A citation-based method for searching scientific literature

Tao Wang, Shasha Ruan, Xiaolu Zhao, Xiaohui Shi, Huajing Teng, Jianing Zhong, Mingcong You, Kun Xia, Zhongsheng Sun, Fengbiao Mao. Nucleic Acids Res 2021
Times Cited: 11







List of co-cited articles
20 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.
Ethan Cerami, Jianjiong Gao, Ugur Dogrusoz, Benjamin E Gross, Selcuk Onur Sumer, Bülent Arman Aksoy, Anders Jacobsen, Caitlin J Byrne, Michael L Heuer, Erik Larsson,[...]. Cancer Discov 2012
27

Mutual exclusivity analysis identifies oncogenic network modules.
Giovanni Ciriello, Ethan Cerami, Chris Sander, Nikolaus Schultz. Genome Res 2012
396
27

Cancer genome landscapes.
Bert Vogelstein, Nickolas Papadopoulos, Victor E Velculescu, Shibin Zhou, Luis A Diaz, Kenneth W Kinzler. Science 2013
27

OncoBase: a platform for decoding regulatory somatic mutations in human cancers.
Xianfeng Li, Leisheng Shi, Yan Wang, Jianing Zhong, Xiaolu Zhao, Huajing Teng, Xiaohui Shi, Haonan Yang, Shasha Ruan, MingKun Li,[...]. Nucleic Acids Res 2019
14
18

EpiDenovo: a platform for linking regulatory de novo mutations to developmental epigenetics and diseases.
Fengbiao Mao, Qi Liu, Xiaolu Zhao, Haonan Yang, Sen Guo, Luoyuan Xiao, Xianfeng Li, Huajing Teng, Zhongsheng Sun, Yali Dou. Nucleic Acids Res 2018
10
20

WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs.
Yuxing Liao, Jing Wang, Eric J Jaehnig, Zhiao Shi, Bing Zhang. Nucleic Acids Res 2019
617
18

HOXA9 Reprograms the Enhancer Landscape to Promote Leukemogenesis.
Yuqing Sun, Bo Zhou, Fengbiao Mao, Jing Xu, Hongzhi Miao, Zhenhua Zou, Le Tran Phuc Khoa, Younghoon Jang, Sheng Cai, Matthew Witkin,[...]. Cancer Cell 2018
48
18

Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19.
Daniel Blanco-Melo, Benjamin E Nilsson-Payant, Wen-Chun Liu, Skyler Uhl, Daisy Hoagland, Rasmus Møller, Tristan X Jordan, Kohei Oishi, Maryline Panis, David Sachs,[...]. Cell 2020
18

RBP-Var: a database of functional variants involved in regulation mediated by RNA-binding proteins.
Fengbiao Mao, Luoyuan Xiao, Xianfeng Li, Jialong Liang, Huajing Teng, Wanshi Cai, Zhong Sheng Sun. Nucleic Acids Res 2016
30
18

VARAdb: a comprehensive variation annotation database for human.
Qi Pan, Yue-Juan Liu, Xue-Feng Bai, Xiao-Le Han, Yong Jiang, Bo Ai, Shan-Shan Shi, Fan Wang, Ming-Cong Xu, Yue-Zhu Wang,[...]. Nucleic Acids Res 2021
4
50

The UCSC Genome Browser database: 2021 update.
Jairo Navarro Gonzalez, Ann S Zweig, Matthew L Speir, Daniel Schmelter, Kate R Rosenbloom, Brian J Raney, Conner C Powell, Luis R Nassar, Nathan D Maulding, Christopher M Lee,[...]. Nucleic Acids Res 2021
57
18

Comprehensive Characterization of Cancer Driver Genes and Mutations.
Matthew H Bailey, Collin Tokheim, Eduard Porta-Pardo, Sohini Sengupta, Denis Bertrand, Amila Weerasinghe, Antonio Colaprico, Michael C Wendl, Jaegil Kim, Brendan Reardon,[...]. Cell 2018
672
18

Evaluating the evaluation of cancer driver genes.
Collin J Tokheim, Nickolas Papadopoulos, Kenneth W Kinzler, Bert Vogelstein, Rachel Karchin. Proc Natl Acad Sci U S A 2016
157
18


The COSMIC Cancer Gene Census: describing genetic dysfunction across all human cancers.
Zbyslaw Sondka, Sally Bamford, Charlotte G Cole, Sari A Ward, Ian Dunham, Simon A Forbes. Nat Rev Cancer 2018
347
18


PRODIGY: personalized prioritization of driver genes.
Gal Dinstag, Ron Shamir. Bioinformatics 2020
8
25

dbSNP: the NCBI database of genetic variation.
S T Sherry, M H Ward, M Kholodov, J Baker, L Phan, E M Smigielski, K Sirotkin. Nucleic Acids Res 2001
18

Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.
Jianjiong Gao, Bülent Arman Aksoy, Ugur Dogrusoz, Gideon Dresdner, Benjamin Gross, S Onur Sumer, Yichao Sun, Anders Jacobsen, Rileen Sinha, Erik Larsson,[...]. Sci Signal 2013
18


The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
9

COVID-19 and the cardiovascular system: implications for risk assessment, diagnosis, and treatment options.
Tomasz J Guzik, Saidi A Mohiddin, Anthony Dimarco, Vimal Patel, Kostas Savvatis, Federica M Marelli-Berg, Meena S Madhur, Maciej Tomaszewski, Pasquale Maffia, Fulvio D'Acquisto,[...]. Cardiovasc Res 2020
546
9

Anti-Inflammatory Effects of Resveratrol: Mechanistic Insights.
Diego de Sá Coutinho, Maria Talita Pacheco, Rudimar Luiz Frozza, Andressa Bernardi. Int J Mol Sci 2018
89
9


COVID-19: consider cytokine storm syndromes and immunosuppression.
Puja Mehta, Daniel F McAuley, Michael Brown, Emilie Sanchez, Rachel S Tattersall, Jessica J Manson. Lancet 2020
9

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.
David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney,[...]. Nature 2020
9

Nervous system involvement after infection with COVID-19 and other coronaviruses.
Yeshun Wu, Xiaolin Xu, Zijun Chen, Jiahao Duan, Kenji Hashimoto, Ling Yang, Cunming Liu, Chun Yang. Brain Behav Immun 2020
818
9

Metascape provides a biologist-oriented resource for the analysis of systems-level datasets.
Yingyao Zhou, Bin Zhou, Lars Pache, Max Chang, Alireza Hadj Khodabakhshi, Olga Tanaseichuk, Christopher Benner, Sumit K Chanda. Nat Commun 2019
9

Recovery from COVID-19 in a patient with spondyloarthritis treated with TNF-alpha inhibitor etanercept.
Pierre-Marie Duret, Eden Sebbag, Auriane Mallick, Simon Gravier, Lionel Spielmann, Laurent Messer. Ann Rheum Dis 2020
39
9

Dysregulated Type I Interferon and Inflammatory Monocyte-Macrophage Responses Cause Lethal Pneumonia in SARS-CoV-Infected Mice.
Rudragouda Channappanavar, Anthony R Fehr, Rahul Vijay, Matthias Mack, Jincun Zhao, David K Meyerholz, Stanley Perlman. Cell Host Microbe 2016
789
9


Functional exhaustion of antiviral lymphocytes in COVID-19 patients.
Meijuan Zheng, Yong Gao, Gang Wang, Guobin Song, Siyu Liu, Dandan Sun, Yuanhong Xu, Zhigang Tian. Cell Mol Immunol 2020
761
9

COVID-19: risk for cytokine targeting in chronic inflammatory diseases?
Georg Schett, Michael Sticherling, Markus F Neurath. Nat Rev Immunol 2020
194
9

Compassionate Use of Remdesivir for Patients with Severe Covid-19.
Jonathan Grein, Norio Ohmagari, Daniel Shin, George Diaz, Erika Asperges, Antonella Castagna, Torsten Feldt, Gary Green, Margaret L Green, François-Xavier Lescure,[...]. N Engl J Med 2020
9

Early Short-Course Corticosteroids in Hospitalized Patients With COVID-19.
Raef Fadel, Austin R Morrison, Amit Vahia, Zachary R Smith, Zohra Chaudhry, Pallavi Bhargava, Joseph Miller, Rachel M Kenney, George Alangaden, Mayur S Ramesh. Clin Infect Dis 2020
203
9

Complement receptor Mac-1 is an adaptor for NB1 (CD177)-mediated PR3-ANCA neutrophil activation.
Uwe Jerke, Susanne Rolle, Gunnar Dittmar, Behnaz Bayat, Sentot Santoso, Anje Sporbert, Friedrich Luft, Ralph Kettritz. J Biol Chem 2011
53
9


Genistein as an anti-inflammatory agent.
M Verdrengh, I M Jonsson, R Holmdahl, A Tarkowski. Inflamm Res 2003
161
9

Identification and prioritization of gene sets associated with schizophrenia risk by co-expression network analysis in human brain.
Eugenia Radulescu, Andrew E Jaffe, Richard E Straub, Qiang Chen, Joo Heon Shin, Thomas M Hyde, Joel E Kleinman, Daniel R Weinberger. Mol Psychiatry 2020
45
9


Persisting SARS-CoV-2 viraemia after rituximab therapy: two cases with fatal outcome and a review of the literature.
Phil-Robin Tepasse, Wali Hafezi, Mathias Lutz, Joachim Kühn, Christian Wilms, Rainer Wiewrodt, Jan Sackarnd, Martin Keller, Hartmut H Schmidt, Richard Vollenberg. Br J Haematol 2020
63
9

Reduction and Functional Exhaustion of T Cells in Patients With Coronavirus Disease 2019 (COVID-19).
Bo Diao, Chenhui Wang, Yingjun Tan, Xiewan Chen, Ying Liu, Lifen Ning, Li Chen, Min Li, Yueping Liu, Gang Wang,[...]. Front Immunol 2020
947
9

Inhibiting neuroinflammation: The role and therapeutic potential of GABA in neuro-immune interactions.
Tadhg Crowley, John F Cryan, Eric J Downer, Olivia F O'Leary. Brain Behav Immun 2016
43
9

Prevalence and architecture of posttranscriptionally impaired synonymous mutations in 8,320 genomes across 22 cancer types.
Huajing Teng, Wenqing Wei, Qinglan Li, Meiying Xue, Xiaohui Shi, Xianfeng Li, Fengbiao Mao, Zhongsheng Sun. Nucleic Acids Res 2020
10
10


Rituximab for granulomatosis with polyangiitis in the pandemic of covid-19: lessons from a case with severe pneumonia.
Philippe Guilpain, Clément Le Bihan, Vincent Foulongne, Patrice Taourel, Nathalie Pansu, Alexandre Thibault Jacques Maria, Boris Jung, Romaric Larcher, Kada Klouche, Vincent Le Moing. Ann Rheum Dis 2021
80
9

Zinc and its role in immunity and inflammation.
Paola Bonaventura, Giulia Benedetti, Francis Albarède, Pierre Miossec. Autoimmun Rev 2015
241
9

Prognostic Genes of Breast Cancer Identified by Gene Co-expression Network Analysis.
Jianing Tang, Deguang Kong, Qiuxia Cui, Kun Wang, Dan Zhang, Yan Gong, Gaosong Wu. Front Oncol 2018
88
9

AI-Driver: an ensemble method for identifying driver mutations in personal cancer genomes.
Haoxuan Wang, Tao Wang, Xiaolu Zhao, Honghu Wu, Mingcong You, Zhongsheng Sun, Fengbiao Mao. NAR Genom Bioinform 2020
1
100

Effective treatment of severe COVID-19 patients with tocilizumab.
Xiaoling Xu, Mingfeng Han, Tiantian Li, Wei Sun, Dongsheng Wang, Binqing Fu, Yonggang Zhou, Xiaohu Zheng, Yun Yang, Xiuyong Li,[...]. Proc Natl Acad Sci U S A 2020
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.