A citation-based method for searching scientific literature

Flavia Angela Maria Maggiolini, Ashley D Sanders, Colin James Shew, Arvis Sulovari, Yafei Mao, Marta Puig, Claudia Rita Catacchio, Maria Dellino, Donato Palmisano, Ludovica Mercuri, Miriana Bitonto, David Porubský, Mario Cáceres, Evan E Eichler, Mario Ventura, Megan Y Dennis, Jan O Korbel, Francesca Antonacci. Genome Res 2020
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


High-throughput single-cell DNA sequencing of acute myeloid leukemia tumors with droplet microfluidics.
Maurizio Pellegrino, Adam Sciambi, Sebastian Treusch, Robert Durruthy-Durruthy, Kaustubh Gokhale, Jose Jacob, Tina X Chen, Jennifer A Geis, William Oldham, Jairo Matthews,[...]. Genome Res 2018
64
100

Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
580
100

Peripheral CD8+ T cell characteristics associated with durable responses to immune checkpoint blockade in patients with metastatic melanoma.
Benjamin P Fairfax, Chelsea A Taylor, Robert A Watson, Isar Nassiri, Sara Danielli, Hai Fang, Elise A Mahé, Rosalin Cooper, Victoria Woodcock, Zoe Traill,[...]. Nat Med 2020
47
100

Single-cell triple omics sequencing reveals genetic, epigenetic, and transcriptomic heterogeneity in hepatocellular carcinomas.
Yu Hou, Huahu Guo, Chen Cao, Xianlong Li, Boqiang Hu, Ping Zhu, Xinglong Wu, Lu Wen, Fuchou Tang, Yanyi Huang,[...]. Cell Res 2016
233
100

Multiclonal Invasion in Breast Tumors Identified by Topographic Single Cell Sequencing.
Anna K Casasent, Aislyn Schalck, Ruli Gao, Emi Sei, Annalyssa Long, William Pangburn, Tod Casasent, Funda Meric-Bernstam, Mary E Edgerton, Nicholas E Navin. Cell 2018
131
100

Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm.
Yong Hou, Luting Song, Ping Zhu, Bo Zhang, Ye Tao, Xun Xu, Fuqiang Li, Kui Wu, Jie Liang, Di Shao,[...]. Cell 2012
349
100

Single-cell exome sequencing reveals single-nucleotide mutation characteristics of a kidney tumor.
Xun Xu, Yong Hou, Xuyang Yin, Li Bao, Aifa Tang, Luting Song, Fuqiang Li, Shirley Tsang, Kui Wu, Hanjie Wu,[...]. Cell 2012
413
100

Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq.
Andrew S Venteicher, Itay Tirosh, Christine Hebert, Keren Yizhak, Cyril Neftel, Mariella G Filbin, Volker Hovestadt, Leah E Escalante, McKenzie L Shaw, Christopher Rodman,[...]. Science 2017
293
100


Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry.
Fan Zhang, Kevin Wei, Kamil Slowikowski, Chamith Y Fonseka, Deepak A Rao, Stephen Kelly, Susan M Goodman, Darren Tabechian, Laura B Hughes, Karen Salomon-Escoto,[...]. Nat Immunol 2019
200
100

High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer.
Kevin Grosselin, Adeline Durand, Justine Marsolier, Adeline Poitou, Elisabetta Marangoni, Fariba Nemati, Ahmed Dahmani, Sonia Lameiras, Fabien Reyal, Olivia Frenoy,[...]. Nat Genet 2019
97
100

In situ sequencing for RNA analysis in preserved tissue and cells.
Rongqin Ke, Marco Mignardi, Alexandra Pacureanu, Jessica Svedlund, Johan Botling, Carolina Wählby, Mats Nilsson. Nat Methods 2013
270
100

Single-cell ChIP-seq reveals cell subpopulations defined by chromatin state.
Assaf Rotem, Oren Ram, Noam Shoresh, Ralph A Sperling, Alon Goren, David A Weitz, Bradley E Bernstein. Nat Biotechnol 2015
388
100

Single-cell transcriptomics in cancer: computational challenges and opportunities.
Jean Fan, Kamil Slowikowski, Fan Zhang. Exp Mol Med 2020
13
100

Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types.
Diego Adhemar Jaitin, Ephraim Kenigsberg, Hadas Keren-Shaul, Naama Elefant, Franziska Paul, Irina Zaretsky, Alexander Mildner, Nadav Cohen, Steffen Jung, Amos Tanay,[...]. Science 2014
833
100

Single-cell analysis reveals new evolutionary complexity in uveal melanoma.
Michael A Durante, Daniel A Rodriguez, Stefan Kurtenbach, Jeffim N Kuznetsov, Margaret I Sanchez, Christina L Decatur, Helen Snyder, Lynn G Feun, Alan S Livingstone, J William Harbour. Nat Commun 2020
48
100

G&T-seq: parallel sequencing of single-cell genomes and transcriptomes.
Iain C Macaulay, Wilfried Haerty, Parveen Kumar, Yang I Li, Tim Xiaoming Hu, Mabel J Teng, Mubeen Goolam, Nathalie Saurat, Paul Coupland, Lesley M Shirley,[...]. Nat Methods 2015
316
100

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
528
100

RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia.
Elli Papaemmanuil, Inmaculada Rapado, Yilong Li, Nicola E Potter, David C Wedge, Jose Tubio, Ludmil B Alexandrov, Peter Van Loo, Susanna L Cooke, John Marshall,[...]. Nat Genet 2014
195
100

RNAscope: a novel in situ RNA analysis platform for formalin-fixed, paraffin-embedded tissues.
Fay Wang, John Flanagan, Nan Su, Li-Chong Wang, Son Bui, Allissa Nielson, Xingyong Wu, Hong-Thuy Vo, Xiao-Jun Ma, Yuling Luo. J Mol Diagn 2012
100

Single-Cell Multiomics: Multiple Measurements from Single Cells.
Iain C Macaulay, Chris P Ponting, Thierry Voet. Trends Genet 2017
205
100

Epigenetic mechanisms in tumorigenesis, tumor cell heterogeneity and drug resistance.
Roel H Wilting, Jan-Hermen Dannenberg. Drug Resist Updat 2012
146
100

Multiplexed quantification of proteins and transcripts in single cells.
Vanessa M Peterson, Kelvin Xi Zhang, Namit Kumar, Jerelyn Wong, Lixia Li, Douglas C Wilson, Renee Moore, Terrill K McClanahan, Svetlana Sadekova, Joel A Klappenbach. Nat Biotechnol 2017
258
100

Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling.
Caleb A Lareau, Leif S Ludwig, Christoph Muus, Satyen H Gohil, Tongtong Zhao, Zachary Chiang, Karin Pelka, Jeffrey M Verboon, Wendy Luo, Elena Christian,[...]. Nat Biotechnol 2021
11
100

Single-cell RNA-seq enables comprehensive tumour and immune cell profiling in primary breast cancer.
Woosung Chung, Hye Hyeon Eum, Hae-Ock Lee, Kyung-Min Lee, Han-Byoel Lee, Kyu-Tae Kim, Han Suk Ryu, Sangmin Kim, Jeong Eon Lee, Yeon Hee Park,[...]. Nat Commun 2017
283
100

Genome-wide single-cell analysis of recombination activity and de novo mutation rates in human sperm.
Jianbin Wang, H Christina Fan, Barry Behr, Stephen R Quake. Cell 2012
298
100

An Integrated Gene Expression Landscape Profiling Approach to Identify Lung Tumor Endothelial Cell Heterogeneity and Angiogenic Candidates.
Jermaine Goveia, Katerina Rohlenova, Federico Taverna, Lucas Treps, Lena-Christin Conradi, Andreas Pircher, Vincent Geldhof, Laura P M H de Rooij, Joanna Kalucka, Liliana Sokol,[...]. Cancer Cell 2020
48
100

Targeting DNA methylation.
Jean-Pierre J Issa, Hagop M Kantarjian. Clin Cancer Res 2009
278
100

Single-cell transcriptomes from human kidneys reveal the cellular identity of renal tumors.
Matthew D Young, Thomas J Mitchell, Felipe A Vieira Braga, Maxine G B Tran, Benjamin J Stewart, John R Ferdinand, Grace Collord, Rachel A Botting, Dorin-Mirel Popescu, Kevin W Loudon,[...]. Science 2018
176
100

Epigenetic evolution and lineage histories of chronic lymphocytic leukaemia.
Federico Gaiti, Ronan Chaligne, Hongcang Gu, Ryan M Brand, Steven Kothen-Hill, Rafael C Schulman, Kirill Grigorev, Davide Risso, Kyu-Tae Kim, Alessandro Pastore,[...]. Nature 2019
55
100


Landscape and Dynamics of Single Immune Cells in Hepatocellular Carcinoma.
Qiming Zhang, Yao He, Nan Luo, Shashank J Patel, Yanjie Han, Ranran Gao, Madhura Modak, Sebastian Carotta, Christian Haslinger, David Kind,[...]. Cell 2019
145
100

Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia.
Jeffrey M Granja, Sandy Klemm, Lisa M McGinnis, Arwa S Kathiria, Anja Mezger, M Ryan Corces, Benjamin Parks, Eric Gars, Michaela Liedtke, Grace X Y Zheng,[...]. Nat Biotechnol 2019
59
100

Tertiary lymphoid structures improve immunotherapy and survival in melanoma.
Rita Cabrita, Martin Lauss, Adriana Sanna, Marco Donia, Mathilde Skaarup Larsen, Shamik Mitra, Iva Johansson, Bengt Phung, Katja Harbst, Johan Vallon-Christersson,[...]. Nature 2020
244
100

Targeting epigenetic regulators for cancer therapy: mechanisms and advances in clinical trials.
Yuan Cheng, Cai He, Manni Wang, Xuelei Ma, Fei Mo, Shengyong Yang, Junhong Han, Xiawei Wei. Signal Transduct Target Ther 2019
90
100

Automated quantitative RNA in situ hybridization for resolution of equivocal and heterogeneous ERBB2 (HER2) status in invasive breast carcinoma.
Zhen Wang, Bryce P Portier, Aaron M Gruver, Son Bui, Hongwei Wang, Nan Su, Hong-Thuy Vo, Xiao-Jun Ma, Yuling Luo, G Thomas Budd,[...]. J Mol Diagn 2013
45
100

Developmental and oncogenic programs in H3K27M gliomas dissected by single-cell RNA-seq.
Mariella G Filbin, Itay Tirosh, Volker Hovestadt, McKenzie L Shaw, Leah E Escalante, Nathan D Mathewson, Cyril Neftel, Nelli Frank, Kristine Pelton, Christine M Hebert,[...]. Science 2018
166
100

Single-cell genome sequencing: current state of the science.
Charles Gawad, Winston Koh, Stephen R Quake. Nat Rev Genet 2016
530
100

Joint analysis of heterogeneous single-cell RNA-seq dataset collections.
Nikolas Barkas, Viktor Petukhov, Daria Nikolaeva, Yaroslav Lozinsky, Samuel Demharter, Konstantin Khodosevich, Peter V Kharchenko. Nat Methods 2019
52
100

Single-cell analysis of structural variations and complex rearrangements with tri-channel processing.
Ashley D Sanders, Sascha Meiers, Maryam Ghareghani, David Porubsky, Hyobin Jeong, M Alexandra C C van Vliet, Tobias Rausch, Paulina Richter-Pechańska, Joachim B Kunz, Silvia Jenni,[...]. Nat Biotechnol 2020
7
100

Phenotype molding of stromal cells in the lung tumor microenvironment.
Diether Lambrechts, Els Wauters, Bram Boeckx, Sara Aibar, David Nittner, Oliver Burton, Ayse Bassez, Herbert Decaluwé, Andreas Pircher, Kathleen Van den Eynde,[...]. Nat Med 2018
350
100

Whole-exome sequencing of circulating tumor cells provides a window into metastatic prostate cancer.
Jens G Lohr, Viktor A Adalsteinsson, Kristian Cibulskis, Atish D Choudhury, Mara Rosenberg, Peter Cruz-Gordillo, Joshua M Francis, Cheng-Zhong Zhang, Alex K Shalek, Rahul Satija,[...]. Nat Biotechnol 2014
353
100

Stalled developmental programs at the root of pediatric brain tumors.
Selin Jessa, Alexis Blanchet-Cohen, Brian Krug, Maria Vladoiu, Marie Coutelier, Damien Faury, Brice Poreau, Nicolas De Jay, Steven Hébert, Jean Monlong,[...]. Nat Genet 2019
36
100

Expression profiling. Combinatorial labeling of single cells for gene expression cytometry.
H Christina Fan, Glenn K Fu, Stephen P A Fodor. Science 2015
196
100

Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing.
Hongshan Guo, Ping Zhu, Fan Guo, Xianlong Li, Xinglong Wu, Xiaoying Fan, Lu Wen, Fuchou Tang. Nat Protoc 2015
75
100


Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses.
Yonit Lavin, Soma Kobayashi, Andrew Leader, El-Ad David Amir, Naama Elefant, Camille Bigenwald, Romain Remark, Robert Sweeney, Christian D Becker, Jacob H Levine,[...]. Cell 2017
446
100

Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment.
Elham Azizi, Ambrose J Carr, George Plitas, Andrew E Cornish, Catherine Konopacki, Sandhya Prabhakaran, Juozas Nainys, Kenmin Wu, Vaidotas Kiseliovas, Manu Setty,[...]. Cell 2018
428
100

Linking T-cell receptor sequence to functional phenotype at the single-cell level.
Arnold Han, Jacob Glanville, Leo Hansmann, Mark M Davis. Nat Biotechnol 2014
260
100

Single-cell mutational profiling and clonal phylogeny in cancer.
Nicola E Potter, Luca Ermini, Elli Papaemmanuil, Giovanni Cazzaniga, Gowri Vijayaraghavan, Ian Titley, Anthony Ford, Peter Campbell, Lyndal Kearney, Mel Greaves. Genome Res 2013
87
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.