A citation-based method for searching scientific literature

Luke R Bonser, Kyung Duk Koh, Kristina Johansson, Semil P Choksi, Dan Cheng, Leqian Liu, Dingyuan I Sun, Lorna T Zlock, Walter L Eckalbar, Walter E Finkbeiner, David J Erle. Am J Respir Cell Mol Biol 2021
Times Cited: 13







List of co-cited articles
187 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor.
Markus Hoffmann, Hannah Kleine-Weber, Simon Schroeder, Nadine Krüger, Tanja Herrler, Sandra Erichsen, Tobias S Schiergens, Georg Herrler, Nai-Huei Wu, Andreas Nitsche,[...]. Cell 2020
61

Basal cells as stem cells of the mouse trachea and human airway epithelium.
Jason R Rock, Mark W Onaitis, Emma L Rawlins, Yun Lu, Cheryl P Clark, Yan Xue, Scott H Randell, Brigid L M Hogan. Proc Natl Acad Sci U S A 2009
897
38

A cellular census of human lungs identifies novel cell states in health and in asthma.
Felipe A Vieira Braga, Gozde Kar, Marijn Berg, Orestes A Carpaij, Krzysztof Polanski, Lukas M Simon, Sharon Brouwer, Tomás Gomes, Laura Hesse, Jian Jiang,[...]. Nat Med 2019
291
38

Morphogenesis and cytopathic effect of SARS-CoV-2 infection in human airway epithelial cells.
Na Zhu, Wenling Wang, Zhidong Liu, Chaoyang Liang, Wen Wang, Fei Ye, Baoying Huang, Li Zhao, Huijuan Wang, Weimin Zhou,[...]. Nat Commun 2020
130
30

SARS-CoV-2 Reverse Genetics Reveals a Variable Infection Gradient in the Respiratory Tract.
Yixuan J Hou, Kenichi Okuda, Caitlin E Edwards, David R Martinez, Takanori Asakura, Kenneth H Dinnon, Takafumi Kato, Rhianna E Lee, Boyd L Yount, Teresa M Mascenik,[...]. Cell 2020
673
30

Efficient RNP-directed Human Gene Targeting Reveals SPDEF Is Required for IL-13-induced Mucostasis.
Kyung Duk Koh, Sana Siddiqui, Dan Cheng, Luke R Bonser, Dingyuan I Sun, Lorna T Zlock, Walter E Finkbeiner, Prescott G Woodruff, David J Erle. Am J Respir Cell Mol Biol 2020
19
30

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
30

Epithelial tethering of MUC5AC-rich mucus impairs mucociliary transport in asthma.
Luke R Bonser, Lorna Zlock, Walter Finkbeiner, David J Erle. J Clin Invest 2016
102
30

Airway epithelial miRNA expression is altered in asthma.
Owen D Solberg, Edwin J Ostrin, Michael I Love, Jeffrey C Peng, Nirav R Bhakta, Lydia Hou, Christine Nguyen, Margaret Solon, Cindy Nguyen, Andrea J Barczak,[...]. Am J Respir Crit Care Med 2012
178
30

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
23

Identification of Candidate COVID-19 Therapeutics using hPSC-derived Lung Organoids.
Yuling Han, Liuliu Yang, Xiaohua Duan, Fuyu Duan, Benjamin E Nilsson-Payant, Tomer M Yaron, Pengfei Wang, Xuming Tang, Tuo Zhang, Zeping Zhao,[...]. bioRxiv 2020
57
23

COVID-19 pulmonary pathology: a multi-institutional autopsy cohort from Italy and New York City.
Alain C Borczuk, Steven P Salvatore, Surya V Seshan, Sanjay S Patel, James B Bussel, Maria Mostyka, Sarah Elsoukkary, Bing He, Claudia Del Vecchio, Francesco Fortarezza,[...]. Mod Pathol 2020
198
23

Differentiation of Human Pluripotent Stem Cells into Functional Lung Alveolar Epithelial Cells.
Anjali Jacob, Michael Morley, Finn Hawkins, Katherine B McCauley, J C Jean, Hillary Heins, Cheng-Lun Na, Timothy E Weaver, Marall Vedaie, Killian Hurley,[...]. Cell Stem Cell 2017
205
23

Progenitor identification and SARS-CoV-2 infection in human distal lung organoids.
Ameen A Salahudeen, Shannon S Choi, Arjun Rustagi, Junjie Zhu, Vincent van Unen, Sean M de la O, Ryan A Flynn, Mar Margalef-Català, António J M Santos, Jihang Ju,[...]. Nature 2020
103
23

Long-term expanding human airway organoids for disease modeling.
Norman Sachs, Angelos Papaspyropoulos, Domenique D Zomer-van Ommen, Inha Heo, Lena Böttinger, Dymph Klay, Fleur Weeber, Guizela Huelsz-Prince, Nino Iakobachvili, Gimano D Amatngalim,[...]. EMBO J 2019
308
23

An orally bioavailable broad-spectrum antiviral inhibits SARS-CoV-2 in human airway epithelial cell cultures and multiple coronaviruses in mice.
Timothy P Sheahan, Amy C Sims, Shuntai Zhou, Rachel L Graham, Andrea J Pruijssers, Maria L Agostini, Sarah R Leist, Alexandra Schäfer, Kenneth H Dinnon, Laura J Stevens,[...]. Sci Transl Med 2020
474
23

Epithelial ciliated beating cells essential for ex vivo ALI culture growth.
Delphine Gras, Aurélie Petit, Jérémy Charriot, Lucie Knabe, Khuder Alagha, Anne Sophie Gamez, Céline Garulli, Arnaud Bourdin, Pascal Chanez, Nicolas Molinari,[...]. BMC Pulm Med 2017
18
23

SARS-CoV-2 productively infects human gut enterocytes.
Mart M Lamers, Joep Beumer, Jelte van der Vaart, Kèvin Knoops, Jens Puschhof, Tim I Breugem, Raimond B G Ravelli, J Paul van Schayck, Anna Z Mykytyn, Hans Q Duimel,[...]. Science 2020
822
23

SARS-coronavirus replication is supported by a reticulovesicular network of modified endoplasmic reticulum.
Kèvin Knoops, Marjolein Kikkert, Sjoerd H E van den Worm, Jessika C Zevenhoven-Dobbe, Yvonne van der Meer, Abraham J Koster, A Mieke Mommaas, Eric J Snijder. PLoS Biol 2008
615
23

Generation of lung organoids from human pluripotent stem cells in vitro.
Alyssa J Miller, Briana R Dye, Daysha Ferrer-Torres, David R Hill, Arend W Overeem, Lonnie D Shea, Jason R Spence. Nat Protoc 2019
131
23

ACE2 receptor expression and severe acute respiratory syndrome coronavirus infection depend on differentiation of human airway epithelia.
Hong Peng Jia, Dwight C Look, Lei Shi, Melissa Hickey, Lecia Pewe, Jason Netland, Michael Farzan, Christine Wohlford-Lenane, Stanley Perlman, Paul B McCray. J Virol 2005
502
23

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
23

Replication of Severe Acute Respiratory Syndrome Coronavirus 2 in Human Respiratory Epithelium.
Aleksandra Milewska, Anna Kula-Pacurar, Jakub Wadas, Agnieszka Suder, Artur Szczepanski, Agnieszka Dabrowska, Katarzyna Owczarek, Alessandro Marcello, Marek Ochman, Tomasz Stacel,[...]. J Virol 2020
36
23

Longitudinal analyses reveal immunological misfiring in severe COVID-19.
Carolina Lucas, Patrick Wong, Jon Klein, Tiago B R Castro, Julio Silva, Maria Sundaram, Mallory K Ellingson, Tianyang Mao, Ji Eun Oh, Benjamin Israelow,[...]. Nature 2020
866
23

COVID-19 severity correlates with airway epithelium-immune cell interactions identified by single-cell analysis.
Robert Lorenz Chua, Soeren Lukassen, Saskia Trump, Bianca P Hennig, Daniel Wendisch, Fabian Pott, Olivia Debnath, Loreen Thürmann, Florian Kurth, Maria Theresa Völker,[...]. Nat Biotechnol 2020
445
23

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues.
Carly G K Ziegler, Samuel J Allon, Sarah K Nyquist, Ian M Mbano, Vincent N Miao, Constantine N Tzouanas, Yuming Cao, Ashraf S Yousif, Julia Bals, Blake M Hauser,[...]. Cell 2020
23

A single-cell atlas of the airway epithelium reveals the CFTR-rich pulmonary ionocyte.
Lindsey W Plasschaert, Rapolas Žilionis, Rayman Choo-Wing, Virginia Savova, Judith Knehr, Guglielmo Roma, Allon M Klein, Aron B Jaffe. Nature 2018
404
23

Impaired type I interferon activity and inflammatory responses in severe COVID-19 patients.
Jérôme Hadjadj, Nader Yatim, Laura Barnabei, Aurélien Corneau, Jeremy Boussier, Nikaïa Smith, Hélène Péré, Bruno Charbit, Vincent Bondet, Camille Chenevier-Gobeaux,[...]. Science 2020
23

A SARS-CoV-2 protein interaction map reveals targets for drug repurposing.
David E Gordon, Gwendolyn M Jang, Mehdi Bouhaddou, Jiewei Xu, Kirsten Obernier, Kris M White, Matthew J O'Meara, Veronica V Rezelj, Jeffrey Z Guo, Danielle L Swaney,[...]. Nature 2020
23

Global absence and targeting of protective immune states in severe COVID-19.
Alexis J Combes, Tristan Courau, Nicholas F Kuhn, Kenneth H Hu, Arja Ray, William S Chen, Nayvin W Chew, Simon J Cleary, Divyashree Kushnoor, Gabriella C Reeder,[...]. Nature 2021
92
23

Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19.
Yapeng Su, Daniel Chen, Dan Yuan, Christopher Lausted, Jongchan Choi, Chengzhen L Dai, Valentin Voillet, Venkata R Duvvuri, Kelsey Scherler, Pamela Troisch,[...]. Cell 2020
167
23

Genome-wide profiling identifies epithelial cell genes associated with asthma and with treatment response to corticosteroids.
Prescott G Woodruff, Homer A Boushey, Gregory M Dolganov, Chris S Barker, Yee Hwa Yang, Samantha Donnelly, Almut Ellwanger, Sukhvinder S Sidhu, Trang P Dao-Pick, Carlos Pantoja,[...]. Proc Natl Acad Sci U S A 2007
593
23

T-helper type 2-driven inflammation defines major subphenotypes of asthma.
Prescott G Woodruff, Barmak Modrek, David F Choy, Guiquan Jia, Alexander R Abbas, Almut Ellwanger, Laura L Koth, Joseph R Arron, John V Fahy. Am J Respir Crit Care Med 2009
23

Autoantibodies against type I IFNs in patients with life-threatening COVID-19.
Paul Bastard, Lindsey B Rosen, Qian Zhang, Eleftherios Michailidis, Hans-Heinrich Hoffmann, Yu Zhang, Karim Dorgham, Quentin Philippot, Jérémie Rosain, Vivien Béziat,[...]. Science 2020
23

A novel ACE2 isoform is expressed in human respiratory epithelia and is upregulated in response to interferons and RNA respiratory virus infection.
Cornelia Blume, Claire L Jackson, Cosma Mirella Spalluto, Jelmer Legebeke, Liliya Nazlamova, Franco Conforti, Jeanne-Marie Perotin, Martin Frank, John Butler, Max Crispin,[...]. Nat Genet 2021
55
23

Allergic inflammatory memory in human respiratory epithelial progenitor cells.
Jose Ordovas-Montanes, Daniel F Dwyer, Sarah K Nyquist, Kathleen M Buchheit, Marko Vukovic, Chaarushena Deb, Marc H Wadsworth, Travis K Hughes, Samuel W Kazer, Eri Yoshimoto,[...]. Nature 2018
179
23

A revised airway epithelial hierarchy includes CFTR-expressing ionocytes.
Daniel T Montoro, Adam L Haber, Moshe Biton, Vladimir Vinarsky, Brian Lin, Susan E Birket, Feng Yuan, Sijia Chen, Hui Min Leung, Jorge Villoria,[...]. Nature 2018
453
23

A molecular cell atlas of the human lung from single-cell RNA sequencing.
Kyle J Travaglini, Ahmad N Nabhan, Lolita Penland, Rahul Sinha, Astrid Gillich, Rene V Sit, Stephen Chang, Stephanie D Conley, Yasuo Mori, Jun Seita,[...]. Nature 2020
278
23

Two distinct immunopathological profiles in autopsy lungs of COVID-19.
Ronny Nienhold, Yari Ciani, Viktor H Koelzer, Alexandar Tzankov, Jasmin D Haslbauer, Thomas Menter, Nathalie Schwab, Maurice Henkel, Angela Frank, Veronika Zsikla,[...]. Nat Commun 2020
133
15

Claudins: Gatekeepers of lung epithelial function.
Barbara Schlingmann, Samuel A Molina, Michael Koval. Semin Cell Dev Biol 2015
99
15

A critical role for fibroblast growth factor-7 during early alveolar formation in the neonatal rat.
Sanna Padela, Man Yi, Judy Cabacungan, Samuel Shek, Rosetta Belcastro, Azhar Masood, Robert P Jankov, A Keith Tanswell. Pediatr Res 2008
18
15


CDX2 as a Prognostic Biomarker in Stage II and Stage III Colon Cancer.
Piero Dalerba, Debashis Sahoo, Soonmyung Paik, Xiangqian Guo, Greg Yothers, Nan Song, Nate Wilcox-Fogel, Erna Forgó, Pradeep S Rajendran, Stephen P Miranda,[...]. N Engl J Med 2016
277
15

Single-Cell RNA Expression Profiling of ACE2, the Receptor of SARS-CoV-2.
Yu Zhao, Zixian Zhao, Yujia Wang, Yueqing Zhou, Yu Ma, Wei Zuo. Am J Respir Crit Care Med 2020
462
15

The stress polarity signaling (SPS) pathway serves as a marker and a target in the leaky gut barrier: implications in aging and cancer.
Pradipta Ghosh, Lee Swanson, Ibrahim M Sayed, Yash Mittal, Blaze B Lim, Stella-Rita Ibeawuchi, Marc Foretz, Benoit Viollet, Debashis Sahoo, Soumita Das. Life Sci Alliance 2020
15
15

Three differentiation states risk-stratify bladder cancer into distinct subtypes.
Jens-Peter Volkmer, Debashis Sahoo, Robert K Chin, Philip Levy Ho, Chad Tang, Antonina V Kurtova, Stephen B Willingham, Senthil K Pazhanisamy, Humberto Contreras-Trujillo, Theresa A Storm,[...]. Proc Natl Acad Sci U S A 2012
171
15

Influenza A viruses target type II pneumocytes in the human lung.
Viola K Weinheimer, Anne Becher, Mario Tönnies, Gudrun Holland, Jessica Knepper, Torsten T Bauer, Paul Schneider, Jens Neudecker, Jens C Rückert, Kolja Szymanski,[...]. J Infect Dis 2012
102
15


In vitro generation of human pluripotent stem cell derived lung organoids.
Briana R Dye, David R Hill, Michael A H Ferguson, Yu-Hwai Tsai, Melinda S Nagy, Rachel Dyal, James M Wells, Christopher N Mayhew, Roy Nattiv, Ophir D Klein,[...]. Elife 2015
402
15



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.