco Di Stefano, Steven W Wingett, Peter Fraser, Laurence Hurst, Selene L Fernandez-Valverde,[...]. Proc Natl Acad Sci U S A 2020
41
21

Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop.
Federico Ariel, Teddy Jegu, David Latrasse, Natali Romero-Barrios, Aurélie Christ, Moussa Benhamed, Martin Crespi. Mol Cell 2014
220
21

A gene loop containing the floral repressor FLC is disrupted in the early phase of vernalization.
Pedro Crevillén, Cagla Sonmez, Zhe Wu, Caroline Dean. EMBO J 2013
111
21


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.