Muhammad Tahir Ul Qamar, Xitong Zhu, Muhammad Sarwar Khan, Feng Xing, Ling-Ling Chen. Plant Genome 2020
Times Cited: 11
Times Cited: 11
Times Cited
Times Co-cited
Similarity
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome".
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How the pan-genome is changing crop genomics and improvement.
Rafael Della Coletta, Yinjie Qiu, Shujun Ou, Matthew B Hufford, Candice N Hirsch. Genome Biol 2021
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The immune epitope database (IEDB) 3.0.
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GalaxyRefine: Protein structure refinement driven by side-chain repacking.
Lim Heo, Hahnbeom Park, Chaok Seok. Nucleic Acids Res 2013
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Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J Wolfson. Nucleic Acids Res 2005
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BPGA- an ultra-fast pan-genome analysis pipeline.
Narendrakumar M Chaudhari, Vinod Kumar Gupta, Chitra Dutta. Sci Rep 2016
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Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins.
Douglas B Craig, Alan A Dombkowski. BMC Bioinformatics 2013
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Irini A Doytchinova, Darren R Flower. BMC Bioinformatics 2007
Irini A Doytchinova, Darren R Flower. BMC Bioinformatics 2007
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Pan-genome analysis of 33 genetically diverse rice accessions reveals hidden genomic variations.
Peng Qin, Hongwei Lu, Huilong Du, Hao Wang, Weilan Chen, Zhuo Chen, Qiang He, Shujun Ou, Hongyu Zhang, Xuanzhao Li,[...]. Cell 2021
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Super-Pangenome by Integrating the Wild Side of a Species for Accelerated Crop Improvement.
Aamir W Khan, Vanika Garg, Manish Roorkiwal, Agnieszka A Golicz, David Edwards, Rajeev K Varshney. Trends Plant Sci 2020
Aamir W Khan, Vanika Garg, Manish Roorkiwal, Agnieszka A Golicz, David Edwards, Rajeev K Varshney. Trends Plant Sci 2020
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The barley pan-genome reveals the hidden legacy of mutation breeding.
Murukarthick Jayakodi, Sudharsan Padmarasu, Georg Haberer, Venkata Suresh Bonthala, Heidrun Gundlach, Cécile Monat, Thomas Lux, Nadia Kamal, Daniel Lang, Axel Himmelbach,[...]. Nature 2020
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Towards plant pangenomics.
Agnieszka A Golicz, Jacqueline Batley, David Edwards. Plant Biotechnol J 2016
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Eight high-quality genomes reveal pan-genome architecture and ecotype differentiation of Brassica napus.
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Pan-Genome of Wild and Cultivated Soybeans.
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The tomato pan-genome uncovers new genes and a rare allele regulating fruit flavor.
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Exploring and Exploiting Pan-genomics for Crop Improvement.
Yongfu Tao, Xianrong Zhao, Emma Mace, Robert Henry, David Jordan. Mol Plant 2019
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Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.
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The pangenome of an agronomically important crop plant Brassica oleracea.
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ppsPCP: a plant presence/absence variants scanner and pan-genome construction pipeline.
Muhammad Tahir Ul Qamar, Xitong Zhu, Feng Xing, Ling-Ling Chen. Bioinformatics 2019
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Designing multi-epitope vaccine against Staphylococcus aureus by employing subtractive proteomics, reverse vaccinology and immuno-informatics approaches.
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Muhammad Tahir Ul Qamar, Sajjad Ahmad, Israr Fatima, Faisal Ahmad, Farah Shahid, Anam Naz, Sumra Wajid Abbasi, Abbas Khan, Muhammad Usman Mirza, Usman Ali Ashfaq,[...]. Comput Biol Med 2021
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UCSF Chimera--a visualization system for exploratory research and analysis.
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Computational immunology meets bioinformatics: the use of prediction tools for molecular binding in the simulation of the immune system.
Nicolas Rapin, Ole Lund, Massimo Bernaschi, Filippo Castiglione. PLoS One 2010
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Secreted protein prediction system combining CJ-SPHMM, TMHMM, and PSORT.
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Yunjia Chen, Peng Yu, Jingchu Luo, Ying Jiang. Mamm Genome 2003
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Proteome-wide screening for designing a multi-epitope vaccine against emerging pathogen Elizabethkingia anophelis using immunoinformatic approaches.
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Identification of putative vaccine candidates against Helicobacter pylori exploiting exoproteome and secretome: a reverse vaccinology based approach.
Anam Naz, Faryal Mehwish Awan, Ayesha Obaid, Syed Aun Muhammad, Rehan Zafar Paracha, Jamil Ahmad, Amjad Ali. Infect Genet Evol 2015
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Immunoinformatics-Aided Design and Evaluation of a Potential Multi-Epitope Vaccine against Klebsiella Pneumoniae.
Hamza Arshad Dar, Tahreem Zaheer, Muhammad Shehroz, Nimat Ullah, Kanwal Naz, Syed Aun Muhammad, Tianyu Zhang, Amjad Ali. Vaccines (Basel) 2019
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In silico approach for predicting toxicity of peptides and proteins.
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Pan-genome analysis of human gastric pathogen H. pylori: comparative genomics and pathogenomics approaches to identify regions associated with pathogenicity and prediction of potential core therapeutic targets.
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Global Contributors to Antibiotic Resistance.
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Reverse vaccinology.
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Combating tigecycline resistant Acinetobacter baumannii: A leap forward towards multi-epitope based vaccine discovery.
Sajjad Ahmad, Kara E Ranaghan, Syed Sikander Azam. Eur J Pharm Sci 2019
Sajjad Ahmad, Kara E Ranaghan, Syed Sikander Azam. Eur J Pharm Sci 2019
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PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes.
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PTRAJ and CPPTRAJ: Software for Processing and Analysis of Molecular Dynamics Trajectory Data.
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MMPBSA.py: An Efficient Program for End-State Free Energy Calculations.
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Vaccinomics to design a novel single chimeric subunit vaccine for broad-spectrum immunological applications targeting nosocomial Enterobacteriaceae pathogens.
Saba Ismail, Sajjad Ahmad, Syed Sikander Azam. Eur J Pharm Sci 2020
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Genome-based vaccine development: a short cut for the future.
Danilo Gomes Moriel, Maria Scarselli, Laura Serino, Marirosa Mora, Rino Rappuoli, Vega Masignani. Hum Vaccin 2008
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The antibiotic resistance crisis: part 2: management strategies and new agents.
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Pan-vaccinomics approach towards a universal vaccine candidate against WHO priority pathogens to address growing global antibiotic resistance.
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Two years into reverse vaccinology.
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Galaxy: a platform for interactive large-scale genome analysis.
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Subtractive genome analysis for in silico identification and characterization of novel drug targets in Streptococcus pneumonia strain JJA.
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Transposable elements contribute to activation of maize genes in response to abiotic stress.
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.