A citation-based method for searching scientific literature

Abhik K Banerjee, Mario R Blanco, Emily A Bruce, Drew D Honson, Linlin M Chen, Amy Chow, Prashant Bhat, Noah Ollikainen, Sofia A Quinodoz, Colin Loney, Jasmine Thai, Zachary D Miller, Aaron E Lin, Madaline M Schmidt, Douglas G Stewart, Daniel Goldfarb, Giuditta De Lorenzo, Suzannah J Rihn, Rebecca M Voorhees, Jason W Botten, Devdoot Majumdar, Mitchell Guttman. Cell 2020
Times Cited: 168







List of co-cited articles
1143 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19.
Daniel Blanco-Melo, Benjamin E Nilsson-Payant, Wen-Chun Liu, Skyler Uhl, Daisy Hoagland, Rasmus Møller, Tristan X Jordan, Kohei Oishi, Maryline Panis, David Sachs,[...]. Cell 2020
41

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.
David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney,[...]. Nature 2020
40

Structural basis for translational shutdown and immune evasion by the Nsp1 protein of SARS-CoV-2.
Matthias Thoms, Robert Buschauer, Michael Ameismeier, Lennart Koepke, Timo Denk, Maximilian Hirschenberger, Hanna Kratzat, Manuel Hayn, Timur Mackens-Kiani, Jingdong Cheng,[...]. Science 2020
310
38

SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation.
Katharina Schubert, Evangelos D Karousis, Ahmad Jomaa, Alain Scaiola, Blanca Echeverria, Lukas-Adrian Gurzeler, Marc Leibundgut, Volker Thiel, Oliver Mühlemann, Nenad Ban. Nat Struct Mol Biol 2020
191
34

Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients.
Jérôme Hadjadj, Nader Yatim, Laura Barnabei, Aurélien Corneau, Jeremy Boussier, Nikaïa Smith, Hélène Péré, Bruno Charbit, Vincent Bondet, Camille Chenevier-Gobeaux,[...]. Science 2020
27

The Architecture of SARS-CoV-2 Transcriptome.
Dongwan Kim, Joo-Yeon Lee, Jeong-Sun Yang, Jun Won Kim, V Narry Kim, Hyeshik Chang. Cell 2020
835
26

Activation and evasion of type I interferon responses by SARS-CoV-2.
Xiaobo Lei, Xiaojing Dong, Ruiyi Ma, Wenjing Wang, Xia Xiao, Zhongqin Tian, Conghui Wang, Ying Wang, Li Li, Lili Ren,[...]. Nat Commun 2020
386
26

Evasion of Type I Interferon by SARS-CoV-2.
Hongjie Xia, Zengguo Cao, Xuping Xie, Xianwen Zhang, John Yun-Chung Chen, Hualei Wang, Vineet D Menachery, Ricardo Rajsbaum, Pei-Yong Shi. Cell Rep 2020
299
25

SARS-CoV-2 ORF3b Is a Potent Interferon Antagonist Whose Activity Is Increased by a Naturally Occurring Elongation Variant.
Yoriyuki Konno, Izumi Kimura, Keiya Uriu, Masaya Fukushi, Takashi Irie, Yoshio Koyanagi, Daniel Sauter, Robert J Gifford, So Nakagawa, Kei Sato. Cell Rep 2020
199
21

Autoantibodies against type I IFNs in patients with life-threatening COVID-19.
Paul Bastard, Lindsey B Rosen, Qian Zhang, Eleftherios Michailidis, Hans-Heinrich Hoffmann, Yu Zhang, Karim Dorgham, Quentin Philippot, Jérémie Rosain, Vivien Béziat,[...]. Science 2020
21

A pneumonia outbreak associated with a new coronavirus of probable bat origin.
Peng Zhou, Xing-Lou Yang, Xian-Guang Wang, Ben Hu, Lei Zhang, Wei Zhang, Hao-Rui Si, Yan Zhu, Bei Li, Chao-Lin Huang,[...]. Nature 2020
21

SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor.
Markus Hoffmann, Hannah Kleine-Weber, Simon Schroeder, Nadine Krüger, Tanja Herrler, Sandra Erichsen, Tobias S Schiergens, Georg Herrler, Nai-Huei Wu, Andreas Nitsche,[...]. Cell 2020
20

Inborn errors of type I IFN immunity in patients with life-threatening COVID-19.
Qian Zhang, Paul Bastard, Zhiyong Liu, Jérémie Le Pen, Marcela Moncada-Velez, Jie Chen, Masato Ogishi, Ira K D Sabli, Stephanie Hodeib, Cecilia Korol,[...]. Science 2020
947
19

Coronavirus biology and replication: implications for SARS-CoV-2.
Philip V'kovski, Annika Kratzel, Silvio Steiner, Hanspeter Stalder, Volker Thiel. Nat Rev Microbiol 2021
676
18

Interplay between SARS-CoV-2 and the type I interferon response.
Margarida Sa Ribero, Nolwenn Jouvenet, Marlène Dreux, Sébastien Nisole. PLoS Pathog 2020
221
17

A new coronavirus associated with human respiratory disease in China.
Fan Wu, Su Zhao, Bin Yu, Yan-Mei Chen, Wen Wang, Zhi-Gang Song, Yi Hu, Zhao-Wu Tao, Jun-Hua Tian, Yuan-Yuan Pei,[...]. Nature 2020
17

SARS coronavirus nsp1 protein induces template-dependent endonucleolytic cleavage of mRNAs: viral mRNAs are resistant to nsp1-induced RNA cleavage.
Cheng Huang, Kumari G Lokugamage, Janet M Rozovics, Krishna Narayanan, Bert L Semler, Shinji Makino. PLoS Pathog 2011
195
16

Proteomics of SARS-CoV-2-infected host cells reveals therapy targets.
Denisa Bojkova, Kevin Klann, Benjamin Koch, Marek Widera, David Krause, Sandra Ciesek, Jindrich Cinatl, Christian Münch. Nature 2020
439
16

Severe acute respiratory syndrome coronavirus nsp1 suppresses host gene expression, including that of type I interferon, in infected cells.
Krishna Narayanan, Cheng Huang, Kumari Lokugamage, Wataru Kamitani, Tetsuro Ikegami, Chien-Te K Tseng, Shinji Makino. J Virol 2008
260
16

Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China.
Chaolin Huang, Yeming Wang, Xingwang Li, Lili Ren, Jianping Zhao, Yi Hu, Li Zhang, Guohui Fan, Jiuyang Xu, Xiaoying Gu,[...]. Lancet 2020
16

SARS-CoV-2 Orf6 hijacks Nup98 to block STAT nuclear import and antagonize interferon signaling.
Lisa Miorin, Thomas Kehrer, Maria Teresa Sanchez-Aparicio, Ke Zhang, Phillip Cohen, Roosheel S Patel, Anastasija Cupic, Tadashi Makio, Menghan Mei, Elena Moreno,[...]. Proc Natl Acad Sci U S A 2020
183
15

Comparative host-coronavirus protein interaction networks reveal pan-viral disease mechanisms.
David E Gordon, Joseph Hiatt, Mehdi Bouhaddou, Veronica V Rezelj, Svenja Ulferts, Hannes Braberg, Alexander S Jureka, Kirsten Obernier, Jeffrey Z Guo, Jyoti Batra,[...]. Science 2020
250
15

SARS-CoV-2 nsp13, nsp14, nsp15 and orf6 function as potent interferon antagonists.
Chun-Kit Yuen, Joy-Yan Lam, Wan-Man Wong, Long-Fung Mak, Xiaohui Wang, Hin Chu, Jian-Piao Cai, Dong-Yan Jin, Kelvin Kai-Wang To, Jasper Fuk-Woo Chan,[...]. Emerg Microbes Infect 2020
210
15

Nsp1 protein of SARS-CoV-2 disrupts the mRNA export machinery to inhibit host gene expression.
Ke Zhang, Lisa Miorin, Tadashi Makio, Ishmael Dehghan, Shengyan Gao, Yihu Xie, Hualin Zhong, Matthew Esparza, Thomas Kehrer, Anil Kumar,[...]. Sci Adv 2021
59
25

The viral protein NSP1 acts as a ribosome gatekeeper for shutting down host translation and fostering SARS-CoV-2 translation.
Antonin Tidu, Aurelie Janvier, Laure Schaeffer, Piotr Sosnowski, Lauriane Kuhn, Philippe Hammann, Eric Westhof, Gilbert Eriani, Franck Martin. RNA 2020
45
31

The coding capacity of SARS-CoV-2.
Yaara Finkel, Orel Mizrahi, Aharon Nachshon, Shira Weingarten-Gabbay, David Morgenstern, Yfat Yahalom-Ronen, Hadas Tamir, Hagit Achdout, Dana Stein, Ofir Israeli,[...]. Nature 2021
174
14

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
13

A molecular pore spans the double membrane of the coronavirus replication organelle.
Georg Wolff, Ronald W A L Limpens, Jessika C Zevenhoven-Dobbe, Ulrike Laugks, Shawn Zheng, Anja W M de Jong, Roman I Koning, David A Agard, Kay Grünewald, Abraham J Koster,[...]. Science 2020
161
13

Longitudinal analyses reveal immunological misfiring in severe COVID-19.
Carolina Lucas, Patrick Wong, Jon Klein, Tiago B R Castro, Julio Silva, Maria Sundaram, Mallory K Ellingson, Tianyang Mao, Ji Eun Oh, Benjamin Israelow,[...]. Nature 2020
810
13

SARS-CoV-2 uses a multipronged strategy to impede host protein synthesis.
Yaara Finkel, Avi Gluck, Aharon Nachshon, Roni Winkler, Tal Fisher, Batsheva Rozman, Orel Mizrahi, Yoav Lubelsky, Binyamin Zuckerman, Boris Slobodin,[...]. Nature 2021
49
24


Origin and evolution of pathogenic coronaviruses.
Jie Cui, Fang Li, Zheng-Li Shi. Nat Rev Microbiol 2019
12

Severe acute respiratory syndrome coronavirus nsp1 protein suppresses host gene expression by promoting host mRNA degradation.
Wataru Kamitani, Krishna Narayanan, Cheng Huang, Kumari Lokugamage, Tetsuro Ikegami, Naoto Ito, Hideyuki Kubo, Shinji Makino. Proc Natl Acad Sci U S A 2006
265
12

A Novel Coronavirus from Patients with Pneumonia in China, 2019.
Na Zhu, Dingyu Zhang, Wenling Wang, Xingwang Li, Bo Yang, Jingdong Song, Xiang Zhao, Baoying Huang, Weifeng Shi, Roujian Lu,[...]. N Engl J Med 2020
12

Functional screen reveals SARS coronavirus nonstructural protein nsp14 as a novel cap N7 methyltransferase.
Yu Chen, Hui Cai, Ji'an Pan, Nian Xiang, Po Tien, Tero Ahola, Deyin Guo. Proc Natl Acad Sci U S A 2009
238
12

Dynamic competition between SARS-CoV-2 NSP1 and mRNA on the human ribosome inhibits translation initiation.
Christopher P Lapointe, Rosslyn Grosely, Alex G Johnson, Jinfan Wang, Israel S Fernández, Joseph D Puglisi. Proc Natl Acad Sci U S A 2021
46
23

A two-pronged strategy to suppress host protein synthesis by SARS coronavirus Nsp1 protein.
Wataru Kamitani, Cheng Huang, Krishna Narayanan, Kumari G Lokugamage, Shinji Makino. Nat Struct Mol Biol 2009
206
11

Type I and Type III Interferons Restrict SARS-CoV-2 Infection of Human Airway Epithelial Cultures.
Abigail Vanderheiden, Philipp Ralfs, Tatiana Chirkova, Amit A Upadhyay, Matthew G Zimmerman, Shamika Bedoya, Hadj Aoued, Gregory M Tharp, Kathryn L Pellegrini, Candela Manfredi,[...]. J Virol 2020
136
11

The Global Phosphorylation Landscape of SARS-CoV-2 Infection.
Mehdi Bouhaddou, Danish Memon, Bjoern Meyer, Kris M White, Veronica V Rezelj, Miguel Correa Marrero, Benjamin J Polacco, James E Melnyk, Svenja Ulferts, Robyn M Kaake,[...]. Cell 2020
381
11

Continuous and Discontinuous RNA Synthesis in Coronaviruses.
Isabel Sola, Fernando Almazán, Sonia Zúñiga, Luis Enjuanes. Annu Rev Virol 2015
287
11

Translational shutdown and evasion of the innate immune response by SARS-CoV-2 NSP14 protein.
Jack Chun-Chieh Hsu, Maudry Laurent-Rolle, Joanna B Pawlak, Craig B Wilen, Peter Cresswell. Proc Natl Acad Sci U S A 2021
37
29

SARS-CoV-2 Orf9b suppresses type I interferon responses by targeting TOM70.
He-Wei Jiang, Hai-Nan Zhang, Qing-Feng Meng, Jia Xie, Yang Li, Hong Chen, Yun-Xiao Zheng, Xue-Ning Wang, Huan Qi, Jing Zhang,[...]. Cell Mol Immunol 2020
136
10

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) membrane (M) protein inhibits type I and III interferon production by targeting RIG-I/MDA-5 signaling.
Yi Zheng, Meng-Wei Zhuang, Lulu Han, Jing Zhang, Mei-Ling Nan, Peng Zhan, Dongwei Kang, Xinyong Liu, Chengjiang Gao, Pei-Hui Wang. Signal Transduct Target Ther 2020
104
10

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
10

Middle East Respiratory Syndrome Coronavirus nsp1 Inhibits Host Gene Expression by Selectively Targeting mRNAs Transcribed in the Nucleus while Sparing mRNAs of Cytoplasmic Origin.
Kumari G Lokugamage, Krishna Narayanan, Keisuke Nakagawa, Kaori Terasaki, Sydney I Ramirez, Chien-Te K Tseng, Shinji Makino. J Virol 2015
91
10

Mouse model of SARS-CoV-2 reveals inflammatory role of type I interferon signaling.
Benjamin Israelow, Eric Song, Tianyang Mao, Peiwen Lu, Amit Meir, Feimei Liu, Mia Madel Alfajaro, Jin Wei, Huiping Dong, Robert J Homer,[...]. J Exp Med 2020
202
10

The molecular virology of coronaviruses.
Ella Hartenian, Divya Nandakumar, Azra Lari, Michael Ly, Jessica M Tucker, Britt A Glaunsinger. J Biol Chem 2020
137
10

High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling.
Nerea Irigoyen, Andrew E Firth, Joshua D Jones, Betty Y-W Chung, Stuart G Siddell, Ian Brierley. PLoS Pathog 2016
111
9




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.