A citation-based method for searching scientific literature

Elias A Tannous, Luke A Yates, Xiaodong Zhang, Peter M Burgers. Nat Struct Mol Biol 2021
Times Cited: 6







List of co-cited articles
47 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Near-Complete Structure and Model of Tel1ATM from Chaetomium thermophilum Reveals a Robust Autoinhibited ATP State.
Marijke Jansma, Christian Linke-Winnebeck, Sebastian Eustermann, Katja Lammens, Dirk Kostrewa, Kristina Stakyte, Claudia Litz, Brigitte Kessler, Karl-Peter Hopfner. Structure 2020
14
66

Cryo-EM structure of human ATR-ATRIP complex.
Qinhui Rao, Mengjie Liu, Yuan Tian, Zihan Wu, Yuhan Hao, Lei Song, Zhaoyu Qin, Chen Ding, Hong-Wei Wang, Jiawei Wang,[...]. Cell Res 2018
32
50

TopBP1 activates the ATR-ATRIP complex.
Akiko Kumagai, Joon Lee, Hae Yong Yoo, William G Dunphy. Cell 2006
518
50

Activation of the ATR kinase by the RPA-binding protein ETAA1.
Peter Haahr, Saskia Hoffmann, Maxim A X Tollenaere, Teresa Ho, Luis Ignacio Toledo, Matthias Mann, Simon Bekker-Jensen, Markus Räschle, Niels Mailand. Nat Cell Biol 2016
122
50

The essential kinase ATR: ensuring faithful duplication of a challenging genome.
Joshua C Saldivar, David Cortez, Karlene A Cimprich. Nat Rev Mol Cell Biol 2017
302
50

3.9 Å structure of the yeast Mec1-Ddc2 complex, a homolog of human ATR-ATRIP.
Xuejuan Wang, Tingting Ran, Xuan Zhang, Jiyu Xin, Zhihui Zhang, Tengwei Wu, Weiwu Wang, Gang Cai. Science 2017
38
50

RPA-Binding Protein ETAA1 Is an ATR Activator Involved in DNA Replication Stress Response.
Yuan-Cho Lee, Qing Zhou, Junjie Chen, Jingsong Yuan. Curr Biol 2016
67
50

The Dimeric Architecture of Checkpoint Kinases Mec1ATR and Tel1ATM Reveal a Common Structural Organization.
Marta Sawicka, Paulina H Wanrooij, Vidya C Darbari, Elias Tannous, Sarem Hailemariam, Daniel Bose, Alena V Makarova, Peter M Burgers, Xiaodong Zhang. J Biol Chem 2016
29
50

ETAA1 acts at stalled replication forks to maintain genome integrity.
Thomas E Bass, Jessica W Luzwick, Gina Kavanaugh, Clinton Carroll, Huzefa Dungrawala, Gloria G Glick, Michael D Feldkamp, Reid Putney, Walter J Chazin, David Cortez. Nat Cell Biol 2016
125
50

An intrinsic S/G2 checkpoint enforced by ATR.
Joshua C Saldivar, Stephan Hamperl, Michael J Bocek, Mingyu Chung, Thomas E Bass, Fernanda Cisneros-Soberanis, Kumiko Samejima, Linfeng Xie, James R Paulson, William C Earnshaw,[...]. Science 2018
108
50


ATR and ATRIP: partners in checkpoint signaling.
D Cortez, S Guntuku, J Qin, S J Elledge. Science 2001
696
50

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Shuhei Matsuoka, Bryan A Ballif, Agata Smogorzewska, E Robert McDonald, Kristen E Hurov, Ji Luo, Corey E Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal,[...]. Science 2007
50


Ataxia telangiectasia-mutated (ATM) kinase activity is regulated by ATP-driven conformational changes in the Mre11/Rad50/Nbs1 (MRN) complex.
Ji-Hoon Lee, Michael R Mand, Rajashree A Deshpande, Eri Kinoshita, Soo-Hyun Yang, Claire Wyman, Tanya T Paull. J Biol Chem 2013
63
33

A mitosis-specific and R loop-driven ATR pathway promotes faithful chromosome segregation.
Lilian Kabeche, Hai Dang Nguyen, Rémi Buisson, Lee Zou. Science 2018
112
33

Regulation of ETAA1-mediated ATR activation couples DNA replication fidelity and genome stability.
Divya Achuthankutty, Roshan Singh Thakur, Peter Haahr, Saskia Hoffmann, Alexandros P Drainas, Anna H Bizard, Joachim Weischenfeldt, Ian D Hickson, Niels Mailand. J Cell Biol 2019
9
33

TopBP1 activates ATR through ATRIP and a PIKK regulatory domain.
Daniel A Mordes, Gloria G Glick, Runxiang Zhao, David Cortez. Genes Dev 2008
235
33

An essential function for the ATR-activation-domain (AAD) of TopBP1 in mouse development and cellular senescence.
Zhong-Wei Zhou, Cong Liu, Tang-Liang Li, Christopher Bruhn, Anja Krueger, WooKee Min, Zhao-Qi Wang, Antony M Carr. PLoS Genet 2013
41
33


Structure of the intact ATM/Tel1 kinase.
Xuejuan Wang, Huanyu Chu, Mengjuan Lv, Zhihui Zhang, Shuwan Qiu, Haiyan Liu, Xuetong Shen, Weiwu Wang, Gang Cai. Nat Commun 2016
36
33

TopBP1 assembles nuclear condensates to switch on ATR signaling.
Camilla Frattini, Alexy Promonet, Emile Alghoul, Sophie Vidal-Eychenie, Marie Lamarque, Marie-Pierre Blanchard, Serge Urbach, Jihane Basbous, Angelos Constantinou. Mol Cell 2021
15
33




Distinct but Concerted Roles of ATR, DNA-PK, and Chk1 in Countering Replication Stress during S Phase.
Rémi Buisson, Jessica L Boisvert, Cyril H Benes, Lee Zou. Mol Cell 2015
165
33


ATM, ATR, and DNA-PK: The Trinity at the Heart of the DNA Damage Response.
Andrew N Blackford, Stephen P Jackson. Mol Cell 2017
660
33

Structures of closed and open conformations of dimeric human ATM.
Domagoj Baretić, Hannah K Pollard, David I Fisher, Christopher M Johnson, Balaji Santhanam, Caroline M Truman, Tomas Kouba, Alan R Fersht, Christopher Phillips, Roger L Williams. Sci Adv 2017
57
33

Common mechanisms of PIKK regulation.
Courtney A Lovejoy, David Cortez. DNA Repair (Amst) 2009
182
33


The Rad9-Hus1-Rad1 checkpoint clamp regulates interaction of TopBP1 with ATR.
Joon Lee, Akiko Kumagai, William G Dunphy. J Biol Chem 2007
206
33

Cryo-EM Structure of Nucleotide-Bound Tel1ATM Unravels the Molecular Basis of Inhibition and Structural Rationale for Disease-Associated Mutations.
Luke A Yates, Rhys M Williams, Sarem Hailemariam, Rafael Ayala, Peter Burgers, Xiaodong Zhang. Structure 2020
18
33

Structural insights into the activation of ATM kinase.
Jianxiong Xiao, Mengjie Liu, Yilun Qi, Yuriy Chaban, Chao Gao, Beiqing Pan, Yuan Tian, Zishuo Yu, Jie Li, Peijun Zhang,[...]. Cell Res 2019
13
33

ATM activation by oxidative stress.
Zhi Guo, Sergei Kozlov, Martin F Lavin, Maria D Person, Tanya T Paull. Science 2010
718
33

Clinical potential of ATM inhibitors.
Martin F Lavin, Abrey J Yeo. Mutat Res 2020
9
33

The Rad9-Hus1-Rad1 (9-1-1) clamp activates checkpoint signaling via TopBP1.
Sinny Delacroix, Jill M Wagner, Masahiko Kobayashi, Ken-ichi Yamamoto, Larry M Karnitz. Genes Dev 2007
329
33

The Cancer-Associated ATM R3008H Mutation Reveals the Link between ATM Activation and Its Exchange.
Maja Milanovic, Lisa M Houghton, Demis Menolfi, Ji-Hoon Lee, Kenta Yamamoto, Yang Li, Brian J Lee, Jun Xu, Verna M Estes, Dong Wang,[...]. Cancer Res 2021
4
50

mTOR kinase structure, mechanism and regulation.
Haijuan Yang, Derek G Rudge, Joseph D Koos, Bhamini Vaidialingam, Hyo J Yang, Nikola P Pavletich. Nature 2013
529
33

Structural Basis of Mec1-Ddc2-RPA Assembly and Activation on Single-Stranded DNA at Sites of Damage.
Ishan Deshpande, Andrew Seeber, Kenji Shimada, Jeremy J Keusch, Heinz Gut, Susan M Gasser. Mol Cell 2017
25
33

Structural basis of allosteric regulation of Tel1/ATM kinase.
Jiyu Xin, Zhu Xu, Xuejuan Wang, Yanhua Tian, Zhihui Zhang, Gang Cai. Cell Res 2019
12
33

PIKKs--the solenoid nest where partners and kinases meet.
Domagoj Baretić, Roger L Williams. Curr Opin Struct Biol 2014
43
33

The Replication Checkpoint Prevents Two Types of Fork Collapse without Regulating Replisome Stability.
Huzefa Dungrawala, Kristie L Rose, Kamakoti P Bhat, Kareem N Mohni, Gloria G Glick, Frank B Couch, David Cortez. Mol Cell 2015
198
33

cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination.
Ali Punjani, John L Rubinstein, David J Fleet, Marcus A Brubaker. Nat Methods 2017
33

New tools for automated high-resolution cryo-EM structure determination in RELION-3.
Jasenko Zivanov, Takanori Nakane, Björn O Forsberg, Dari Kimanius, Wim Jh Hagen, Erik Lindahl, Sjors Hw Scheres. Elife 2018
33

Dimers of DNA-PK create a stage for DNA double-strand break repair.
Amanda K Chaplin, Steven W Hardwick, Shikang Liang, Antonia Kefala Stavridi, Ales Hnizda, Lee R Cooper, Taiana Maia De Oliveira, Dimitri Y Chirgadze, Tom L Blundell. Nat Struct Mol Biol 2021
21
33

Yeast DNA replication protein Dpb11 activates the Mec1/ATR checkpoint kinase.
Vasundhara M Navadgi-Patil, Peter M Burgers. J Biol Chem 2008
92
16




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.