A citation-based method for searching scientific literature

Christoph Kuppe, Mahmoud M Ibrahim, Jennifer Kranz, Xiaoting Zhang, Susanne Ziegler, Javier Perales-Patón, Jitske Jansen, Katharina C Reimer, James R Smith, Ross Dobie, John R Wilson-Kanamori, Maurice Halder, Yaoxian Xu, Nazanin Kabgani, Nadine Kaesler, Martin Klaus, Lukas Gernhold, Victor G Puelles, Tobias B Huber, Peter Boor, Sylvia Menzel, Remco M Hoogenboezem, Eric M J Bindels, Joachim Steffens, Jürgen Floege, Rebekka K Schneider, Julio Saez-Rodriguez, Neil C Henderson, Rafael Kramann. Nature 2021
Times Cited: 65







List of co-cited articles
610 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Origin and function of myofibroblasts in kidney fibrosis.
Valerie S LeBleu, Gangadhar Taduri, Joyce O'Connell, Yingqi Teng, Vesselina G Cooke, Craig Woda, Hikaru Sugimoto, Raghu Kalluri. Nat Med 2013
744
23

Perivascular Gli1+ progenitors are key contributors to injury-induced organ fibrosis.
Rafael Kramann, Rebekka K Schneider, Derek P DiRocco, Flavia Machado, Susanne Fleig, Philip A Bondzie, Joel M Henderson, Benjamin L Ebert, Benjamin D Humphreys. Cell Stem Cell 2015
501
20

Cell profiling of mouse acute kidney injury reveals conserved cellular responses to injury.
Yuhei Kirita, Haojia Wu, Kohei Uchimura, Parker C Wilson, Benjamin D Humphreys. Proc Natl Acad Sci U S A 2020
50
22

Mechanisms of Renal Fibrosis.
Benjamin D Humphreys. Annu Rev Physiol 2018
248
16

Fate tracing reveals the pericyte and not epithelial origin of myofibroblasts in kidney fibrosis.
Benjamin D Humphreys, Shuei-Liong Lin, Akio Kobayashi, Thomas E Hudson, Brian T Nowlin, Joseph V Bonventre, M Todd Valerius, Andrew P McMahon, Jeremy S Duffield. Am J Pathol 2010
959
15

Single-cell transcriptomics of the mouse kidney reveals potential cellular targets of kidney disease.
Jihwan Park, Rojesh Shrestha, Chengxiang Qiu, Ayano Kondo, Shizheng Huang, Max Werth, Mingyao Li, Jonathan Barasch, Katalin Suszták. Science 2018
382
13

Resolving the fibrotic niche of human liver cirrhosis at single-cell level.
P Ramachandran, R Dobie, J R Wilson-Kanamori, E F Dora, B E P Henderson, N T Luu, J R Portman, K P Matchett, M Brice, J A Marwick,[...]. Nature 2019
299
12

Targeting of αv integrin identifies a core molecular pathway that regulates fibrosis in several organs.
Neil C Henderson, Thomas D Arnold, Yoshio Katamura, Marilyn M Giacomini, Juan D Rodriguez, Joseph H McCarty, Antonella Pellicoro, Elisabeth Raschperger, Christer Betsholtz, Peter G Ruminski,[...]. Nat Med 2013
485
12

Pericytes and perivascular fibroblasts are the primary source of collagen-producing cells in obstructive fibrosis of the kidney.
Shuei-Liong Lin, Tatiana Kisseleva, David A Brenner, Jeremy S Duffield. Am J Pathol 2008
593
12

Macrophages: versatile players in renal inflammation and fibrosis.
Patrick Ming-Kuen Tang, David J Nikolic-Paterson, Hui-Yao Lan. Nat Rev Nephrol 2019
189
12

Kidney Single-Cell Atlas Reveals Myeloid Heterogeneity in Progression and Regression of Kidney Disease.
Bryan R Conway, Eoin D O'Sullivan, Carolynn Cairns, James O'Sullivan, Daniel J Simpson, Angela Salzano, Katie Connor, Peng Ding, Duncan Humphries, Kevin Stewart,[...]. J Am Soc Nephrol 2020
26
30


Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
10

Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds.
Christian F Guerrero-Juarez, Priya H Dedhia, Suoqin Jin, Rolando Ruiz-Vega, Dennis Ma, Yuchen Liu, Kosuke Yamaga, Olga Shestova, Denise L Gay, Zaixin Yang,[...]. Nat Commun 2019
129
10

Tubular cell and keratinocyte single-cell transcriptomics applied to lupus nephritis reveal type I IFN and fibrosis relevant pathways.
Evan Der, Hemant Suryawanshi, Pavel Morozov, Manjunath Kustagi, Beatrice Goilav, Saritha Ranabothu, Peter Izmirly, Robert Clancy, H Michael Belmont, Mordecai Koenigsberg,[...]. Nat Immunol 2019
118
10

Single-Cell Deconvolution of Fibroblast Heterogeneity in Mouse Pulmonary Fibrosis.
Ting Xie, Yizhou Wang, Nan Deng, Guanling Huang, Forough Taghavifar, Yan Geng, Ningshan Liu, Vrishika Kulur, Changfu Yao, Peter Chen,[...]. Cell Rep 2018
183
10

Distinct fibroblast subsets drive inflammation and damage in arthritis.
Adam P Croft, Joana Campos, Kathrin Jansen, Jason D Turner, Jennifer Marshall, Moustafa Attar, Loriane Savary, Corinna Wehmeyer, Amy J Naylor, Samuel Kemble,[...]. Nature 2019
216
10

Distinct fibroblast lineages determine dermal architecture in skin development and repair.
Ryan R Driskell, Beate M Lichtenberger, Esther Hoste, Kai Kretzschmar, Ben D Simons, Marika Charalambous, Sacri R Ferron, Yann Herault, Guillaume Pavlovic, Anne C Ferguson-Smith,[...]. Nature 2013
554
10

Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis.
Ross Dobie, John R Wilson-Kanamori, Beth E P Henderson, James R Smith, Kylie P Matchett, Jordan R Portman, Karolina Wallenborg, Simone Picelli, Anna Zagorska, Swetha V Pendem,[...]. Cell Rep 2019
96
10

Parabiosis and single-cell RNA sequencing reveal a limited contribution of monocytes to myofibroblasts in kidney fibrosis.
Rafael Kramann, Flavia Machado, Haojia Wu, Tetsuro Kusaba, Konrad Hoeft, Rebekka K Schneider, Benjamin D Humphreys. JCI Insight 2018
37
18

Pericytes: developmental, physiological, and pathological perspectives, problems, and promises.
Annika Armulik, Guillem Genové, Christer Betsholtz. Dev Cell 2011
10

Myofibroblast proliferation and heterogeneity are supported by macrophages during skin repair.
Brett A Shook, Renee R Wasko, Guillermo C Rivera-Gonzalez, Emilio Salazar-Gatzimas, Francesc López-Giráldez, Biraja C Dash, Andrés R Muñoz-Rojas, Krystal D Aultman, Rachel K Zwick, Vivian Lei,[...]. Science 2018
136
9

Skin fibrosis. Identification and isolation of a dermal lineage with intrinsic fibrogenic potential.
Yuval Rinkevich, Graham G Walmsley, Michael S Hu, Zeshaan N Maan, Aaron M Newman, Micha Drukker, Michael Januszyk, Geoffrey W Krampitz, Geoffrey C Gurtner, H Peter Lorenz,[...]. Science 2015
304
9

TGF-β: the master regulator of fibrosis.
Xiao-Ming Meng, David J Nikolic-Paterson, Hui Yao Lan. Nat Rev Nephrol 2016
9

A perivascular origin for mesenchymal stem cells in multiple human organs.
Mihaela Crisan, Solomon Yap, Louis Casteilla, Chien-Wen Chen, Mirko Corselli, Tea Soon Park, Gabriella Andriolo, Bin Sun, Bo Zheng, Li Zhang,[...]. Cell Stem Cell 2008
9

Spatiotemporal immune zonation of the human kidney.
Benjamin J Stewart, John R Ferdinand, Matthew D Young, Thomas J Mitchell, Kevin W Loudon, Alexandra M Riding, Nathan Richoz, Gordon L Frazer, Joy U L Staniforth, Felipe A Vieira Braga,[...]. Science 2019
94
9

The single-cell transcriptomic landscape of early human diabetic nephropathy.
Parker C Wilson, Haojia Wu, Yuhei Kirita, Kohei Uchimura, Nicolas Ledru, Helmut G Rennke, Paul A Welling, Sushrut S Waikar, Benjamin D Humphreys. Proc Natl Acad Sci U S A 2019
97
9

Single-cell analysis uncovers fibroblast heterogeneity and criteria for fibroblast and mural cell identification and discrimination.
Lars Muhl, Guillem Genové, Stefanos Leptidis, Jianping Liu, Liqun He, Giuseppe Mocci, Ying Sun, Sonja Gustafsson, Byambajav Buyandelger, Indira V Chivukula,[...]. Nat Commun 2020
48
12

Cellular and molecular mechanisms in kidney fibrosis.
Jeremy S Duffield. J Clin Invest 2014
357
9


A framework for advancing our understanding of cancer-associated fibroblasts.
Erik Sahai, Igor Astsaturov, Edna Cukierman, David G DeNardo, Mikala Egeblad, Ronald M Evans, Douglas Fearon, Florian R Greten, Sunil R Hingorani, Tony Hunter,[...]. Nat Rev Cancer 2020
554
9

Single-Cell Profiling Reveals Sex, Lineage, and Regional Diversity in the Mouse Kidney.
Andrew Ransick, Nils O Lindström, Jing Liu, Qin Zhu, Jin-Jin Guo, Gregory F Alvarado, Albert D Kim, Hannah G Black, Junhyong Kim, Andrew P McMahon. Dev Cell 2019
89
9

Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis.
Tatsuya Tsukui, Kai-Hui Sun, Joseph B Wetter, John R Wilson-Kanamori, Lisa A Hazelwood, Neil C Henderson, Taylor S Adams, Jonas C Schupp, Sergio D Poli, Ivan O Rosas,[...]. Nat Commun 2020
71
7

Single Cell RNA Sequencing Identifies Subsets of Hepatic Stellate Cells and Myofibroblasts in Liver Fibrosis.
Oliver Krenkel, Jana Hundertmark, Thomas P Ritz, Ralf Weiskirchen, Frank Tacke. Cells 2019
68
7

Defining the Activated Fibroblast Population in Lung Fibrosis Using Single-Cell Sequencing.
Rebecca Peyser, Scott MacDonnell, Yinglin Gao, Luis Cheng, Yong Kim, Theodore Kaplan, Qin Ruan, Yi Wei, Min Ni, Christina Adler,[...]. Am J Respir Cell Mol Biol 2019
48
10

Hic1 Defines Quiescent Mesenchymal Progenitor Subpopulations with Distinct Functions and Fates in Skeletal Muscle Regeneration.
R Wilder Scott, Martin Arostegui, Ronen Schweitzer, Fabio M V Rossi, T Michael Underhill. Cell Stem Cell 2019
50
10

Macrophages in Tissue Repair, Regeneration, and Fibrosis.
Thomas A Wynn, Kevin M Vannella. Immunity 2016
7

Slide-seq: A scalable technology for measuring genome-wide expression at high spatial resolution.
Samuel G Rodriques, Robert R Stickels, Aleksandrina Goeva, Carly A Martin, Evan Murray, Charles R Vanderburg, Joshua Welch, Linlin M Chen, Fei Chen, Evan Z Macosko. Science 2019
440
7

Distinct Mesenchymal Lineages and Niches Promote Epithelial Self-Renewal and Myofibrogenesis in the Lung.
Jarod A Zepp, William J Zacharias, David B Frank, Christina A Cavanaugh, Su Zhou, Michael P Morley, Edward E Morrisey. Cell 2017
214
7

Fibroblasts in kidney fibrosis emerge via endothelial-to-mesenchymal transition.
Elisabeth M Zeisberg, Scott E Potenta, Hikaru Sugimoto, Michael Zeisberg, Raghu Kalluri. J Am Soc Nephrol 2008
590
7


Dysfunction of fibroblasts of extrarenal origin underlies renal fibrosis and renal anemia in mice.
Nariaki Asada, Masayuki Takase, Jin Nakamura, Akiko Oguchi, Misako Asada, Norio Suzuki, Ken-ichi Yamamura, Narihito Nagoshi, Shinsuke Shibata, Tata Nageswara Rao,[...]. J Clin Invest 2011
238
7

Diverse origins of the myofibroblast—implications for kidney fibrosis.
Lucas L Falke, Shima Gholizadeh, Roel Goldschmeding, Robbert J Kok, Tri Q Nguyen. Nat Rev Nephrol 2015
142
7

Single-Cell RNA Profiling of Glomerular Cells Shows Dynamic Changes in Experimental Diabetic Kidney Disease.
Jia Fu, Kemal M Akat, Zeguo Sun, Weijia Zhang, Detlef Schlondorff, Zhihong Liu, Thomas Tuschl, Kyung Lee, John Cijiang He. J Am Soc Nephrol 2019
51
9

The myofibroblast at a glance.
Pardis Pakshir, Nina Noskovicova, Monika Lodyga, Dong Ok Son, Ronen Schuster, Amanda Goodwin, Henna Karvonen, Boris Hinz. J Cell Sci 2020
36
13

Epithelial-to-mesenchymal transition induces cell cycle arrest and parenchymal damage in renal fibrosis.
Sara Lovisa, Valerie S LeBleu, Björn Tampe, Hikaru Sugimoto, Komal Vadnagara, Julienne L Carstens, Chia-Chin Wu, Yohannes Hagos, Birgitta C Burckhardt, Tsvetelina Pentcheva-Hoang,[...]. Nat Med 2015
475
7

Gli1+ Pericyte Loss Induces Capillary Rarefaction and Proximal Tubular Injury.
Rafael Kramann, Janewit Wongboonsin, Monica Chang-Panesso, Flavia G Machado, Benjamin D Humphreys. J Am Soc Nephrol 2017
75
7

A single-nucleus RNA-sequencing pipeline to decipher the molecular anatomy and pathophysiology of human kidneys.
Blue B Lake, Song Chen, Masato Hoshi, Nongluk Plongthongkum, Diane Salamon, Amanda Knoten, Anitha Vijayan, Ramakrishna Venkatesh, Eric H Kim, Derek Gao,[...]. Nat Commun 2019
67
7

Epithelial cell cycle arrest in G2/M mediates kidney fibrosis after injury.
Li Yang, Tatiana Y Besschetnova, Craig R Brooks, Jagesh V Shah, Joseph V Bonventre. Nat Med 2010
745
7

Single-Cell Transcriptome Profiling of the Kidney Glomerulus Identifies Key Cell Types and Reactions to Injury.
Jun-Jae Chung, Leonard Goldstein, Ying-Jiun J Chen, Jiyeon Lee, Joshua D Webster, Merone Roose-Girma, Sharad C Paudyal, Zora Modrusan, Anwesha Dey, Andrey S Shaw. J Am Soc Nephrol 2020
24
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.