A citation-based method for searching scientific literature

Bingkun Lei, Matías Capella, Sean A Montgomery, Michael Borg, Akihisa Osakabe, Malgorzata Goiser, Abubakar Muhammad, Sigurd Braun, Frédéric Berger. Curr Biol 2021
Times Cited: 2







List of co-cited articles
5 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Compartmentalization of DNA Damage Response between Heterochromatin and Euchromatin Is Mediated by Distinct H2A Histone Variants.
Zdravko J Lorković, Chulmin Park, Malgorzata Goiser, Danhua Jiang, Marie-Therese Kurzbauer, Peter Schlögelhofer, Frédéric Berger. Curr Biol 2017
36
100

Structural basis of instability of the nucleosome containing a testis-specific histone variant, human H3T.
Hiroaki Tachiwana, Wataru Kagawa, Akihisa Osakabe, Koichiro Kawaguchi, Tatsuya Shiga, Yoko Hayashi-Takanaka, Hiroshi Kimura, Hitoshi Kurumizaka. Proc Natl Acad Sci U S A 2010
145
100

Histone H2A variants confer specific properties to nucleosomes and impact on chromatin accessibility.
Akihisa Osakabe, Zdravko J Lorkovic, Wataru Kobayashi, Hiroaki Tachiwana, Ramesh Yelagandula, Hitoshi Kurumizaka, Frédéric Berger. Nucleic Acids Res 2018
27
100

The histone variant H2A.W defines heterochromatin and promotes chromatin condensation in Arabidopsis.
Ramesh Yelagandula, Hume Stroud, Sarah Holec, Keda Zhou, Suhua Feng, Xuehua Zhong, Uma M Muthurajan, Xin Nie, Tomokazu Kawashima, Martin Groth,[...]. Cell 2014
132
100

Expression and purification of recombinant human histones.
Yoshinori Tanaka, Maki Tawaramoto-Sasanuma, Shinichi Kawaguchi, Tsutomu Ohta, Kinya Yoda, Hitoshi Kurumizaka, Shigeyuki Yokoyama. Methods 2004
131
100

Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification.
Zachary Lippman, Bruce May, Cristy Yordan, Tatjana Singer, Rob Martienssen. PLoS Biol 2003
288
50

Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis.
Masaomi Kato, Asuka Miura, Judith Bender, Steven E Jacobsen, Tetsuji Kakutani. Curr Biol 2003
207
50

Lsh regulates LTR retrotransposon repression independently of Dnmt3b function.
Donncha S Dunican, Hazel A Cruickshanks, Masako Suzuki, Colin A Semple, Tracey Davey, Robert J Arceci, John Greally, Ian R Adams, Richard R Meehan. Genome Biol 2013
36
50

Mouse germ line mutations due to retrotransposon insertions.
Liane Gagnier, Victoria P Belancio, Dixie L Mager. Mob DNA 2019
36
50

Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions.
Taiji Kawakatsu, Shao-Shan Carol Huang, Florian Jupe, Eriko Sasaki, Robert J Schmitz, Mark A Urich, Rosa Castanon, Joseph R Nery, Cesar Barragan, Yupeng He,[...]. Cell 2016
259
50

The LSH/DDM1 Homolog MUS-30 Is Required for Genome Stability, but Not for DNA Methylation in Neurospora crassa.
Evelina Y Basenko, Masayuki Kamei, Lexiang Ji, Robert J Schmitz, Zachary A Lewis. PLoS Genet 2016
9
50

Transposable elements as sources of variation in animals and plants.
M G Kidwell, D Lisch. Proc Natl Acad Sci U S A 1997
378
50

Lsh is involved in de novo methylation of DNA.
Heming Zhu, Theresa M Geiman, Sichuan Xi, Qiong Jiang, Anja Schmidtmann, Taiping Chen, En Li, Kathrin Muegge. EMBO J 2006
118
50


Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa.
Toru Sengoku, Osamu Nureki, Akira Nakamura, Satoru Kobayashi, Shigeyuki Yokoyama. Cell 2006
406
50

Dynamic deposition of histone variant H3.3 accompanies developmental remodeling of the Arabidopsis transcriptome.
Heike Wollmann, Sarah Holec, Keith Alden, Neil D Clarke, Pierre-Étienne Jacques, Frédéric Berger. PLoS Genet 2012
82
50

Host-transposon interactions: conflict, cooperation, and cooption.
Rachel L Cosby, Ni-Chen Chang, Cédric Feschotte. Genes Dev 2019
71
50

Release of epigenetic gene silencing by trans-acting mutations in Arabidopsis.
O Mittelsten Scheid, K Afsar, J Paszkowski. Proc Natl Acad Sci U S A 1998
109
50


Near-optimal probabilistic RNA-seq quantification.
Nicolas L Bray, Harold Pimentel, Páll Melsted, Lior Pachter. Nat Biotechnol 2016
50


Loss of the DNA methyltransferase MET1 Induces H3K9 hypermethylation at PcG target genes and redistribution of H3K27 trimethylation to transposons in Arabidopsis thaliana.
Angelique Deleris, Hume Stroud, Yana Bernatavichute, Elizabeth Johnson, Gregor Klein, Daniel Schubert, Steven E Jacobsen. PLoS Genet 2012
91
50

DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing.
Kaifu Chen, Yuanxin Xi, Xuewen Pan, Zhaoyu Li, Klaus Kaestner, Jessica Tyler, Sharon Dent, Xiangwei He, Wei Li. Genome Res 2013
189
50

Fitness cost of LINE-1 (L1) activity in humans.
Stephane Boissinot, Jerel Davis, Ali Entezam, Dimitri Petrov, Anthony V Furano. Proc Natl Acad Sci U S A 2006
90
50

ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex.
Gaku Mizuguchi, Xuetong Shen, Joe Landry, Wei-Hua Wu, Subhojit Sen, Carl Wu. Science 2004
895
50

PIWI-interacting RNAs: small RNAs with big functions.
Deniz M Ozata, Ildar Gainetdinov, Ansgar Zoch, Dónal O'Carroll, Phillip D Zamore. Nat Rev Genet 2019
286
50

Complex heatmaps reveal patterns and correlations in multidimensional genomic data.
Zuguang Gu, Roland Eils, Matthias Schlesner. Bioinformatics 2016
50

The Arabidopsis nucleosome remodeler DDM1 allows DNA methyltransferases to access H1-containing heterochromatin.
Assaf Zemach, M Yvonne Kim, Ping-Hung Hsieh, Devin Coleman-Derr, Leor Eshed-Williams, Ka Thao, Stacey L Harmer, Daniel Zilberman. Cell 2013
532
50

A unified classification system for eukaryotic transposable elements.
Thomas Wicker, François Sabot, Aurélie Hua-Van, Jeffrey L Bennetzen, Pierre Capy, Boulos Chalhoub, Andrew Flavell, Philippe Leroy, Michele Morgante, Olivier Panaud,[...]. Nat Rev Genet 2007
50

DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis.
Wim J J Soppe, Zuzana Jasencakova, Andreas Houben, Tetsuji Kakutani, Armin Meister, Michael S Huang, Steven E Jacobsen, Ingo Schubert, Paul F Fransz. EMBO J 2002
333
50

piRNA-Guided Genome Defense: From Biogenesis to Silencing.
Benjamin Czech, Marzia Munafò, Filippo Ciabrelli, Evelyn L Eastwood, Martin H Fabry, Emma Kneuss, Gregory J Hannon. Annu Rev Genet 2018
127
50

LSH mediates gene repression through macroH2A deposition.
Kai Ni, Jianke Ren, Xiaoping Xu, Yafeng He, Richard Finney, Simon M G Braun, Nathaniel A Hathaway, Gerald R Crabtree, Kathrin Muegge. Nat Commun 2020
9
50


DDM1 (decrease in DNA methylation) genes in rice (Oryza sativa).
Hiromi Higo, Muhammad Tahir, Kazuya Takashima, Asuka Miura, Koichi Watanabe, Akemi Tagiri, Masashi Ugaki, Ryuji Ishikawa, Mitsugu Eiguchi, Nori Kurata,[...]. Mol Genet Genomics 2012
20
50

Mechanistic insights into plant SUVH family H3K9 methyltransferases and their binding to context-biased non-CG DNA methylation.
Xueqin Li, C Jake Harris, Zhenhui Zhong, Wei Chen, Rui Liu, Bei Jia, Zonghua Wang, Sisi Li, Steven E Jacobsen, Jiamu Du. Proc Natl Acad Sci U S A 2018
41
50

Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants.
Sophie Lanciano, Marie-Christine Carpentier, Christel Llauro, Edouard Jobet, Dagmara Robakowska-Hyzorek, Eric Lasserre, Alain Ghesquière, Olivier Panaud, Marie Mirouze. PLoS Genet 2017
49
50



The domesticated transposase ALP2 mediates formation of a novel Polycomb protein complex by direct interaction with MSI1, a core subunit of Polycomb Repressive Complex 2 (PRC2).
Christos N Velanis, Pumi Perera, Bennett Thomson, Erica de Leau, Shih Chieh Liang, Ben Hartwig, Alexander Förderer, Harry Thornton, Pedro Arede, Jiawen Chen,[...]. PLoS Genet 2020
7
50

Transposable Element Domestication As an Adaptation to Evolutionary Conflicts.
Diwash Jangam, Cédric Feschotte, Esther Betrán. Trends Genet 2017
92
50

The genetic makeup of the Drosophila piRNA pathway.
Dominik Handler, Katharina Meixner, Manfred Pizka, Kathrin Lauss, Christopher Schmied, Franz Sebastian Gruber, Julius Brennecke. Mol Cell 2013
146
50


The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs.
Saivageethi Nuthikattu, Andrea D McCue, Kaushik Panda, Dalen Fultz, Christopher DeFraia, Erica N Thomas, R Keith Slotkin. Plant Physiol 2013
170
50

Structural analysis of the hexasome, lacking one histone H2A/H2B dimer from the conventional nucleosome.
Yasuhiro Arimura, Hiroaki Tachiwana, Takashi Oda, Mamoru Sato, Hitoshi Kurumizaka. Biochemistry 2012
63
50

A unified phylogeny-based nomenclature for histone variants.
Paul B Talbert, Kami Ahmad, Geneviève Almouzni, Juan Ausió, Frederic Berger, Prem L Bhalla, William M Bonner, W Zacheus Cande, Brian P Chadwick, Simon W L Chan,[...]. Epigenetics Chromatin 2012
194
50

The piRNA pathway: a fly's perspective on the guardian of the genome.
Kirsten-André Senti, Julius Brennecke. Trends Genet 2010
162
50

Arabidopsis MSI1 connects LHP1 to PRC2 complexes.
Maria Derkacheva, Yvonne Steinbach, Thomas Wildhaber, Iva Mozgová, Walid Mahrez, Paolo Nanni, Sylvain Bischof, Wilhelm Gruissem, Lars Hennig. EMBO J 2013
144
50

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
50

Global regulation of H2A.Z localization by the INO80 chromatin-remodeling enzyme is essential for genome integrity.
Manolis Papamichos-Chronakis, Shinya Watanabe, Oliver J Rando, Craig L Peterson. Cell 2011
262
50

Ten things you should know about transposable elements.
Guillaume Bourque, Kathleen H Burns, Mary Gehring, Vera Gorbunova, Andrei Seluanov, Molly Hammell, Michaël Imbeault, Zsuzsanna Izsvák, Henry L Levin, Todd S Macfarlan,[...]. Genome Biol 2018
246
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.