A citation-based method for searching scientific literature

András Zeke, László Dobson, Levente István Szekeres, Tamás Langó, Gábor E Tusnády. J Mol Biol 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


PPD: A Manually Curated Database for Experimentally Verified Prokaryotic Promoters.
Wei Su, Meng-Lu Liu, Yu-He Yang, Jia-Shu Wang, Shi-Hao Li, Hao Lv, Fu-Ying Dao, Hui Yang, Hao Lin. J Mol Biol 2021
17
50

RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive.
Yana Rose, Jose M Duarte, Robert Lowe, Joan Segura, Chunxiao Bi, Charmi Bhikadiya, Li Chen, Alexander S Rose, Sebastian Bittrich, Stephen K Burley,[...]. J Mol Biol 2021
22
50

aScan: A Novel Method for the Study of Allele Specific Expression in Single Individuals.
Federico Zambelli, Matteo Chiara, Erika Ferrandi, Pietro Mandreoli, Marco Antonio Tangaro, Giulio Pavesi, Graziano Pesole. J Mol Biol 2021
1
100

MEDUSA: Prediction of Protein Flexibility from Sequence.
Yann Vander Meersche, Gabriel Cretin, Alexandre G de Brevern, Jean-Christophe Gelly, Tatiana Galochkina. J Mol Biol 2021
11
50

RiPPMiner-Genome: A Web Resource for Automated Prediction of Crosslinked Chemical Structures of RiPPs by Genome Mining.
Priyesh Agrawal, Sana Amir, Deepak, Drishtee Barua, Debasisa Mohanty. J Mol Biol 2021
5
50

BetAware-Deep: An Accurate Web Server for Discrimination and Topology Prediction of Prokaryotic Transmembrane β-barrel Proteins.
Giovanni Madeo, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio. J Mol Biol 2021
3
50





Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics.
Andrew I Jewett, David Stelter, Jason Lambert, Shyam M Saladi, Otello M Roscioni, Matteo Ricci, Ludovic Autin, Martina Maritan, Saeed M Bashusqeh, Tom Keyes,[...]. J Mol Biol 2021
14
50


interferENZY: A Web-Based Tool for Enzymatic Assay Validation and Standardized Kinetic Analysis.
Maria Filipa Pinto, Antonio Baici, Pedro José Barbosa Pereira, Sandra Macedo-Ribeiro, Annalisa Pastore, Fernando Rocha, Pedro M Martins. J Mol Biol 2021
3
50

FunCoup 5: Functional Association Networks in All Domains of Life, Supporting Directed Links and Tissue-Specificity.
Emma Persson, Miguel Castresana-Aguirre, Davide Buzzao, Dimitri Guala, Erik L L Sonnhammer. J Mol Biol 2021
5
50

MPTherm-pred: Analysis and Prediction of Thermal Stability Changes upon Mutations in Transmembrane Proteins.
A Kulandaisamy, Jan Zaucha, Dmitrij Frishman, M Michael Gromiha. J Mol Biol 2021
5
50

ANuPP: A Versatile Tool to Predict Aggregation Nucleating Regions in Peptides and Proteins.
R Prabakaran, Puneet Rawat, Sandeep Kumar, M Michael Gromiha. J Mol Biol 2021
7
50

ncRNAVar: A Manually Curated Database for Identification of Noncoding RNA Variants Associated with Human Diseases.
Wenliang Zhang, Binghui Zeng, Minglei Yang, Huan Yang, Jianbo Wang, Yongjie Deng, Haiyue Zhang, Guocai Yao, Song Wu, Weizhong Li. J Mol Biol 2021
6
50

ModFlex: Towards Function Focused Protein Modeling.
Mayya Sedova, Lukasz Jaroszewski, Mallika Iyer, Zhanwen Li, Adam Godzik. J Mol Biol 2021
1
100

REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences.
Mohamed Kamel, Kristina Kastano, Pablo Mier, Miguel A Andrade-Navarro. J Mol Biol 2021
1
100


FunRich enables enrichment analysis of OMICs datasets.
Pamali Fonseka, Mohashin Pathan, Sai V Chitti, Taeyoung Kang, Suresh Mathivanan. J Mol Biol 2021
38
50

Constrained Standardization of Count Data from Massive Parallel Sequencing.
Joris Van Houtven, Bart Cuypers, Pieter Meysman, Jef Hooyberghs, Kris Laukens, Dirk Valkenborg. J Mol Biol 2021
1
100

Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data.
Patricia Mirela-Bota, Joaquim Aguirre-Plans, Alberto Meseguer, Cristiano Galletti, Joan Segura, Joan Planas-Iglesias, Javi Garcia-Garcia, Emre Guney, Baldo Oliva, Narcis Fernandez-Fuentes. J Mol Biol 2021
2
50

GeneCaRNA: A Comprehensive Gene-centric Database of Human Non-coding RNAs in the GeneCards Suite.
Ruth Barshir, Simon Fishilevich, Tsippi Iny-Stein, Ofer Zelig, Yaron Mazor, Yaron Guan-Golan, Marilyn Safran, Doron Lancet. J Mol Biol 2021
6
50


geno5mC: A Database to Explore the Association between Genetic Variation (SNPs) and CpG Methylation in the Human Genome.
C Gómez-Martín, E Aparicio-Puerta, J M Medina, Guillermo Barturen, J L Oliver, M Hackenberg. J Mol Biol 2021
1
100

IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding.
Bálint Mészáros, Gábor Erdos, Zsuzsanna Dosztányi. Nucleic Acids Res 2018
503
50

Membrane proteins follow multiple pathways to the basolateral cell surface in polarized epithelial cells.
Glen A Farr, Michael Hull, Ira Mellman, Michael J Caplan. J Cell Biol 2009
64
50



Partial proteolysis improves the identification of the extracellular segments of transmembrane proteins by surface biotinylation.
Tamás Langó, Zoltán Gergő Pataki, Lilla Turiák, András Ács, Julia Kornélia Varga, György Várady, Nóra Kucsma, László Drahos, Gábor E Tusnády. Sci Rep 2020
2
50

Identification of Extracellular Segments by Mass Spectrometry Improves Topology Prediction of Transmembrane Proteins.
Tamás Langó, Gergely Róna, Éva Hunyadi-Gulyás, Lilla Turiák, Julia Varga, László Dobson, György Várady, László Drahos, Beáta G Vértessy, Katalin F Medzihradszky,[...]. Sci Rep 2017
8
50

Trafficking to the apical and basolateral membranes in polarized epithelial cells.
Emily H Stoops, Michael J Caplan. J Am Soc Nephrol 2014
63
50

Adaptor protein complexes and intracellular transport.
Sang Yoon Park, Xiaoli Guo. Biosci Rep 2014
92
50

SignalP 5.0 improves signal peptide predictions using deep neural networks.
José Juan Almagro Armenteros, Konstantinos D Tsirigos, Casper Kaae Sønderby, Thomas Nordahl Petersen, Ole Winther, Søren Brunak, Gunnar von Heijne, Henrik Nielsen. Nat Biotechnol 2019
50

Disordered regions in transmembrane proteins.
Gábor E Tusnády, László Dobson, Peter Tompa. Biochim Biophys Acta 2015
19
50

DeepLoc: prediction of protein subcellular localization using deep learning.
José Juan Almagro Armenteros, Casper Kaae Sønderby, Søren Kaae Sønderby, Henrik Nielsen, Ole Winther. Bioinformatics 2017
386
50

Polypeptide GalNAc-Ts: from redundancy to specificity.
Matilde de Las Rivas, Erandi Lira-Navarrete, Thomas A Gerken, Ramon Hurtado-Guerrero. Curr Opin Struct Biol 2019
39
50



A Conserved Motif Provides Binding Specificity to the PP2A-B56 Phosphatase.
Emil Peter Thrane Hertz, Thomas Kruse, Norman E Davey, Blanca López-Méndez, Jón Otti Sigurðsson, Guillermo Montoya, Jesper V Olsen, Jakob Nilsson. Mol Cell 2016
136
50

New insights into apical-basal polarization in epithelia.
Amalia Riga, Victoria G Castiglioni, Mike Boxem. Curr Opin Cell Biol 2020
26
50

The O-glycosylated stalk domain is required for apical sorting of neurotrophin receptors in polarized MDCK cells.
C Yeaman, A H Le Gall, A N Baldwin, L Monlauzeur, A Le Bivic, E Rodriguez-Boulan. J Cell Biol 1997
237
50

Apical trafficking in epithelial cells: signals, clusters and motors.
Ora A Weisz, Enrique Rodriguez-Boulan. J Cell Sci 2009
214
50


From cells to organs: building polarized tissue.
David M Bryant, Keith E Mostov. Nat Rev Mol Cell Biol 2008
528
50

Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.
Kim Van Roey, Bora Uyar, Robert J Weatheritt, Holger Dinkel, Markus Seiler, Aidan Budd, Toby J Gibson, Norman E Davey. Chem Rev 2014
227
50

A Carboxy-Terminal Monoleucine-Based Motif Participates in the Basolateral Targeting of the Na+/I- Symporter.
Mariano Martín, Carlos Pablo Modenutti, Victoria Peyret, Romina Celeste Geysels, Elisabeth Darrouzet, Thierry Pourcher, Ana María Masini-Repiso, Marcelo Adrián Martí, Nancy Carrasco, Juan Pablo Nicola. Endocrinology 2019
17
50

Covalently modified carboxyl side chains on cell surface leads to a novel method toward topology analysis of transmembrane proteins.
Anna Müller, Tamás Langó, Lilla Turiák, András Ács, György Várady, Nóra Kucsma, László Drahos, Gábor E Tusnády. Sci Rep 2019
6
50

N-glycans as apical targeting signals in polarized epithelial cells.
Paula Urquhart, Susan Pang, Nigel M Hooper. Biochem Soc Symp 2005
15
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.