A citation-based method for searching scientific literature

Zhenghao Duan, Jie Lu. Front Psychiatry 2020
Times Cited: 6







List of co-cited articles
4 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Epigenetic mechanisms of depression.
Eric J Nestler. JAMA Psychiatry 2014
101
33


Epigenetics of the depressed brain: role of histone acetylation and methylation.
HaoSheng Sun, Pamela J Kennedy, Eric J Nestler. Neuropsychopharmacology 2013
229
33

Stress, epigenetics and depression: A systematic review.
Caroline Park, Joshua D Rosenblat, Elisa Brietzke, Zihang Pan, Yena Lee, Bing Cao, Hannah Zuckerman, Anastasia Kalantarova, Roger S McIntyre. Neurosci Biobehav Rev 2019
106
33

Ectopic expression of DNA methyltransferases DNMT3A2 and DNMT3L leads to aberrant hypermethylation and postnatal lethality in mice.
Keisuke Sasaki, Satoshi Hara, Reina Yamakami, Yusuke Sato, Saki Hasegawa, Tomohiro Kono, Kanako Morohaku, Yayoi Obata. Mol Reprod Dev 2019
5
20

Dnmt3a regulates both proliferation and differentiation of mouse neural stem cells.
Zhourui Wu, Kevin Huang, Juehua Yu, Thuc Le, Masakasu Namihira, Yupeng Liu, Jun Zhang, Zhigang Xue, Liming Cheng, Guoping Fan. J Neurosci Res 2012
42
16

The Arp2/3 complex is essential at multiple stages of neural development.
Fu-Sheng Chou, Pei-Shan Wang. Neurogenesis (Austin) 2016
16
16

DNMT3L facilitates DNA methylation partly by maintaining DNMT3A stability in mouse embryonic stem cells.
Nicolas Veland, Yue Lu, Swanand Hardikar, Sally Gaddis, Yang Zeng, Bigang Liu, Marcos R Estecio, Yoko Takata, Kevin Lin, Mary W Tomida,[...]. Nucleic Acids Res 2019
49
16

DNA-Methylation Patterns in Trisomy 21 Using Cells from Monozygotic Twins.
M Reza Sailani, Federico A Santoni, Audrey Letourneau, Christelle Borel, Periklis Makrythanasis, Youssef Hibaoui, Konstantin Popadin, Ximena Bonilla, Michel Guipponi, Corinne Gehrig,[...]. PLoS One 2015
38
16

DNA methylation markers in the postnatal developing rat brain.
Rebecca K Simmons, Sara A Stringfellow, Matthew E Glover, Anjali A Wagle, Sarah M Clinton. Brain Res 2013
36
16

Trans-acting epigenetic effects of chromosomal aneuploidies: lessons from Down syndrome and mouse models.
Catherine Do, Zhuo Xing, Y Eugene Yu, Benjamin Tycko. Epigenomics 2017
32
16

Abnormal DNA methyltransferase expression in mouse germline stem cells results in spermatogenic defects.
Seiji Takashima, Masanori Takehashi, Jiyoung Lee, Shinichiro Chuma, Masaki Okano, Kenichiro Hata, Isao Suetake, Norio Nakatsuji, Hiroyuki Miyoshi, Shoji Tajima,[...]. Biol Reprod 2009
56
16

Transient DNMT3L Expression Reinforces Chromatin Surveillance to Halt Senescence Progression in Mouse Embryonic Fibroblast.
Yoyo Chih-Yun Yu, Tony Zk Hui, Tzu-Hao Kao, Hung-Fu Liao, Chih-Yi Yang, Chia-Chun Hou, Hsin-Ting Hsieh, Jen-Yun Chang, Yi-Tzang Tsai, Marina Pinskaya,[...]. Front Cell Dev Biol 2020
6
16


Dnmt3a-dependent nonpromoter DNA methylation facilitates transcription of neurogenic genes.
Hao Wu, Volkan Coskun, Jifang Tao, Wei Xie, Weihong Ge, Kazuaki Yoshikawa, En Li, Yi Zhang, Yi Eve Sun. Science 2010
431
16

Genomic and functional profiling of human Down syndrome neural progenitors implicates S100B and aquaporin 4 in cell injury.
Giuseppe Esposito, Jaime Imitola, Jie Lu, Daniele De Filippis, Caterina Scuderi, Vijay S Ganesh, Rebecca Folkerth, Jonathan Hecht, Soojung Shin, Teresa Iuvone,[...]. Hum Mol Genet 2008
82
16

Cytoskeletal Associated Filamin A and RhoA Affect Neural Progenitor Specification During Mitosis.
Gewei Lian, Timothy Wong, Jie Lu, Jianjun Hu, Jingping Zhang, Volney Sheen. Cereb Cortex 2019
10
16

Developmental changes and sex differences in DNA methylation and demethylation in hypothalamic regions of the mouse brain.
Carla D Cisternas, Laura R Cortes, Emily C Bruggeman, Bing Yao, Nancy G Forger. Epigenetics 2020
18
16

Dnmt3L antagonizes DNA methylation at bivalent promoters and favors DNA methylation at gene bodies in ESCs.
Francesco Neri, Anna Krepelova, Danny Incarnato, Mara Maldotti, Caterina Parlato, Federico Galvagni, Filomena Matarese, Hendrik G Stunnenberg, Salvatore Oliviero. Cell 2013
116
16

DNMT3B isoforms without catalytic activity stimulate gene body methylation as accessory proteins in somatic cells.
Christopher E Duymich, Jessica Charlet, Xiaojing Yang, Peter A Jones, Gangning Liang. Nat Commun 2016
66
16

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies.
Andrew E Jaffe, Peter Murakami, Hwajin Lee, Jeffrey T Leek, M Daniele Fallin, Andrew P Feinberg, Rafael A Irizarry. Int J Epidemiol 2012
386
16

DNMT3L interacts with transcription factors to target DNMT3L/DNMT3B to specific DNA sequences: role of the DNMT3L/DNMT3B/p65-NFκB complex in the (de-)methylation of TRAF1.
Romain Pacaud, Quentin Sery, Lisa Oliver, François M Vallette, Jörg Tost, Pierre-François Cartron. Biochimie 2014
26
16

DNA methylation changes in Down syndrome derived neural iPSCs uncover co-dysregulation of ZNF and HOX3 families of transcription factors.
Loora Laan, Joakim Klar, Maria Sobol, Jan Hoeber, Mansoureh Shahsavani, Malin Kele, Ambrin Fatima, Muhammad Zakaria, Göran Annerén, Anna Falk,[...]. Clin Epigenetics 2020
10
16

Sirt1 Regulates DNA Methylation and Differentiation Potential of Embryonic Stem Cells by Antagonizing Dnmt3l.
Jinbeom Heo, Jisun Lim, Seungun Lee, Jaeho Jeong, Hyunsook Kang, YongHwan Kim, Jeong Wook Kang, Hwan Yeul Yu, Eui Man Jeong, Kyunggon Kim,[...]. Cell Rep 2017
53
16

GANP suppresses the arginine methyltransferase PRMT5 regulating IL-4-mediated STAT6-signaling to IgE production in B cells.
Hideya Igarashi, Kazuhiko Kuwahara, Mikoto Yoshida, Yan Xing, Kazuhiko Maeda, Koichi Nakajima, Nobuo Sakaguchi. Mol Immunol 2009
16
16

DNMT3L stimulates the DNA methylation activity of Dnmt3a and Dnmt3b through a direct interaction.
Isao Suetake, Fuminori Shinozaki, Junichi Miyagawa, Hideyuki Takeshima, Shoji Tajima. J Biol Chem 2004
293
16

Trans effects of chromosome aneuploidies on DNA methylation patterns in human Down syndrome and mouse models.
Maite Mendioroz, Catherine Do, Xiaoling Jiang, Chunhong Liu, Huferesh K Darbary, Charles F Lang, John Lin, Anna Thomas, Sayeda Abu-Amero, Philip Stanier,[...]. Genome Biol 2015
47
16

Dnmt1 and Dnmt3a maintain DNA methylation and regulate synaptic function in adult forebrain neurons.
Jian Feng, Yu Zhou, Susan L Campbell, Thuc Le, En Li, J David Sweatt, Alcino J Silva, Guoping Fan. Nat Neurosci 2010
661
16

Accelerated epigenetic aging in Down syndrome.
Steve Horvath, Paolo Garagnani, Maria Giulia Bacalini, Chiara Pirazzini, Stefano Salvioli, Davide Gentilini, Anna Maria Di Blasio, Cristina Giuliani, Spencer Tung, Harry V Vinters,[...]. Aging Cell 2015
269
16

Methyltransferase SETD2-Mediated Methylation of STAT1 Is Critical for Interferon Antiviral Activity.
Kun Chen, Juan Liu, Shuxun Liu, Meng Xia, Xiaomin Zhang, Dan Han, Yingming Jiang, Chunmei Wang, Xuetao Cao. Cell 2017
136
16

Structural basis for DNMT3A-mediated de novo DNA methylation.
Zhi-Min Zhang, Rui Lu, Pengcheng Wang, Yang Yu, Dongliang Chen, Linfeng Gao, Shuo Liu, Debin Ji, Scott B Rothbart, Yinsheng Wang,[...]. Nature 2018
113
16

Global hypermethylation in fetal cortex of Down syndrome due to DNMT3L overexpression.
Jie Lu, Monika Mccarter, Gewei Lian, Giuseppe Esposito, Elena Capoccia, Laurent C Delli-Bovi, Jonathan Hecht, Volney Sheen. Hum Mol Genet 2016
36
16

Dnmt3L is a transcriptional repressor that recruits histone deacetylase.
Rachel Deplus, Carmen Brenner, Wendy A Burgers, Pascale Putmans, Tony Kouzarides, Yvan de Launoit, François Fuks. Nucleic Acids Res 2002
131
16

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.
Da Wei Huang, Brad T Sherman, Richard A Lempicki. Nat Protoc 2009
16

Whole genome bisulfite sequencing of Down syndrome brain reveals regional DNA hypermethylation and novel disorder insights.
Benjamin I Laufer, Hyeyeon Hwang, Annie Vogel Ciernia, Charles E Mordaunt, Janine M LaSalle. Epigenetics 2019
19
16

Genetic and epigenetic pathways in Down syndrome: Insights to the brain and immune system from humans and mouse models.
Y Eugene Yu, Zhuo Xing, Catherine Do, Annie Pao, Eun Joon Lee, Sharon Krinsky-McHale, Wayne Silverman, Nicole Schupf, Benjamin Tycko. Prog Brain Res 2020
7
16

Dnmt3L and the establishment of maternal genomic imprints.
D Bourc'his, G L Xu, C S Lin, B Bollman, T H Bestor. Science 2001
925
16

Potent Targeting of the STAT3 Protein in Brain Cancer Stem Cells: A Promising Route for Treating Glioblastoma.
Sina Haftchenary, H Artee Luchman, Andriana O Jouk, Anthony J Veloso, Brent D G Page, Xin Ran Cheng, Sean S Dawson, Natalie Grinshtein, Vijay M Shahani, Kagan Kerman,[...]. ACS Med Chem Lett 2013
81
16

The complex STATes of astrocyte reactivity: How are they controlled by the JAK-STAT3 pathway?
Kelly Ceyzériat, Laurene Abjean, María-Angeles Carrillo-de Sauvage, Lucile Ben Haim, Carole Escartin. Neuroscience 2016
73
16

Structure of Dnmt3a bound to Dnmt3L suggests a model for de novo DNA methylation.
Da Jia, Renata Z Jurkowska, Xing Zhang, Albert Jeltsch, Xiaodong Cheng. Nature 2007
535
16

Epigenetic engineering of yeast reveals dynamic molecular adaptation to methylation stress and genetic modulators of specific DNMT3 family members.
Alex I Finnegan, Somang Kim, Hu Jin, Michael Gapinske, Wendy S Woods, Pablo Perez-Pinera, Jun S Song. Nucleic Acids Res 2020
10
16

Epigenetic dysregulation in the developing Down syndrome cortex.
Nady El Hajj, Marcus Dittrich, Julia Böck, Theo F J Kraus, Indrajit Nanda, Tobias Müller, Larissa Seidmann, Tim Tralau, Danuta Galetzka, Eberhard Schneider,[...]. Epigenetics 2016
49
16


The GABAergic Hypothesis for Cognitive Disabilities in Down Syndrome.
Andrea Contestabile, Salvatore Magara, Laura Cancedda. Front Cell Neurosci 2017
57
16

OLIG2 over-expression impairs proliferation of human Down syndrome neural progenitors.
Jie Lu, Gewei Lian, Hui Zhou, Giuseppe Esposito, Luca Steardo, Laurent C Delli-Bovi, Jonathan L Hecht, Q Richard Lu, Volney Sheen. Hum Mol Genet 2012
34
16

DNMT3L enables accumulation and inheritance of epimutations in transgenic Drosophila.
Amitava Basu, Archana Tomar, Vasanthi Dasari, Rakesh Kumar Mishra, Sanjeev Khosla. Sci Rep 2016
2
50

Ezh2-dCas9 and KRAB-dCas9 enable engineering of epigenetic memory in a context-dependent manner.
Henriette O'Geen, Sofie L Bates, Sakereh S Carter, Karly A Nisson, Julian Halmai, Kyle D Fink, Suhn K Rhie, Peggy J Farnham, David J Segal. Epigenetics Chromatin 2019
49
16

The DNA methyltransferase-like protein DNMT3L stimulates de novo methylation by Dnmt3a.
Frederic Chedin, Michael R Lieber, Chih-Lin Hsieh. Proc Natl Acad Sci U S A 2002
339
16

The Human Transcription Factors.
Samuel A Lambert, Arttu Jolma, Laura F Campitelli, Pratyush K Das, Yimeng Yin, Mihai Albu, Xiaoting Chen, Jussi Taipale, Timothy R Hughes, Matthew T Weirauch. Cell 2018
750
16

DNA methylation controls the timing of astrogliogenesis through regulation of JAK-STAT signaling.
Guoping Fan, Keri Martinowich, Mark H Chin, Fei He, Shaun D Fouse, Leah Hutnick, Daisuke Hattori, Weihong Ge, Yin Shen, Hao Wu,[...]. Development 2005
293
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.