A citation-based method for searching scientific literature

Sana Alavi, Hamed Ghadiri, Bahareh Dabirmanesh, Kenji Moriyama, Khosro Khajeh, Hisao Masai. J Biochem 2021
Times Cited: 5







List of co-cited articles
14 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
707
60

Human RIF1-Protein Phosphatase 1 Prevents Degradation and Breakage of Nascent DNA on Replication Stalling.
Javier Garzón, Sebastian Ursich, Massimo Lopes, Shin-Ichiro Hiraga, Anne D Donaldson. Cell Rep 2019
29
60

How long is too long? Effects of loop size on G-quadruplex stability.
Aurore Guédin, Julien Gros, Patrizia Alberti, Jean-Louis Mergny. Nucleic Acids Res 2010
256
40

G4IPDB: A database for G-quadruplex structure forming nucleic acid interacting proteins.
Subodh Kumar Mishra, Arpita Tawani, Amit Mishra, Amit Kumar. Sci Rep 2016
54
40

Re-evaluation of G-quadruplex propensity with G4Hunter.
Amina Bedrat, Laurent Lacroix, Jean-Louis Mergny. Nucleic Acids Res 2016
260
40

G4Hunter web application: a web server for G-quadruplex prediction.
Václav Brázda, Jan Kolomazník, Jiří Lýsek, Martin Bartas, Miroslav Fojta, Jiří Šťastný, Jean-Louis Mergny. Bioinformatics 2019
46
40

BLM helicase facilitates telomere replication during leading strand synthesis of telomeres.
William C Drosopoulos, Settapong T Kosiyatrakul, Carl L Schildkraut. J Cell Biol 2015
72
40

Rif1 binds to G quadruplexes and suppresses replication over long distances.
Yutaka Kanoh, Seiji Matsumoto, Rino Fukatsu, Naoko Kakusho, Nobuaki Kono, Claire Renard-Guillet, Koji Masuda, Keisuke Iida, Kazuo Nagasawa, Katsuhiko Shirahige,[...]. Nat Struct Mol Biol 2015
93
40

Positive and Negative Regulation of DNA Replication Initiation.
Qiliang Ding, Amnon Koren. Trends Genet 2020
3
66

Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex.
Shin-Ichiro Hiraga, Gina M Alvino, Fujung Chang, Hui-Yong Lian, Akila Sridhar, Takashi Kubota, Bonita J Brewer, Michael Weinreich, M K Raghuraman, Anne D Donaldson. Genes Dev 2014
132
40

DNA replication origin activation in space and time.
Michalis Fragkos, Olivier Ganier, Philippe Coulombe, Marcel Méchali. Nat Rev Mol Cell Biol 2015
236
40

Nuclear organisation and replication timing are coupled through RIF1-PP1 interaction.
Stefano Gnan, Ilya M Flyamer, Kyle N Klein, Eleonora Castelli, Alexander Rapp, Andreas Maiser, Naiming Chen, Patrick Weber, Elin Enervald, M Cristina Cardoso,[...]. Nat Commun 2021
4
50



RNase H As Gene Modifier, Driver of Evolution and Antiviral Defense.
Karin Moelling, Felix Broecker, Giancarlo Russo, Shinichi Sunagawa. Front Microbiol 2017
25
20

G-quadruplexes regulate Epstein-Barr virus-encoded nuclear antigen 1 mRNA translation.
Pierre Murat, Jie Zhong, Lea Lekieffre, Nathan P Cowieson, Jennifer L Clancy, Thomas Preiss, Shankar Balasubramanian, Rajiv Khanna, Judy Tellam. Nat Chem Biol 2014
146
20

Genetic conflicts: the usual suspects and beyond.
Richard N McLaughlin, Harmit S Malik. J Exp Biol 2017
67
20

Nucleolin stabilizes G-quadruplex structures folded by the LTR promoter and silences HIV-1 viral transcription.
Elena Tosoni, Ilaria Frasson, Matteo Scalabrin, Rosalba Perrone, Elena Butovskaya, Matteo Nadai, Giorgio Palù, Dan Fabris, Sara N Richter. Nucleic Acids Res 2015
74
20

In-Depth Bioinformatic Analyses of Nidovirales Including Human SARS-CoV-2, SARS-CoV, MERS-CoV Viruses Suggest Important Roles of Non-canonical Nucleic Acid Structures in Their Lifecycles.
Martin Bartas, Václav Brázda, Natália Bohálová, Alessio Cantara, Adriana Volná, Tereza Stachurová, Kateřina Malachová, Eva B Jagelská, Otília Porubiaková, Jiří Červeň,[...]. Front Microbiol 2020
24
20




A guide to computational methods for G-quadruplex prediction.
Emilia Puig Lombardi, Arturo Londoño-Vallejo. Nucleic Acids Res 2020
39
20

Palindrome analyser - A new web-based server for predicting and evaluating inverted repeats in nucleotide sequences.
Václav Brázda, Jan Kolomazník, Jiří Lýsek, Lucia Hároníková, Jan Coufal, Jiří Št'astný. Biochem Biophys Res Commun 2016
31
20

QuadBase2: web server for multiplexed guanine quadruplex mining and visualization.
Parashar Dhapola, Shantanu Chowdhury. Nucleic Acids Res 2016
52
20

Chemical Targeting of a G-Quadruplex RNA in the Ebola Virus L Gene.
Shao-Ru Wang, Qiu-Yan Zhang, Jia-Qi Wang, Xing-Yi Ge, Yan-Yan Song, Ya-Fen Wang, Xiao-Dan Li, Bo-Shi Fu, Guo-Hua Xu, Bo Shu,[...]. Cell Chem Biol 2016
58
20


Stabilization of the c-myc gene promoter quadruplex by specific ligands' inhibitors of telomerase.
Thibault Lemarteleur, Dennis Gomez, Rajaa Paterski, Eliane Mandine, Patrick Mailliet, Jean-François Riou. Biochem Biophys Res Commun 2004
165
20

Viral G-quadruplexes: New frontiers in virus pathogenesis and antiviral therapy.
Emanuela Ruggiero, Sara N Richter. Annu Rep Med Chem 2020
29
20

Relationship Between G-Quadruplex Sequence Composition in Viruses and Their Hosts.
Emilia Puig Lombardi, Arturo Londoño-Vallejo, Alain Nicolas. Molecules 2019
9
20

Structures and stability of simple DNA repeats from bacteria.
Vaclav Brazda, Miroslav Fojta, Richard P Bowater. Biochem J 2020
10
20

A guide to computational methods for G-quadruplex prediction.
Emilia Puig Lombardi, Arturo Londoño-Vallejo. Nucleic Acids Res 2020
21
20

Biotechnology: Rewriting a genome.
Emmanuelle Charpentier, Jennifer A Doudna. Nature 2013
96
20


DNA and RNA quadruplex ligands.
Anne De Cian, Julien Gros, Aurore Guédin, Meriem Haddi, Sébastien Lyonnais, Lionel Guittat, Jean-François Riou, Chantal Trentesaux, Barbara Saccà, Laurent Lacroix,[...]. Nucleic Acids Symp Ser (Oxf) 2008
14
20

G-Quadruplexes: More Than Just a Kink in Microbial Genomes.
Nandhini Saranathan, Perumal Vivekanandan. Trends Microbiol 2019
47
20


Preferential binding of IFI16 protein to cruciform structure and superhelical DNA.
Václav Brázda, Jan Coufal, Jack C C Liao, Cheryl H Arrowsmith. Biochem Biophys Res Commun 2012
47
20

DNA and RNA quadruplex-binding proteins.
Václav Brázda, Lucia Hároníková, Jack C C Liao, Miroslav Fojta. Int J Mol Sci 2014
149
20

The diverse structural landscape of quadruplexes.
Helen L Lightfoot, Timo Hagen, Natalie J Tatum, Jonathan Hall. FEBS Lett 2019
44
20

Linking Virus Genomes with Host Taxonomy.
Tomoko Mihara, Yosuke Nishimura, Yugo Shimizu, Hiroki Nishiyama, Genki Yoshikawa, Hideya Uehara, Pascal Hingamp, Susumu Goto, Hiroyuki Ogata. Viruses 2016
116
20

LANA and hnRNP A1 Regulate the Translation of LANA mRNA through G-Quadruplexes.
Prerna Dabral, Jay Babu, Andrew Zareie, Subhash C Verma. J Virol 2020
12
20

Virus-Host Coevolution with a Focus on Animal and Human DNA Viruses.
Győző L Kaján, Andor Doszpoly, Zoltán László Tarján, Márton Z Vidovszky, Tibor Papp. J Mol Evol 2020
18
20

G-Quadruplexes in the Archaea Domain.
Václav Brázda, Yu Luo, Martin Bartas, Patrik Kaura, Otilia Porubiaková, Jiří Šťastný, Petr Pečinka, Daniela Verga, Violette Da Cunha, Tomio S Takahashi,[...]. Biomolecules 2020
12
20

G-quadruplexes and G-quadruplex ligands: targets and tools in antiviral therapy.
Emanuela Ruggiero, Sara N Richter. Nucleic Acids Res 2018
159
20

G-quadruplex structures in TP53 intron 3: role in alternative splicing and in production of p53 mRNA isoforms.
Virginie Marcel, Phong L T Tran, Charlotte Sagne, Ghyslaine Martel-Planche, Laurence Vaslin, Marie-Paule Teulade-Fichou, Janet Hall, Jean-Louis Mergny, Pierre Hainaut, Eric Van Dyck. Carcinogenesis 2011
141
20

Aptamer Binding Assay for the E Antigen of Hepatitis B Using Modified Aptamers with G-Quadruplex Structures.
Yanming Liu, Connie Le, D Lorne Tyrrell, X Chris Le, Xing-Fang Li. Anal Chem 2020
4
25

RNA synthesis is modulated by G-quadruplex formation in Hepatitis C virus negative RNA strand.
Chloé Jaubert, Amina Bedrat, Laura Bartolucci, Carmelo Di Primo, Michel Ventura, Jean-Louis Mergny, Samir Amrane, Marie-Line Andreola. Sci Rep 2018
23
20

Biological and biomedical implications of the co-evolution of pathogens and their hosts.
Mark E J Woolhouse, Joanne P Webster, Esteban Domingo, Brian Charlesworth, Bruce R Levin. Nat Genet 2002
486
20

The Presence and Localization of G-Quadruplex Forming Sequences in the Domain of Bacteria.
Martin Bartas, Michaela Čutová, Václav Brázda, Patrik Kaura, Jiří Šťastný, Jan Kolomazník, Jan Coufal, Pratik Goswami, Jiří Červeň, Petr Pečinka. Molecules 2019
32
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.