A citation-based method for searching scientific literature

Jigme Dorji, Christy J Vander Jagt, Josie B Garner, Leah C Marett, Brett A Mason, Coralie M Reich, Ruidong Xiang, Emily L Clark, Benjamin G Cocks, Amanda J Chamberlain, Iona M MacLeod, Hans D Daetwyler. BMC Genomics 2020
Times Cited: 3







List of co-cited articles
5 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
66

Genome variants associated with RNA splicing variations in bovine are extensively shared between tissues.
Ruidong Xiang, Ben J Hayes, Christy J Vander Jagt, Iona M MacLeod, Majid Khansefid, Phil J Bowman, Zehu Yuan, Claire P Prowse-Wilkins, Coralie M Reich, Brett A Mason,[...]. BMC Genomics 2018
12
66

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
66

WGCNA: an R package for weighted correlation network analysis.
Peter Langfelder, Steve Horvath. BMC Bioinformatics 2008
66

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
66

Physiological basis for residual feed intake.
R M Herd, P F Arthur. J Anim Sci 2009
210
33


High-density genome-wide association study for residual feed intake in Holstein dairy cattle.
B Li, L Fang, D J Null, J L Hutchison, E E Connor, P M VanRaden, M J VandeHaar, R J Tempelman, K A Weigel, J B Cole. J Dairy Sci 2019
12
33

Genetics of alternative definitions of feed efficiency in grazing lactating dairy cows.
A M Hurley, N López-Villalobos, S McParland, E Lewis, E Kennedy, M O'Donovan, J L Burke, D P Berry. J Dairy Sci 2017
18
33

KEGG: kyoto encyclopedia of genes and genomes.
M Kanehisa, S Goto. Nucleic Acids Res 2000
33

Divergent selection for residual feed intake affects the transcriptomic and proteomic profiles of pig skeletal muscle.
A Vincent, I Louveau, F Gondret, C Tréfeu, H Gilbert, L Lefaucheur. J Anim Sci 2015
51
33

Relationships of feedlot feed efficiency, performance, and feeding behavior with metabolic rate, methane production, and energy partitioning in beef cattle.
J D Nkrumah, E K Okine, G W Mathison, K Schmid, C Li, J A Basarab, M A Price, Z Wang, S S Moore. J Anim Sci 2006
208
33

STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets.
Damian Szklarczyk, Annika L Gable, David Lyon, Alexander Junge, Stefan Wyder, Jaime Huerta-Cepas, Milan Simonovic, Nadezhda T Doncheva, John H Morris, Peer Bork,[...]. Nucleic Acids Res 2019
33

Genetic parameters for energy balance, feed efficiency, and related traits in Holstein cattle.
D M Spurlock, J C M Dekkers, R Fernando, D A Koltes, A Wolc. J Dairy Sci 2012
55
33

A review of the mitochondrial and glycolytic metabolism in human platelets and leukocytes: implications for their use as bioenergetic biomarkers.
Philip A Kramer, Saranya Ravi, Balu Chacko, Michelle S Johnson, Victor M Darley-Usmar. Redox Biol 2014
201
33

Proteomic analysis indicates that mitochondrial energy metabolism in skeletal muscle tissue is negatively correlated with feed efficiency in pigs.
Liangliang Fu, Yueyuan Xu, Ye Hou, Xiaolong Qi, Lian Zhou, Huiying Liu, Yu Luan, Lu Jing, Yuanxin Miao, Shuhong Zhao,[...]. Sci Rep 2017
23
33


Short communication: Validation of genomic breeding value predictions for feed intake and feed efficiency traits.
J E Pryce, O Gonzalez-Recio, J B Thornhill, L C Marett, W J Wales, M P Coffey, Y de Haas, R F Veerkamp, B J Hayes. J Dairy Sci 2014
11
33

MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins.
Sarah E Calvo, Karl R Clauser, Vamsi K Mootha. Nucleic Acids Res 2016
710
33

Differential expression of mitochondrial and extramitochondrial proteins in lymphocytes of male broilers with low and high feed efficiency.
K Lassiter, C Ojano-Dirain, M Iqbal, N R Pumford, N Tinsley, J Lay, R Liyanage, T Wing, M Cooper, W Bottje. Poult Sci 2006
14
33

Livestock and global change: emerging issues for sustainable food systems.
Mario Herrero, Philip K Thornton. Proc Natl Acad Sci U S A 2013
67
33

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.
Konstantin Okonechnikov, Ana Conesa, Fernando García-Alcalde. Bioinformatics 2016
441
33



Gene expression analysis of blood, liver, and muscle in cattle divergently selected for high and low residual feed intake.
M Khansefid, C A Millen, Y Chen, J E Pryce, A J Chamberlain, C J Vander Jagt, C Gondro, M E Goddard. J Anim Sci 2017
11
33

Identification of Hub Genes and Key Pathways Associated With Bipolar Disorder Based on Weighted Gene Co-expression Network Analysis.
Yang Liu, Hui-Yun Gu, Jie Zhu, Yu-Ming Niu, Chao Zhang, Guang-Ling Guo. Front Physiol 2019
13
33

Inter-relationships among alternative definitions of feed efficiency in grazing lactating dairy cows.
A M Hurley, N López-Villalobos, S McParland, E Kennedy, E Lewis, M O'Donovan, J L Burke, D P Berry. J Dairy Sci 2016
23
33

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nucleic Acids Res 2009
33

Genomic selection for feed efficiency in dairy cattle.
J E Pryce, W J Wales, Y de Haas, R F Veerkamp, B J Hayes. Animal 2014
36
33


Liver transcriptomic networks reveal main biological processes associated with feed efficiency in beef cattle.
Pamela A Alexandre, Lisette J A Kogelman, Miguel H A Santana, Danielle Passarelli, Lidia H Pulz, Paulo Fantinato-Neto, Paulo L Silva, Paulo R Leme, Ricardo F Strefezzi, Luiz L Coutinho,[...]. BMC Genomics 2015
62
33

mRNA expression of genes regulating oxidative phosphorylation in the muscle of beef cattle divergently ranked on residual feed intake.
Alan K Kelly, Sinead M Waters, Mark McGee, Rita G Fonseca, Ciara Carberry, David A Kenny. Physiol Genomics 2011
38
33


Hot topic: Definition and implementation of a breeding value for feed efficiency in dairy cows.
J E Pryce, O Gonzalez-Recio, G Nieuwhof, W J Wales, M P Coffey, B J Hayes, M E Goddard. J Dairy Sci 2015
40
33

Invited review: Body condition score and its association with dairy cow productivity, health, and welfare.
J R Roche, N C Friggens, J K Kay, M W Fisher, K J Stafford, D P Berry. J Dairy Sci 2009
399
33

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
33

RNA-seq of muscle from pigs divergent in feed efficiency and product quality identifies differences in immune response, growth, and macronutrient and connective tissue metabolism.
Justyna Horodyska, Klaus Wimmers, Henry Reyer, Nares Trakooljul, Anne Maria Mullen, Peadar G Lawlor, Ruth M Hamill. BMC Genomics 2018
19
33


Mutation in the COX4I1 gene is associated with short stature, poor weight gain and increased chromosomal breaks, simulating Fanconi anemia.
Bassam Abu-Libdeh, Liza Douiev, Sarah Amro, Maher Shahrour, Asaf Ta-Shma, Chaya Miller, Orly Elpeleg, Ann Saada. Eur J Hum Genet 2017
22
33

Proteomic investigation of liver from beef cattle (Bos indicus) divergently ranked on residual feed intake.
W A Baldassini, S F M Bonilha, R H Branco, J C S Vieira, P M Padilha, D P D Lanna. Mol Biol Rep 2018
3
33

Transcriptome profiling of the rumen epithelium of beef cattle differing in residual feed intake.
Rebecca S G Kong, Guanxiang Liang, Yanhong Chen, Paul Stothard, Le Luo Guan. BMC Genomics 2016
42
33

A mitochondrial protein compendium elucidates complex I disease biology.
David J Pagliarini, Sarah E Calvo, Betty Chang, Sunil A Sheth, Scott B Vafai, Shao-En Ong, Geoffrey A Walford, Canny Sugiana, Avihu Boneh, William K Chen,[...]. Cell 2008
33

Beef heart cytochrome c oxidase.
S Yoshikawa. Curr Opin Struct Biol 1997
14
33

Metabolic profiling of early-lactation dairy cows using milk mid-infrared spectra.
T D W Luke, S Rochfort, W J Wales, V Bonfatti, L Marett, J E Pryce. J Dairy Sci 2019
26
33

Gene co-expression analysis for functional classification and gene-disease predictions.
Sipko van Dam, Urmo Võsa, Adriaan van der Graaf, Lude Franke, João Pedro de Magalhães. Brief Bioinform 2018
271
33


Differential expression of genes in milk of dairy cattle during lactation.
Jie Yang, Jicai Jiang, Xuan Liu, Haifei Wang, Gang Guo, Qin Zhang, Li Jiang. Anim Genet 2016
27
33


Weighted gene co-expression network analysis of expression data of monozygotic twins identifies specific modules and hub genes related to BMI.
Weijing Wang, Wenjie Jiang, Lin Hou, Haiping Duan, Yili Wu, Chunsheng Xu, Qihua Tan, Shuxia Li, Dongfeng Zhang. BMC Genomics 2017
19
33



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.