A citation-based method for searching scientific literature

Shan Jiang, Johan Bourghardt Fagman, Changyan Chen, Simon Alberti, Beidong Liu. Elife 2020
Times Cited: 6







List of co-cited articles
39 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Cancer-Specific Retargeting of BAF Complexes by a Prion-like Domain.
Gaylor Boulay, Gabriel J Sandoval, Nicolo Riggi, Sowmya Iyer, Rémi Buisson, Beverly Naigles, Mary E Awad, Shruthi Rengarajan, Angela Volorio, Matthew J McBride,[...]. Cell 2017
146
66

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.
Adam G Larson, Daniel Elnatan, Madeline M Keenen, Michael J Trnka, Jonathan B Johnston, Alma L Burlingame, David A Agard, Sy Redding, Geeta J Narlikar. Nature 2017
619
50

Liquid phase condensation in cell physiology and disease.
Yongdae Shin, Clifford P Brangwynne. Science 2017
972
50

Phase separation of YAP reorganizes genome topology for long-term YAP target gene expression.
Danfeng Cai, Daniel Feliciano, Peng Dong, Eduardo Flores, Martin Gruebele, Natalie Porat-Shliom, Shahar Sukenik, Zhe Liu, Jennifer Lippincott-Schwartz. Nat Cell Biol 2019
64
50

Liquid-liquid phase separation in biology.
Anthony A Hyman, Christoph A Weber, Frank Jülicher. Annu Rev Cell Dev Biol 2014
937
50

Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization.
Amandine Molliex, Jamshid Temirov, Jihun Lee, Maura Coughlin, Anderson P Kanagaraj, Hong Joo Kim, Tanja Mittag, J Paul Taylor. Cell 2015
984
50

Cancer Mutations of the Tumor Suppressor SPOP Disrupt the Formation of Active, Phase-Separated Compartments.
Jill J Bouchard, Joel H Otero, Daniel C Scott, Elzbieta Szulc, Erik W Martin, Nafiseh Sabri, Daniele Granata, Melissa R Marzahn, Kresten Lindorff-Larsen, Xavier Salvatella,[...]. Mol Cell 2018
99
50

Coactivator condensation at super-enhancers links phase separation and gene control.
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
632
50

A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.
Avinash Patel, Hyun O Lee, Louise Jawerth, Shovamayee Maharana, Marcus Jahnel, Marco Y Hein, Stoyno Stoynov, Julia Mahamid, Shambaditya Saha, Titus M Franzmann,[...]. Cell 2015
989
50

Protein Phase Separation: A New Phase in Cell Biology.
Steven Boeynaems, Simon Alberti, Nicolas L Fawzi, Tanja Mittag, Magdalini Polymenidou, Frederic Rousseau, Joost Schymkowitz, James Shorter, Benjamin Wolozin, Ludo Van Den Bosch,[...]. Trends Cell Biol 2018
568
50

Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
33

Nuclear condensates of the Polycomb protein chromobox 2 (CBX2) assemble through phase separation.
Roubina Tatavosian, Samantha Kent, Kyle Brown, Tingting Yao, Huy Nguyen Duc, Thao Ngoc Huynh, Chao Yu Zhen, Brian Ma, Haobin Wang, Xiaojun Ren. J Biol Chem 2019
113
33

Imaging dynamic and selective low-complexity domain interactions that control gene transcription.
Shasha Chong, Claire Dugast-Darzacq, Zhe Liu, Peng Dong, Gina M Dailey, Claudia Cattoglio, Alec Heckert, Sambashiva Banala, Luke Lavis, Xavier Darzacq,[...]. Science 2018
294
33

Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.
Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall'Agnese, Eliot L Coffey, Alicia V Zamudio, Charles H Li, Krishna Shrinivas, John C Manteiga, Nancy M Hannett,[...]. Cell 2018
408
33

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates.
Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I Cisse. Science 2018
386
33

Organization of Chromatin by Intrinsic and Regulated Phase Separation.
Bryan A Gibson, Lynda K Doolittle, Maximillian W G Schneider, Liv E Jensen, Nathan Gamarra, Lisa Henry, Daniel W Gerlich, Sy Redding, Michael K Rosen. Cell 2019
224
33

Coexisting Liquid Phases Underlie Nucleolar Subcompartments.
Marina Feric, Nilesh Vaidya, Tyler S Harmon, Diana M Mitrea, Lian Zhu, Tiffany M Richardson, Richard W Kriwacki, Rohit V Pappu, Clifford P Brangwynne. Cell 2016
630
33

Partitioning of cancer therapeutics in nuclear condensates.
Isaac A Klein, Ann Boija, Lena K Afeyan, Susana Wilson Hawken, Mengyang Fan, Alessandra Dall'Agnese, Ozgur Oksuz, Jonathan E Henninger, Krishna Shrinivas, Benjamin R Sabari,[...]. Science 2020
57
33

Phase separation drives heterochromatin domain formation.
Amy R Strom, Alexander V Emelyanov, Mustafa Mir, Dmitry V Fyodorov, Xavier Darzacq, Gary H Karpen. Nature 2017
662
33

Reversible compartmentalization of de novo purine biosynthetic complexes in living cells.
Songon An, Ravindra Kumar, Erin D Sheets, Stephen J Benkovic. Science 2008
290
33

A new class of disordered elements controls DNA replication through initiator self-assembly.
Matthew W Parker, Maren Bell, Mustafa Mir, Jonchee A Kao, Xavier Darzacq, Michael R Botchan, James M Berger. Elife 2019
35
33

Nuclear body phase separation drives telomere clustering in ALT cancer cells.
Huaiying Zhang, Rongwei Zhao, Jason Tones, Michel Liu, Robert L Dilley, David M Chenoweth, Roger A Greenberg, Michael A Lampson. Mol Biol Cell 2020
26
33

Molecular structure in biomolecular condensates.
Ivan Peran, Tanja Mittag. Curr Opin Struct Biol 2020
29
33

Liquid demixing of intrinsically disordered proteins is seeded by poly(ADP-ribose).
Matthias Altmeyer, Kai J Neelsen, Federico Teloni, Irina Pozdnyakova, Stefania Pellegrino, Merete Grøfte, Maj-Britt Druedahl Rask, Werner Streicher, Stephanie Jungmichel, Michael Lund Nielsen,[...]. Nat Commun 2015
256
33

Phase separation of Polycomb-repressive complex 1 is governed by a charged disordered region of CBX2.
Aaron J Plys, Christopher P Davis, Jongmin Kim, Gizem Rizki, Madeline M Keenen, Sharon K Marr, Robert E Kingston. Genes Dev 2019
106
33

Pol II phosphorylation regulates a switch between transcriptional and splicing condensates.
Yang Eric Guo, John C Manteiga, Jonathan E Henninger, Benjamin R Sabari, Alessandra Dall'Agnese, Nancy M Hannett, Jan-Hendrik Spille, Lena K Afeyan, Alicia V Zamudio, Krishna Shrinivas,[...]. Nature 2019
157
33

Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions.
Jeong-Mo Choi, Alex S Holehouse, Rohit V Pappu. Annu Rev Biophys 2020
109
33

Biomolecular Condensates in the Nucleus.
Benjamin R Sabari, Alessandra Dall'Agnese, Richard A Young. Trends Biochem Sci 2020
46
33

Sequence Determinants of Intracellular Phase Separation by Complex Coacervation of a Disordered Protein.
Chi W Pak, Martyna Kosno, Alex S Holehouse, Shae B Padrick, Anuradha Mittal, Rustam Ali, Ali A Yunus, David R Liu, Rohit V Pappu, Michael K Rosen. Mol Cell 2016
277
33

Nucleated transcriptional condensates amplify gene expression.
Ming-Tzo Wei, Yi-Che Chang, Shunsuke F Shimobayashi, Yongdae Shin, Amy R Strom, Clifford P Brangwynne. Nat Cell Biol 2020
28
33

Kinase-controlled phase transition of membraneless organelles in mitosis.
Arpan Kumar Rai, Jia-Xuan Chen, Matthias Selbach, Lucas Pelkmans. Nature 2018
125
33

A Phase Separation Model for Transcriptional Control.
Denes Hnisz, Krishna Shrinivas, Richard A Young, Arup K Chakraborty, Phillip A Sharp. Cell 2017
582
33

Compositional Control of Phase-Separated Cellular Bodies.
Salman F Banani, Allyson M Rice, William B Peeples, Yuan Lin, Saumya Jain, Roy Parker, Michael K Rosen. Cell 2016
385
33

Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome.
Yongdae Shin, Yi-Che Chang, Daniel S W Lee, Joel Berry, David W Sanders, Pierre Ronceray, Ned S Wingreen, Mikko Haataja, Clifford P Brangwynne. Cell 2018
194
33

RNA-Mediated Feedback Control of Transcriptional Condensates.
Jonathan E Henninger, Ozgur Oksuz, Krishna Shrinivas, Ido Sagi, Gary LeRoy, Ming M Zheng, J Owen Andrews, Alicia V Zamudio, Charalampos Lazaris, Nancy M Hannett,[...]. Cell 2021
34
33

Phase separation of 53BP1 determines liquid-like behavior of DNA repair compartments.
Sinan Kilic, Aleksandra Lezaja, Marco Gatti, Eliana Bianco, Jone Michelena, Ralph Imhof, Matthias Altmeyer. EMBO J 2019
97
33


Liquid-Liquid Phase Separation in Disease.
Simon Alberti, Dorothee Dormann. Annu Rev Genet 2019
131
33

Phase separation of TAZ compartmentalizes the transcription machinery to promote gene expression.
Yi Lu, Tiantian Wu, Orit Gutman, Huasong Lu, Qiang Zhou, Yoav I Henis, Kunxin Luo. Nat Cell Biol 2020
55
33

Epigenetic Therapies for Cancer.
Susan E Bates. N Engl J Med 2020
60
16

Biomarker-Guided Development of DNA Repair Inhibitors.
James M Cleary, Andrew J Aguirre, Geoffrey I Shapiro, Alan D D'Andrea. Mol Cell 2020
25
16

Regulation of Cellular Metabolism through Phase Separation of Enzymes.
Manoël Prouteau, Robbie Loewith. Biomolecules 2018
27
16

ENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia.
Liling Wan, Hong Wen, Yuanyuan Li, Jie Lyu, Yuanxin Xi, Takayuki Hoshii, Julia K Joseph, Xiaolu Wang, Yong-Hwee E Loh, Michael A Erb,[...]. Nature 2017
96
16


P-TEFb- the final frontier.
Jiri Kohoutek. Cell Div 2009
49
16

Intrinsic disorder in transcription factors.
Jiangang Liu, Narayanan B Perumal, Christopher J Oldfield, Eric W Su, Vladimir N Uversky, A Keith Dunker. Biochemistry 2006
435
16

Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Jeremy Schwartzentruber, Andrey Korshunov, Xiao-Yang Liu, David T W Jones, Elke Pfaff, Karine Jacob, Dominik Sturm, Adam M Fontebasso, Dong-Anh Khuong Quang, Martje Tönjes,[...]. Nature 2012
16

Cyclic GMP-AMP is an endogenous second messenger in innate immune signaling by cytosolic DNA.
Jiaxi Wu, Lijun Sun, Xiang Chen, Fenghe Du, Heping Shi, Chuo Chen, Zhijian J Chen. Science 2013
976
16

Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway.
Lijun Sun, Jiaxi Wu, Fenghe Du, Xiang Chen, Zhijian J Chen. Science 2013
16



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.