A citation-based method for searching scientific literature

Gamze Gürsoy, Prashant Emani, Charlotte M Brannon, Otto A Jolanki, Arif Harmanci, J Seth Strattan, J Michael Cherry, Andrew D Miranker, Mark Gerstein. Cell 2020
Times Cited: 11







List of co-cited articles
84 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



Routes for breaching and protecting genetic privacy.
Yaniv Erlich, Arvind Narayanan. Nat Rev Genet 2014
156
45

Identifying personal genomes by surname inference.
Melissa Gymrek, Amy L McGuire, David Golan, Eran Halperin, Yaniv Erlich. Science 2013
493
45


Realizing the potential of blockchain technologies in genomics.
Halil Ibrahim Ozercan, Atalay Mert Ileri, Erman Ayday, Can Alkan. Genome Res 2018
32
45


Genetics. Genomic research and human subject privacy.
Zhen Lin, Art B Owen, Russ B Altman. Science 2004
185
36

Secure genome-wide association analysis using multiparty computation.
Hyunghoon Cho, David J Wu, Bonnie Berger. Nat Biotechnol 2018
42
36

Identity inference of genomic data using long-range familial searches.
Yaniv Erlich, Tal Shor, Itsik Pe'er, Shai Carmi. Science 2018
104
36

Sketching algorithms for genomic data analysis and querying in a secure enclave.
Can Kockan, Kaiyuan Zhu, Natnatee Dokmai, Nikolai Karpov, M Oguzhan Kulekci, David P Woodruff, S Cenk Sahinalp. Nat Methods 2020
10
40

Privacy challenges and research opportunities for genomic data sharing.
Luca Bonomi, Yingxiang Huang, Lucila Ohno-Machado. Nat Genet 2020
30
36


Methylation array data can simultaneously identify individuals and convey protected health information: an unrecognized ethical concern.
Robert A Philibert, Nicolas Terry, Cheryl Erwin, Winter J Philibert, Steven Rh Beach, Gene H Brody. Clin Epigenetics 2014
25
27

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
27

NCBI's Database of Genotypes and Phenotypes: dbGaP.
Kimberly A Tryka, Luning Hao, Anne Sturcke, Yumi Jin, Zhen Y Wang, Lora Ziyabari, Moira Lee, Natalia Popova, Nataliya Sharopova, Masato Kimura,[...]. Nucleic Acids Res 2014
264
27

Genome Reconstruction Attacks Against Genomic Data-Sharing Beacons.
Kerem Ayoz, Erman Ayday, A Ercument Cicek. Proc Priv Enhanc Technol 2021
5
60

On sharing quantitative trait GWAS results in an era of multiple-omics data and the limits of genomic privacy.
Hae Kyung Im, Eric R Gamazon, Dan L Nicolae, Nancy J Cox. Am J Hum Genet 2012
53
27

A privacy-preserving solution for compressed storage and selective retrieval of genomic data.
Zhicong Huang, Erman Ayday, Huang Lin, Raeka S Aiyar, Adam Molyneaux, Zhenyu Xu, Jacques Fellay, Lars M Steinmetz, Jean-Pierre Hubaux. Genome Res 2016
14
27

Privacy Risks from Genomic Data-Sharing Beacons.
Suyash S Shringarpure, Carlos D Bustamante. Am J Hum Genet 2015
86
27

Resolving individuals contributing trace amounts of DNA to highly complex mixtures using high-density SNP genotyping microarrays.
Nils Homer, Szabolcs Szelinger, Margot Redman, David Duggan, Waibhav Tembe, Jill Muehling, John V Pearson, Dietrich A Stephan, Stanley F Nelson, David W Craig. PLoS Genet 2008
469
27

Privacy Policy and Technology in Biomedical Data Science.
April Moreno Arellano, Wenrui Dai, Shuang Wang, Xiaoqian Jiang, Lucila Ohno-Machado. Annu Rev Biomed Data Sci 2018
15
27

Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.
Jean Louis Raisaro, Florian Tramèr, Zhanglong Ji, Diyue Bu, Yongan Zhao, Knox Carey, David Lloyd, Heidi Sofia, Dixie Baker, Paul Flicek,[...]. J Am Med Inform Assoc 2017
39
27

Using blockchain to log genome dataset access: efficient storage and query.
Gamze Gürsoy, Robert Bjornson, Molly E Green, Mark Gerstein. BMC Med Genomics 2020
8
37

Federated discovery and sharing of genomic data using Beacons.
Marc Fiume, Miroslav Cupak, Stephen Keenan, Jordi Rambla, Sabela de la Torre, Stephanie O M Dyke, Anthony J Brookes, Knox Carey, David Lloyd, Peter Goodhand,[...]. Nat Biotechnol 2019
37
27

Identification of individuals by trait prediction using whole-genome sequencing data.
Christoph Lippert, Riccardo Sabatini, M Cyrus Maher, Eun Yong Kang, Seunghak Lee, Okan Arikan, Alena Harley, Axel Bernal, Peter Garst, Victor Lavrenko,[...]. Proc Natl Acad Sci U S A 2017
60
27


DNA sequencing at 40: past, present and future.
Jay Shendure, Shankar Balasubramanian, George M Church, Walter Gilbert, Jane Rogers, Jeffery A Schloss, Robert H Waterston. Nature 2017
339
18

Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments.
Neva C Durand, Muhammad S Shamim, Ido Machol, Suhas S P Rao, Miriam H Huntley, Eric S Lander, Erez Lieberman Aiden. Cell Syst 2016
837
18

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
18

Expression quantitative trait loci: present and future.
Alexandra C Nica, Emmanouil T Dermitzakis. Philos Trans R Soc Lond B Biol Sci 2013
214
18

Swarm Learning for decentralized and confidential clinical machine learning.
Stefanie Warnat-Herresthal, Hartmut Schultze, Krishnaprasad Lingadahalli Shastry, Sathyanarayanan Manamohan, Saikat Mukherjee, Vishesh Garg, Ravi Sarveswara, Kristian Händler, Peter Pickkers, N Ahmad Aziz,[...]. Nature 2021
58
18

Creating artificial human genomes using generative neural networks.
Burak Yelmen, Aurélien Decelle, Linda Ongaro, Davide Marnetto, Corentin Tallec, Francesco Montinaro, Cyril Furtlehner, Luca Pagani, Flora Jay. PLoS Genet 2021
16
18

SAFETY: Secure gwAs in Federated Environment through a hYbrid Solution.
Md Nazmus Sadat, Md Momin Al Aziz, Noman Mohammed, Feng Chen, Xiaoqian Jiang, Shuang Wang. IEEE/ACM Trans Comput Biol Bioinform 2019
11
18

mRNA-Seq whole-transcriptome analysis of a single cell.
Fuchou Tang, Catalin Barbacioru, Yangzhou Wang, Ellen Nordman, Clarence Lee, Nanlan Xu, Xiaohui Wang, John Bodeau, Brian B Tuch, Asim Siddiqui,[...]. Nat Methods 2009
18

Epigenome data release: a participant-centered approach to privacy protection.
Stephanie O M Dyke, Warren A Cheung, Yann Joly, Ole Ammerpohl, Pavlo Lutsik, Mark A Rothstein, Maxime Caron, Stephan Busche, Guillaume Bourque, Lars Rönnblom,[...]. Genome Biol 2015
24
18

On Jim Watson's APOE status: genetic information is hard to hide.
Dale R Nyholt, Chang-En Yu, Peter M Visscher. Eur J Hum Genet 2009
55
18


A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
18

Are Data Sharing and Privacy Protection Mutually Exclusive?
Yann Joly, Stephanie O M Dyke, Bartha M Knoppers, Tomi Pastinen. Cell 2016
26
18

iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching.
Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, XiaoFeng Wang, Tyler Bath, Diyue Bu, Lei Wang, Arif Harmanci, Shaojie Zhang, Degui Zhi,[...]. BMC Med Genomics 2020
10
20

Fair compute loads enabled by blockchain: sharing models by alternating client and server roles.
Tsung-Ting Kuo, Rodney A Gabriel, Lucila Ohno-Machado. J Am Med Inform Assoc 2019
19
18

The Cancer Genome Atlas Pan-Cancer analysis project.
John N Weinstein, Eric A Collisson, Gordon B Mills, Kenna R Mills Shaw, Brad A Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M Stuart. Nat Genet 2013
18

FANCY: fast estimation of privacy risk in functional genomics data.
Gamze Gürsoy, Charlotte M Brannon, Fabio C P Navarro, Mark Gerstein. Bioinformatics 2021
2
100

The "All of Us" Research Program.
Joshua C Denny, Joni L Rutter, David B Goldstein, Anthony Philippakis, Jordan W Smoller, Gwynne Jenkins, Eric Dishman. N Engl J Med 2019
345
18

Recovering genotypes and phenotypes using allele-specific genes.
Gamze Gürsoy, Nancy Lu, Sarah Wagner, Mark Gerstein. Genome Biol 2021
2
100

Identifying genetic relatives without compromising privacy.
Dan He, Nicholas A Furlotte, Farhad Hormozdiari, Jong Wha J Joo, Akshay Wadia, Rafail Ostrovsky, Amit Sahai, Eleazar Eskin. Genome Res 2014
20
18

Research ethics. The complexities of genomic identifiability.
Laura L Rodriguez, Lisa D Brooks, Judith H Greenberg, Eric D Green. Science 2013
73
18

Next generation sequencing in functional genomics.
Thomas Werner. Brief Bioinform 2010
65
18


Blockchain distributed ledger technologies for biomedical and health care applications.
Tsung-Ting Kuo, Hyeon-Eui Kim, Lucila Ohno-Machado. J Am Med Inform Assoc 2017
142
18


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.