András Zeke, László Dobson, Levente István Szekeres, Tamás Langó, Gábor E Tusnády. J Mol Biol 2021
Times Cited: 2
Times Cited: 2
Times Cited
Times Co-cited
Similarity
PPD: A Manually Curated Database for Experimentally Verified Prokaryotic Promoters.
Wei Su, Meng-Lu Liu, Yu-He Yang, Jia-Shu Wang, Shi-Hao Li, Hao Lv, Fu-Ying Dao, Hui Yang, Hao Lin. J Mol Biol 2021
Wei Su, Meng-Lu Liu, Yu-He Yang, Jia-Shu Wang, Shi-Hao Li, Hao Lv, Fu-Ying Dao, Hui Yang, Hao Lin. J Mol Biol 2021
50
RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive.
Yana Rose, Jose M Duarte, Robert Lowe, Joan Segura, Chunxiao Bi, Charmi Bhikadiya, Li Chen, Alexander S Rose, Sebastian Bittrich, Stephen K Burley,[...]. J Mol Biol 2021
Yana Rose, Jose M Duarte, Robert Lowe, Joan Segura, Chunxiao Bi, Charmi Bhikadiya, Li Chen, Alexander S Rose, Sebastian Bittrich, Stephen K Burley,[...]. J Mol Biol 2021
50
aScan: A Novel Method for the Study of Allele Specific Expression in Single Individuals.
Federico Zambelli, Matteo Chiara, Erika Ferrandi, Pietro Mandreoli, Marco Antonio Tangaro, Giulio Pavesi, Graziano Pesole. J Mol Biol 2021
Federico Zambelli, Matteo Chiara, Erika Ferrandi, Pietro Mandreoli, Marco Antonio Tangaro, Giulio Pavesi, Graziano Pesole. J Mol Biol 2021
100
MEDUSA: Prediction of Protein Flexibility from Sequence.
Yann Vander Meersche, Gabriel Cretin, Alexandre G de Brevern, Jean-Christophe Gelly, Tatiana Galochkina. J Mol Biol 2021
Yann Vander Meersche, Gabriel Cretin, Alexandre G de Brevern, Jean-Christophe Gelly, Tatiana Galochkina. J Mol Biol 2021
50
RiPPMiner-Genome: A Web Resource for Automated Prediction of Crosslinked Chemical Structures of RiPPs by Genome Mining.
Priyesh Agrawal, Sana Amir, Deepak, Drishtee Barua, Debasisa Mohanty. J Mol Biol 2021
Priyesh Agrawal, Sana Amir, Deepak, Drishtee Barua, Debasisa Mohanty. J Mol Biol 2021
50
BetAware-Deep: An Accurate Web Server for Discrimination and Topology Prediction of Prokaryotic Transmembrane β-barrel Proteins.
Giovanni Madeo, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio. J Mol Biol 2021
Giovanni Madeo, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio. J Mol Biol 2021
50
ELASPIC2 (EL2): Combining Contextualized Language Models and Graph Neural Networks to Predict Effects of Mutations.
Alexey Strokach, Tian Yu Lu, Philip M Kim. J Mol Biol 2021
Alexey Strokach, Tian Yu Lu, Philip M Kim. J Mol Biol 2021
50
Cppsite 2.0: An Available Database of Experimentally Validated Cell-Penetrating Peptides Predicting their Secondary and Tertiary Structures.
Kimia Kardani, Azam Bolhassani. J Mol Biol 2021
Kimia Kardani, Azam Bolhassani. J Mol Biol 2021
50
GCsnap: Interactive Snapshots for the Comparison of Protein-Coding Genomic Contexts.
Joana Pereira. J Mol Biol 2021
Joana Pereira. J Mol Biol 2021
100
ADDRESS: A Database of Disease-associated Human Variants Incorporating Protein Structure and Folding Stabilities.
Jaie Woodard, Chengxin Zhang, Yang Zhang. J Mol Biol 2021
Jaie Woodard, Chengxin Zhang, Yang Zhang. J Mol Biol 2021
50
Moltemplate: A Tool for Coarse-Grained Modeling of Complex Biological Matter and Soft Condensed Matter Physics.
Andrew I Jewett, David Stelter, Jason Lambert, Shyam M Saladi, Otello M Roscioni, Matteo Ricci, Ludovic Autin, Martina Maritan, Saeed M Bashusqeh, Tom Keyes,[...]. J Mol Biol 2021
Andrew I Jewett, David Stelter, Jason Lambert, Shyam M Saladi, Otello M Roscioni, Matteo Ricci, Ludovic Autin, Martina Maritan, Saeed M Bashusqeh, Tom Keyes,[...]. J Mol Biol 2021
50
MPBuilder: A PyMOL Plugin for Building and Refinement of Solubilized Membrane Proteins Against Small Angle X-ray Scattering Data.
D S Molodenskiy, D I Svergun, H D T Mertens. J Mol Biol 2021
D S Molodenskiy, D I Svergun, H D T Mertens. J Mol Biol 2021
50
interferENZY: A Web-Based Tool for Enzymatic Assay Validation and Standardized Kinetic Analysis.
Maria Filipa Pinto, Antonio Baici, Pedro José Barbosa Pereira, Sandra Macedo-Ribeiro, Annalisa Pastore, Fernando Rocha, Pedro M Martins. J Mol Biol 2021
Maria Filipa Pinto, Antonio Baici, Pedro José Barbosa Pereira, Sandra Macedo-Ribeiro, Annalisa Pastore, Fernando Rocha, Pedro M Martins. J Mol Biol 2021
50
FunCoup 5: Functional Association Networks in All Domains of Life, Supporting Directed Links and Tissue-Specificity.
Emma Persson, Miguel Castresana-Aguirre, Davide Buzzao, Dimitri Guala, Erik L L Sonnhammer. J Mol Biol 2021
Emma Persson, Miguel Castresana-Aguirre, Davide Buzzao, Dimitri Guala, Erik L L Sonnhammer. J Mol Biol 2021
50
MPTherm-pred: Analysis and Prediction of Thermal Stability Changes upon Mutations in Transmembrane Proteins.
A Kulandaisamy, Jan Zaucha, Dmitrij Frishman, M Michael Gromiha. J Mol Biol 2021
A Kulandaisamy, Jan Zaucha, Dmitrij Frishman, M Michael Gromiha. J Mol Biol 2021
50
ANuPP: A Versatile Tool to Predict Aggregation Nucleating Regions in Peptides and Proteins.
R Prabakaran, Puneet Rawat, Sandeep Kumar, M Michael Gromiha. J Mol Biol 2021
R Prabakaran, Puneet Rawat, Sandeep Kumar, M Michael Gromiha. J Mol Biol 2021
50
ncRNAVar: A Manually Curated Database for Identification of Noncoding RNA Variants Associated with Human Diseases.
Wenliang Zhang, Binghui Zeng, Minglei Yang, Huan Yang, Jianbo Wang, Yongjie Deng, Haiyue Zhang, Guocai Yao, Song Wu, Weizhong Li. J Mol Biol 2021
Wenliang Zhang, Binghui Zeng, Minglei Yang, Huan Yang, Jianbo Wang, Yongjie Deng, Haiyue Zhang, Guocai Yao, Song Wu, Weizhong Li. J Mol Biol 2021
50
ModFlex: Towards Function Focused Protein Modeling.
Mayya Sedova, Lukasz Jaroszewski, Mallika Iyer, Zhanwen Li, Adam Godzik. J Mol Biol 2021
Mayya Sedova, Lukasz Jaroszewski, Mallika Iyer, Zhanwen Li, Adam Godzik. J Mol Biol 2021
100
REP2: A Web Server to Detect Common Tandem Repeats in Protein Sequences.
Mohamed Kamel, Kristina Kastano, Pablo Mier, Miguel A Andrade-Navarro. J Mol Biol 2021
Mohamed Kamel, Kristina Kastano, Pablo Mier, Miguel A Andrade-Navarro. J Mol Biol 2021
100
CD-NuSS: A Web Server for the Automated Secondary Structural Characterization of the Nucleic Acids from Circular Dichroism Spectra Using Extreme Gradient Boosting Decision-Tree, Neural Network and Kohonen Algorithms.
Chakkarai Sathyaseelan, Vinothini Vijayakumar, Thenmalarchelvi Rathinavelan. J Mol Biol 2021
Chakkarai Sathyaseelan, Vinothini Vijayakumar, Thenmalarchelvi Rathinavelan. J Mol Biol 2021
50
FunRich enables enrichment analysis of OMICs datasets.
Pamali Fonseka, Mohashin Pathan, Sai V Chitti, Taeyoung Kang, Suresh Mathivanan. J Mol Biol 2021
Pamali Fonseka, Mohashin Pathan, Sai V Chitti, Taeyoung Kang, Suresh Mathivanan. J Mol Biol 2021
50
Constrained Standardization of Count Data from Massive Parallel Sequencing.
Joris Van Houtven, Bart Cuypers, Pieter Meysman, Jef Hooyberghs, Kris Laukens, Dirk Valkenborg. J Mol Biol 2021
Joris Van Houtven, Bart Cuypers, Pieter Meysman, Jef Hooyberghs, Kris Laukens, Dirk Valkenborg. J Mol Biol 2021
100
Galaxy InteractoMIX: An Integrated Computational Platform for the Study of Protein-Protein Interaction Data.
Patricia Mirela-Bota, Joaquim Aguirre-Plans, Alberto Meseguer, Cristiano Galletti, Joan Segura, Joan Planas-Iglesias, Javi Garcia-Garcia, Emre Guney, Baldo Oliva, Narcis Fernandez-Fuentes. J Mol Biol 2021
Patricia Mirela-Bota, Joaquim Aguirre-Plans, Alberto Meseguer, Cristiano Galletti, Joan Segura, Joan Planas-Iglesias, Javi Garcia-Garcia, Emre Guney, Baldo Oliva, Narcis Fernandez-Fuentes. J Mol Biol 2021
50
GeneCaRNA: A Comprehensive Gene-centric Database of Human Non-coding RNAs in the GeneCards Suite.
Ruth Barshir, Simon Fishilevich, Tsippi Iny-Stein, Ofer Zelig, Yaron Mazor, Yaron Guan-Golan, Marilyn Safran, Doron Lancet. J Mol Biol 2021
Ruth Barshir, Simon Fishilevich, Tsippi Iny-Stein, Ofer Zelig, Yaron Mazor, Yaron Guan-Golan, Marilyn Safran, Doron Lancet. J Mol Biol 2021
50
The DBSAV Database: Predicting Deleteriousness of Single Amino Acid Variations in the Human Proteome.
Jimin Pei, Nick V Grishin. J Mol Biol 2021
Jimin Pei, Nick V Grishin. J Mol Biol 2021
50
geno5mC: A Database to Explore the Association between Genetic Variation (SNPs) and CpG Methylation in the Human Genome.
C Gómez-Martín, E Aparicio-Puerta, J M Medina, Guillermo Barturen, J L Oliver, M Hackenberg. J Mol Biol 2021
C Gómez-Martín, E Aparicio-Puerta, J M Medina, Guillermo Barturen, J L Oliver, M Hackenberg. J Mol Biol 2021
100
IUPred2A: context-dependent prediction of protein disorder as a function of redox state and protein binding.
Bálint Mészáros, Gábor Erdos, Zsuzsanna Dosztányi. Nucleic Acids Res 2018
Bálint Mészáros, Gábor Erdos, Zsuzsanna Dosztányi. Nucleic Acids Res 2018
50
Membrane proteins follow multiple pathways to the basolateral cell surface in polarized epithelial cells.
Glen A Farr, Michael Hull, Ira Mellman, Michael J Caplan. J Cell Biol 2009
Glen A Farr, Michael Hull, Ira Mellman, Michael J Caplan. J Cell Biol 2009
50
Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm.
I Rigoutsos, A Floratos. Bioinformatics 1998
I Rigoutsos, A Floratos. Bioinformatics 1998
50
Uncovering new aspects of protein interactions through analysis of specificity landscapes in peptide recognition domains.
David Gfeller. FEBS Lett 2012
David Gfeller. FEBS Lett 2012
50
Partial proteolysis improves the identification of the extracellular segments of transmembrane proteins by surface biotinylation.
Tamás Langó, Zoltán Gergő Pataki, Lilla Turiák, András Ács, Julia Kornélia Varga, György Várady, Nóra Kucsma, László Drahos, Gábor E Tusnády. Sci Rep 2020
Tamás Langó, Zoltán Gergő Pataki, Lilla Turiák, András Ács, Julia Kornélia Varga, György Várady, Nóra Kucsma, László Drahos, Gábor E Tusnády. Sci Rep 2020
50
Identification of Extracellular Segments by Mass Spectrometry Improves Topology Prediction of Transmembrane Proteins.
Tamás Langó, Gergely Róna, Éva Hunyadi-Gulyás, Lilla Turiák, Julia Varga, László Dobson, György Várady, László Drahos, Beáta G Vértessy, Katalin F Medzihradszky,[...]. Sci Rep 2017
Tamás Langó, Gergely Róna, Éva Hunyadi-Gulyás, Lilla Turiák, Julia Varga, László Dobson, György Várady, László Drahos, Beáta G Vértessy, Katalin F Medzihradszky,[...]. Sci Rep 2017
50
Trafficking to the apical and basolateral membranes in polarized epithelial cells.
Emily H Stoops, Michael J Caplan. J Am Soc Nephrol 2014
Emily H Stoops, Michael J Caplan. J Am Soc Nephrol 2014
50
Adaptor protein complexes and intracellular transport.
Sang Yoon Park, Xiaoli Guo. Biosci Rep 2014
Sang Yoon Park, Xiaoli Guo. Biosci Rep 2014
50
SignalP 5.0 improves signal peptide predictions using deep neural networks.
José Juan Almagro Armenteros, Konstantinos D Tsirigos, Casper Kaae Sønderby, Thomas Nordahl Petersen, Ole Winther, Søren Brunak, Gunnar von Heijne, Henrik Nielsen. Nat Biotechnol 2019
José Juan Almagro Armenteros, Konstantinos D Tsirigos, Casper Kaae Sønderby, Thomas Nordahl Petersen, Ole Winther, Søren Brunak, Gunnar von Heijne, Henrik Nielsen. Nat Biotechnol 2019
50
Disordered regions in transmembrane proteins.
Gábor E Tusnády, László Dobson, Peter Tompa. Biochim Biophys Acta 2015
Gábor E Tusnády, László Dobson, Peter Tompa. Biochim Biophys Acta 2015
50
DeepLoc: prediction of protein subcellular localization using deep learning.
José Juan Almagro Armenteros, Casper Kaae Sønderby, Søren Kaae Sønderby, Henrik Nielsen, Ole Winther. Bioinformatics 2017
José Juan Almagro Armenteros, Casper Kaae Sønderby, Søren Kaae Sønderby, Henrik Nielsen, Ole Winther. Bioinformatics 2017
50
Polypeptide GalNAc-Ts: from redundancy to specificity.
Matilde de Las Rivas, Erandi Lira-Navarrete, Thomas A Gerken, Ramon Hurtado-Guerrero. Curr Opin Struct Biol 2019
Matilde de Las Rivas, Erandi Lira-Navarrete, Thomas A Gerken, Ramon Hurtado-Guerrero. Curr Opin Struct Biol 2019
50
A novel assay to demonstrate an intersection of the exocytic and endocytic pathways at early endosomes.
V Laird, M Spiess. Exp Cell Res 2000
V Laird, M Spiess. Exp Cell Res 2000
50
A Conserved Motif Provides Binding Specificity to the PP2A-B56 Phosphatase.
Emil Peter Thrane Hertz, Thomas Kruse, Norman E Davey, Blanca López-Méndez, Jón Otti Sigurðsson, Guillermo Montoya, Jesper V Olsen, Jakob Nilsson. Mol Cell 2016
Emil Peter Thrane Hertz, Thomas Kruse, Norman E Davey, Blanca López-Méndez, Jón Otti Sigurðsson, Guillermo Montoya, Jesper V Olsen, Jakob Nilsson. Mol Cell 2016
50
New insights into apical-basal polarization in epithelia.
Amalia Riga, Victoria G Castiglioni, Mike Boxem. Curr Opin Cell Biol 2020
Amalia Riga, Victoria G Castiglioni, Mike Boxem. Curr Opin Cell Biol 2020
50
The O-glycosylated stalk domain is required for apical sorting of neurotrophin receptors in polarized MDCK cells.
C Yeaman, A H Le Gall, A N Baldwin, L Monlauzeur, A Le Bivic, E Rodriguez-Boulan. J Cell Biol 1997
C Yeaman, A H Le Gall, A N Baldwin, L Monlauzeur, A Le Bivic, E Rodriguez-Boulan. J Cell Biol 1997
50
Apical trafficking in epithelial cells: signals, clusters and motors.
Ora A Weisz, Enrique Rodriguez-Boulan. J Cell Sci 2009
Ora A Weisz, Enrique Rodriguez-Boulan. J Cell Sci 2009
50
A transmembrane segment determines the steady-state localization of an ion-transporting adenosine triphosphatase.
L A Dunbar, P Aronson, M J Caplan. J Cell Biol 2000
L A Dunbar, P Aronson, M J Caplan. J Cell Biol 2000
50
From cells to organs: building polarized tissue.
David M Bryant, Keith E Mostov. Nat Rev Mol Cell Biol 2008
David M Bryant, Keith E Mostov. Nat Rev Mol Cell Biol 2008
50
Short linear motifs: ubiquitous and functionally diverse protein interaction modules directing cell regulation.
Kim Van Roey, Bora Uyar, Robert J Weatheritt, Holger Dinkel, Markus Seiler, Aidan Budd, Toby J Gibson, Norman E Davey. Chem Rev 2014
Kim Van Roey, Bora Uyar, Robert J Weatheritt, Holger Dinkel, Markus Seiler, Aidan Budd, Toby J Gibson, Norman E Davey. Chem Rev 2014
50
A Carboxy-Terminal Monoleucine-Based Motif Participates in the Basolateral Targeting of the Na+/I- Symporter.
Mariano Martín, Carlos Pablo Modenutti, Victoria Peyret, Romina Celeste Geysels, Elisabeth Darrouzet, Thierry Pourcher, Ana María Masini-Repiso, Marcelo Adrián Martí, Nancy Carrasco, Juan Pablo Nicola. Endocrinology 2019
Mariano Martín, Carlos Pablo Modenutti, Victoria Peyret, Romina Celeste Geysels, Elisabeth Darrouzet, Thierry Pourcher, Ana María Masini-Repiso, Marcelo Adrián Martí, Nancy Carrasco, Juan Pablo Nicola. Endocrinology 2019
50
Covalently modified carboxyl side chains on cell surface leads to a novel method toward topology analysis of transmembrane proteins.
Anna Müller, Tamás Langó, Lilla Turiák, András Ács, György Várady, Nóra Kucsma, László Drahos, Gábor E Tusnády. Sci Rep 2019
Anna Müller, Tamás Langó, Lilla Turiák, András Ács, György Várady, Nóra Kucsma, László Drahos, Gábor E Tusnády. Sci Rep 2019
50
N-glycans as apical targeting signals in polarized epithelial cells.
Paula Urquhart, Susan Pang, Nigel M Hooper. Biochem Soc Symp 2005
Paula Urquhart, Susan Pang, Nigel M Hooper. Biochem Soc Symp 2005
50
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.