A citation-based method for searching scientific literature

William G Bain, Hernán F Peñaloza, Mark S Ladinsky, Rick van der Geest, Mara Sullivan, Mark Ross, Georgios D Kitsios, Barbara A Methé, Bryan J McVerry, Alison Morris, Alan M Watson, Simon C Watkins, Claudette M St Croix, Donna B Stolz, Pamela J Bjorkman, Janet S Lee. Chest 2021
Times Cited: 4







List of co-cited articles
46 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Clinical Characteristics of Coronavirus Disease 2019 in China.
Wei-Jie Guan, Zheng-Yi Ni, Yu Hu, Wen-Hua Liang, Chun-Quan Ou, Jian-Xing He, Lei Liu, Hong Shan, Chun-Liang Lei, David S C Hui,[...]. N Engl J Med 2020
75

Circuits between infected macrophages and T cells in SARS-CoV-2 pneumonia.
Rogan A Grant, Luisa Morales-Nebreda, Nikolay S Markov, Suchitra Swaminathan, Melissa Querrey, Estefany R Guzman, Darryl A Abbott, Helen K Donnelly, Alvaro Donayre, Isaac A Goldberg,[...]. Nature 2021
134
75

Severe acute respiratory syndrome and the innate immune responses: modulation of effector cell function without productive infection.
Chien-Te K Tseng, Lucy A Perrone, Hongbing Zhu, Shinji Makino, Clarence J Peters. J Immunol 2005
102
50

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
50

Cell Hashing with barcoded antibodies enables multiplexing and doublet detection for single cell genomics.
Marlon Stoeckius, Shiwei Zheng, Brian Houck-Loomis, Stephanie Hao, Bertrand Z Yeung, William M Mauck, Peter Smibert, Rahul Satija. Genome Biol 2018
209
50

pROC: an open-source package for R and S+ to analyze and compare ROC curves.
Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez, Markus Müller. BMC Bioinformatics 2011
50

Dengue virus infection induces expansion of a CD14(+)CD16(+) monocyte population that stimulates plasmablast differentiation.
Marcin Kwissa, Helder I Nakaya, Nattawat Onlamoon, Jens Wrammert, Francois Villinger, Guey Chuen Perng, Sutee Yoksan, Kovit Pattanapanyasat, Kulkanya Chokephaibulkit, Rafi Ahmed,[...]. Cell Host Microbe 2014
133
50

Comprehensive mapping of immune perturbations associated with severe COVID-19.
Leticia Kuri-Cervantes, M Betina Pampena, Wenzhao Meng, Aaron M Rosenfeld, Caroline A G Ittner, Ariel R Weisman, Roseline S Agyekum, Divij Mathew, Amy E Baxter, Laura A Vella,[...]. Sci Immunol 2020
298
50

Cytokine elevation in severe and critical COVID-19: a rapid systematic review, meta-analysis, and comparison with other inflammatory syndromes.
Daniel E Leisman, Lukas Ronner, Rachel Pinotti, Matthew D Taylor, Pratik Sinha, Carolyn S Calfee, Alexandre V Hirayama, Fiore Mastroiani, Cameron J Turtle, Michael O Harhay,[...]. Lancet Respir Med 2020
274
50

SCENIC: single-cell regulatory network inference and clustering.
Sara Aibar, Carmen Bravo González-Blas, Thomas Moerman, Vân Anh Huynh-Thu, Hana Imrichova, Gert Hulselmans, Florian Rambow, Jean-Christophe Marine, Pierre Geurts, Jan Aerts,[...]. Nat Methods 2017
698
50

Deep immune profiling of COVID-19 patients reveals distinct immunotypes with therapeutic implications.
Divij Mathew, Josephine R Giles, Amy E Baxter, Derek A Oldridge, Allison R Greenplate, Jennifer E Wu, Cécile Alanio, Leticia Kuri-Cervantes, M Betina Pampena, Kurt D'Andrea,[...]. Science 2020
583
50

Pathogenic T-cells and inflammatory monocytes incite inflammatory storms in severe COVID-19 patients.
Yonggang Zhou, Binqing Fu, Xiaohu Zheng, Dongsheng Wang, Changcheng Zhao, Yingjie Qi, Rui Sun, Zhigang Tian, Xiaoling Xu, Haiming Wei. Natl Sci Rev 2020
427
50

Genetic Variants of SARS-CoV-2-What Do They Mean?
Adam S Lauring, Emma B Hodcroft. JAMA 2021
184
50

Dimensionality reduction for visualizing single-cell data using UMAP.
Etienne Becht, Leland McInnes, John Healy, Charles-Antoine Dutertre, Immanuel W H Kwok, Lai Guan Ng, Florent Ginhoux, Evan W Newell. Nat Biotechnol 2018
918
50

Immune Landscape of Viral- and Carcinogen-Driven Head and Neck Cancer.
Anthony R Cillo, Cornelius H L Kürten, Tracy Tabib, Zengbiao Qi, Sayali Onkar, Ting Wang, Angen Liu, Umamaheswar Duvvuri, Seungwon Kim, Ryan J Soose,[...]. Immunity 2020
98
50


Dexamethasone in Hospitalized Patients with Covid-19.
Peter Horby, Wei Shen Lim, Jonathan R Emberson, Marion Mafham, Jennifer L Bell, Louise Linsell, Natalie Staplin, Christopher Brightling, Andrew Ustianowski, Einas Elmahi,[...]. N Engl J Med 2021
50

COVID-19 versus Non-COVID-19 Acute Respiratory Distress Syndrome: Comparison of Demographics, Physiologic Parameters, Inflammatory Biomarkers, and Clinical Outcomes.
William Bain, Haopu Yang, Faraaz Ali Shah, Tomeka Suber, Callie Drohan, Nameer Al-Yousif, Rebecca S DeSensi, Nicole Bensen, Caitlin Schaefer, Brian R Rosborough,[...]. Ann Am Thorac Soc 2021
15
50

Longitudinal analyses reveal immunological misfiring in severe COVID-19.
Carolina Lucas, Patrick Wong, Jon Klein, Tiago B R Castro, Julio Silva, Maria Sundaram, Mallory K Ellingson, Tianyang Mao, Ji Eun Oh, Benjamin Israelow,[...]. Nature 2020
655
50

Prothrombotic autoantibodies in serum from patients hospitalized with COVID-19.
Yu Zuo, Shanea K Estes, Ramadan A Ali, Alex A Gandhi, Srilakshmi Yalavarthi, Hui Shi, Gautam Sule, Kelsey Gockman, Jacqueline A Madison, Melanie Zuo,[...]. Sci Transl Med 2020
196
50

Safety and Efficacy of the BNT162b2 mRNA Covid-19 Vaccine.
Fernando P Polack, Stephen J Thomas, Nicholas Kitchin, Judith Absalon, Alejandra Gurtman, Stephen Lockhart, John L Perez, Gonzalo Pérez Marc, Edson D Moreira, Cristiano Zerbini,[...]. N Engl J Med 2020
50

Multiplex cytokine profile from dengue patients: MIP-1beta and IFN-gamma as predictive factors for severity.
Fernando A Bozza, Oswaldo G Cruz, Sonia M O Zagne, Elzinandes L Azeredo, Rita M R Nogueira, Edson F Assis, Patricia T Bozza, Claire F Kubelka. BMC Infect Dis 2008
225
50

An inflammatory cytokine signature predicts COVID-19 severity and survival.
Diane Marie Del Valle, Seunghee Kim-Schulze, Hsin-Hui Huang, Noam D Beckmann, Sharon Nirenberg, Bo Wang, Yonit Lavin, Talia H Swartz, Deepu Madduri, Aryeh Stock,[...]. Nat Med 2020
607
50

Single cell RNA sequencing identifies an early monocyte gene signature in acute respiratory distress syndrome.
Yale Jiang, Brian R Rosborough, Jie Chen, Sudipta Das, Georgios D Kitsios, Bryan J McVerry, Rama K Mallampalli, Janet S Lee, Anuradha Ray, Wei Chen,[...]. JCI Insight 2020
10
50

Mouse model of SARS-CoV-2 reveals inflammatory role of type I interferon signaling.
Benjamin Israelow, Eric Song, Tianyang Mao, Peiwen Lu, Amit Meir, Feimei Liu, Mia Madel Alfajaro, Jin Wei, Huiping Dong, Robert J Homer,[...]. J Exp Med 2020
162
50

Haematological characteristics and risk factors in the classification and prognosis evaluation of COVID-19: a retrospective cohort study.
Danying Liao, Fen Zhou, Lili Luo, Min Xu, Hongbo Wang, Jiahong Xia, Yong Gao, Liqiong Cai, Zhihui Wang, Ping Yin,[...]. Lancet Haematol 2020
158
50

Active replication of Middle East respiratory syndrome coronavirus and aberrant induction of inflammatory cytokines and chemokines in human macrophages: implications for pathogenesis.
Jie Zhou, Hin Chu, Cun Li, Bosco Ho-Yin Wong, Zhong-Shan Cheng, Vincent Kwok-Man Poon, Tianhao Sun, Candy Choi-Yi Lau, Kenneth Kak-Yuen Wong, Jimmy Yu-Wai Chan,[...]. J Infect Dis 2014
257
50

Immunophenotyping of COVID-19 and influenza highlights the role of type I interferons in development of severe COVID-19.
Jeong Seok Lee, Seongwan Park, Hye Won Jeong, Jin Young Ahn, Seong Jin Choi, Hoyoung Lee, Baekgyu Choi, Su Kyung Nam, Moa Sa, Ji-Soo Kwon,[...]. Sci Immunol 2020
282
50

A scalable SCENIC workflow for single-cell gene regulatory network analysis.
Bram Van de Sande, Christopher Flerin, Kristofer Davie, Maxime De Waegeneer, Gert Hulselmans, Sara Aibar, Ruth Seurinck, Wouter Saelens, Robrecht Cannoodt, Quentin Rouchon,[...]. Nat Protoc 2020
48
50

Repurposed Antiviral Drugs for Covid-19 - Interim WHO Solidarity Trial Results.
Hongchao Pan, Richard Peto, Ana-Maria Henao-Restrepo, Marie-Pierre Preziosi, Vasee Sathiyamoorthy, Quarraisha Abdool Karim, Marissa M Alejandria, César Hernández García, Marie-Paule Kieny, Reza Malekzadeh,[...]. N Engl J Med 2021
839
50

Eosinopenia and elevated C-reactive protein facilitate triage of COVID-19 patients in fever clinic: A retrospective case-control study.
Qilin Li, Xiuli Ding, Geqing Xia, Heng-Gui Chen, Fenghua Chen, Zhi Geng, Luming Xu, Shijun Lei, An Pan, Lin Wang,[...]. EClinicalMedicine 2020
68
50

Type I interferon-dependent CCL4 is induced by a cGAS/STING pathway that bypasses viral inhibition and protects infected tissue, independent of viral burden.
Nikhil J Parekh, Tracy E Krouse, Irene E Reider, Ryan P Hobbs, Brian M Ward, Christopher C Norbury. PLoS Pathog 2019
7
50

Neuropilin-1 facilitates SARS-CoV-2 cell entry and infectivity.
Ludovico Cantuti-Castelvetri, Ravi Ojha, Liliana D Pedro, Minou Djannatian, Jonas Franz, Suvi Kuivanen, Franziska van der Meer, Katri Kallio, Tuğberk Kaya, Maria Anastasina,[...]. Science 2020
538
50

Temporal dynamics of inflammatory cytokines/chemokines during sofosbuvir and ribavirin therapy for genotype 2 and 3 hepatitis C infection.
Aaron F Carlin, Paula Aristizabal, Qinghua Song, Huan Wang, Matthew S Paulson, Luisa M Stamm, Robert T Schooley, David L Wyles. Hepatology 2015
34
50

Neuropilin-1 is a host factor for SARS-CoV-2 infection.
James L Daly, Boris Simonetti, Katja Klein, Kai-En Chen, Maia Kavanagh Williamson, Carlos Antón-Plágaro, Deborah K Shoemark, Lorena Simón-Gracia, Michael Bauer, Reka Hollandi,[...]. Science 2020
386
50

Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19.
Daniel Blanco-Melo, Benjamin E Nilsson-Payant, Wen-Chun Liu, Skyler Uhl, Daisy Hoagland, Rasmus Møller, Tristan X Jordan, Kohei Oishi, Maryline Panis, David Sachs,[...]. Cell 2020
50

A dynamic COVID-19 immune signature includes associations with poor prognosis.
Adam G Laing, Anna Lorenc, Irene Del Molino Del Barrio, Abhishek Das, Matthew Fish, Leticia Monin, Miguel Muñoz-Ruiz, Duncan R McKenzie, Thomas S Hayday, Isaac Francos-Quijorna,[...]. Nat Med 2020
325
50

SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues.
Carly G K Ziegler, Samuel J Allon, Sarah K Nyquist, Ian M Mbano, Vincent N Miao, Constantine N Tzouanas, Yuming Cao, Ashraf S Yousif, Julia Bals, Blake M Hauser,[...]. Cell 2020
50

Inborn errors of type I IFN immunity in patients with life-threatening COVID-19.
Qian Zhang, Paul Bastard, Zhiyong Liu, Jérémie Le Pen, Marcela Moncada-Velez, Jie Chen, Masato Ogishi, Ira K D Sabli, Stephanie Hodeib, Cecilia Korol,[...]. Science 2020
755
50

Epidemiology, clinical course, and outcomes of critically ill adults with COVID-19 in New York City: a prospective cohort study.
Matthew J Cummings, Matthew R Baldwin, Darryl Abrams, Samuel D Jacobson, Benjamin J Meyer, Elizabeth M Balough, Justin G Aaron, Jan Claassen, LeRoy E Rabbani, Jonathan Hastie,[...]. Lancet 2020
931
50

Type I and III interferons disrupt lung epithelial repair during recovery from viral infection.
Jack Major, Stefania Crotta, Miriam Llorian, Teresa M McCabe, Hans Henrik Gad, Simon L Priestnall, Rune Hartmann, Andreas Wack. Science 2020
115
50

Autoantibodies against type I IFNs in patients with life-threatening COVID-19.
Paul Bastard, Lindsey B Rosen, Qian Zhang, Eleftherios Michailidis, Hans-Heinrich Hoffmann, Yu Zhang, Karim Dorgham, Quentin Philippot, Jérémie Rosain, Vivien Béziat,[...]. Science 2020
821
50

Association Between Administration of Systemic Corticosteroids and Mortality Among Critically Ill Patients With COVID-19: A Meta-analysis.
Jonathan A C Sterne, Srinivas Murthy, Janet V Diaz, Arthur S Slutsky, Jesús Villar, Derek C Angus, Djillali Annane, Luciano Cesar Pontes Azevedo, Otavio Berwanger, Alexandre B Cavalcanti,[...]. JAMA 2020
835
50

Complement and tissue factor-enriched neutrophil extracellular traps are key drivers in COVID-19 immunothrombosis.
Panagiotis Skendros, Alexandros Mitsios, Akrivi Chrysanthopoulou, Dimitrios C Mastellos, Simeon Metallidis, Petros Rafailidis, Maria Ntinopoulou, Eleni Sertaridou, Victoria Tsironidou, Christina Tsigalou,[...]. J Clin Invest 2020
199
50

Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19.
Mingfeng Liao, Yang Liu, Jing Yuan, Yanling Wen, Gang Xu, Juanjuan Zhao, Lin Cheng, Jinxiu Li, Xin Wang, Fuxiang Wang,[...]. Nat Med 2020
899
50

Severe COVID-19 Is Marked by a Dysregulated Myeloid Cell Compartment.
Jonas Schulte-Schrepping, Nico Reusch, Daniela Paclik, Kevin Baßler, Stephan Schlickeiser, Bowen Zhang, Benjamin Krämer, Tobias Krammer, Sophia Brumhard, Lorenzo Bonaguro,[...]. Cell 2020
379
50

Characteristics associated with hospitalisation for COVID-19 in people with rheumatic disease: data from the COVID-19 Global Rheumatology Alliance physician-reported registry.
Milena Gianfrancesco, Kimme L Hyrich, Sarah Al-Adely, Loreto Carmona, Maria I Danila, Laure Gossec, Zara Izadi, Lindsay Jacobsohn, Patricia Katz, Saskia Lawson-Tovey,[...]. Ann Rheum Dis 2020
480
25

SARS CoV-2 infection among patients using immunomodulatory therapies.
Kevin L Winthrop, Amanda E Brunton, Susan Beekmann, Philip Polgreen, John Baddley, Kenneth G Saag, Cassandra Calabrese, Leonard Calabrese, Philip C Robinson, Zachary S Wallace,[...]. Ann Rheum Dis 2021
18
25

Diverse Functional Autoantibodies in Patients with COVID-19.
Eric Y Wang, Tianyang Mao, Jon Klein, Yile Dai, John D Huck, Feimei Liu, Neil S Zheng, Ting Zhou, Benjamin Israelow, Patrick Wong,[...]. medRxiv 2021
50
25

Presenting Characteristics, Comorbidities, and Outcomes Among 5700 Patients Hospitalized With COVID-19 in the New York City Area.
Safiya Richardson, Jamie S Hirsch, Mangala Narasimhan, James M Crawford, Thomas McGinn, Karina W Davidson, Douglas P Barnaby, Lance B Becker, John D Chelico, Stuart L Cohen,[...]. JAMA 2020
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.