A citation-based method for searching scientific literature

Darren J Wight, Giulia Aimola, Amr Aswad, Chi-Yu Jill Lai, Christian Bahamon, Karl Hong, Joshua A Hill, Benedikt B Kaufer. Proc Natl Acad Sci U S A 2020
Times Cited: 4







List of co-cited articles
9 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Evolutionary History of Endogenous Human Herpesvirus 6 Reflects Human Migration out of Africa.
Amr Aswad, Giulia Aimola, Darren Wight, Pavitra Roychoudhury, Cosima Zimmermann, Joshua Hill, Dirk Lassner, Hong Xie, Meei-Li Huang, Nicholas F Parrish,[...]. Mol Biol Evol 2021
4
50

Update on human herpesvirus 6 biology, clinical features, and therapy.
Leen De Bolle, Lieve Naesens, Erik De Clercq. Clin Microbiol Rev 2005
314
50

Possible chromosomal and germline integration of human herpesvirus 7.
Bhupesh K Prusty, Nitish Gulve, Santa Rasa, Modra Murovska, Pilar Collado Hernandez, Dharam V Ablashi. J Gen Virol 2017
15
50

Chromosomally integrated HHV-6: impact on virus, cell and organismal biology.
Benedikt B Kaufer, Louis Flamand. Curr Opin Virol 2014
56
50

The latent human herpesvirus-6A genome specifically integrates in telomeres of human chromosomes in vivo and in vitro.
Jesse H Arbuckle, Maria M Medveczky, Janos Luka, Stephen H Hadley, Andrea Luegmayr, Dharam Ablashi, Troy C Lund, Jakub Tolar, Kenny De Meirleir, Jose G Montoya,[...]. Proc Natl Acad Sci U S A 2010
208
50

Human telomeres that carry an integrated copy of human herpesvirus 6 are often short and unstable, facilitating release of the viral genome from the chromosome.
Yan Huang, Alberto Hidalgo-Bravo, Enjie Zhang, Victoria E Cotton, Aaron Mendez-Bermudez, Gunjan Wig, Zahara Medina-Calzada, Rita Neumann, Alec J Jeffreys, Bruce Winney,[...]. Nucleic Acids Res 2014
48
50

ART: a next-generation sequencing read simulator.
Weichun Huang, Leping Li, Jason R Myers, Gabor T Marth. Bioinformatics 2012
556
50


Role for the shelterin protein TRF2 in human herpesvirus 6A/B chromosomal integration.
Shella Gilbert-Girard, Annie Gravel, Vanessa Collin, Darren J Wight, Benedikt B Kaufer, Eros Lazzerini-Denchi, Louis Flamand. PLoS Pathog 2020
6
50

4C technology: protocols and data analysis.
Harmen J G van de Werken, Paula J P de Vree, Erik Splinter, Sjoerd J B Holwerda, Petra Klous, Elzo de Wit, Wouter de Laat. Methods Enzymol 2012
129
25

Cell Culture Systems To Study Human Herpesvirus 6A/B Chromosomal Integration.
Annie Gravel, Isabelle Dubuc, Nina Wallaschek, Shella Gilbert-Girard, Vanessa Collin, Ruth Hall-Sedlak, Keith R Jerome, Yasuko Mori, Julie Carbonneau, Guy Boivin,[...]. J Virol 2017
17
25

Transcriptional competence of the integrated HIV-1 provirus at the nuclear periphery.
Mariacarolina Dieudonné, Paolo Maiuri, Chiara Biancotto, Anna Knezevich, Anna Kula, Marina Lusic, Alessandro Marcello. EMBO J 2009
53
25


Epigenetic specifications of host chromosome docking sites for latent Epstein-Barr virus.
Kyoung-Dong Kim, Hideki Tanizawa, Alessandra De Leo, Olga Vladimirova, Andrew Kossenkov, Fang Lu, Louise C Showe, Ken-Ichi Noma, Paul M Lieberman. Nat Commun 2020
9
25

Principles of genome folding into topologically associating domains.
Quentin Szabo, Frédéric Bantignies, Giacomo Cavalli. Sci Adv 2019
129
25

4C-seq from beginning to end: A detailed protocol for sample preparation and data analysis.
Peter H L Krijger, Geert Geeven, Valerio Bianchi, Catharina R E Hilvering, Wouter de Laat. Methods 2020
15
25


Chromosomal integration of HHV-6A during non-productive viral infection.
Nitish Gulve, Celina Frank, Maximilian Klepsch, Bhupesh K Prusty. Sci Rep 2017
11
25

Human herpesvirus 6 encoded glycoprotein Q1 gene is essential for virus growth.
Huamin Tang, Akiko Kawabata, Mayumi Yoshida, Hiroko Oyaizu, Takahiro Maeki, Koichi Yamanishi, Yasuko Mori. Virology 2010
41
25

A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting.
Ruiqi Liao, Ruichang Zhang, Jihong Guan, Shuigeng Zhou. IEEE/ACM Trans Comput Biol Bioinform 2014
15
25

Antigen clasping by two antigen-binding sites of an exceptionally specific antibody for histone methylation.
Takamitsu Hattori, Darson Lai, Irina S Dementieva, Sherwin P Montaño, Kohei Kurosawa, Yupeng Zheng, Louesa R Akin, Kalina M Świst-Rosowska, Adrian T Grzybowski, Akiko Koide,[...]. Proc Natl Acad Sci U S A 2016
20
25


STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
25


Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
25

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
25


Current understanding of human herpesvirus 6 (HHV-6) chromosomal integration.
Giulia Aimola, Georg Beythien, Amr Aswad, Benedikt B Kaufer. Antiviral Res 2020
8
25

peakC: a flexible, non-parametric peak calling package for 4C and Capture-C data.
Geert Geeven, Hans Teunissen, Wouter de Laat, Elzo de Wit. Nucleic Acids Res 2018
25
25

Molecular and virological evidence of viral activation from chromosomally integrated human herpesvirus 6A in a patient with X-linked severe combined immunodeficiency.
Akifumi Endo, Ken Watanabe, Tamae Ohye, Kyoko Suzuki, Tomoyo Matsubara, Norio Shimizu, Hiroki Kurahashi, Tetsushi Yoshikawa, Harutaka Katano, Naoki Inoue,[...]. Clin Infect Dis 2014
84
25

The Epstein-Barr Virus Episome Maneuvers between Nuclear Chromatin Compartments during Reactivation.
Stephanie A Moquin, Sean Thomas, Sean Whalen, Alix Warburton, Samantha G Fernandez, Alison A McBride, Katherine S Pollard, Jj L Miranda. J Virol 2018
22
25

Preparation of cross-linked cellular extracts with formaldehyde.
Timothy W Nilsen. Cold Spring Harb Protoc 2014
2
50

Structural variants identified by Oxford Nanopore PromethION sequencing of the human genome.
Wouter De Coster, Peter De Rijk, Arne De Roeck, Tim De Pooter, Svenn D'Hert, Mojca Strazisar, Kristel Sleegers, Christine Van Broeckhoven. Genome Res 2019
49
25

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
25

A population-based study of primary human herpesvirus 6 infection.
Danielle M Zerr, Amalia S Meier, Stacy S Selke, Lisa M Frenkel, Meei-Li Huang, Anna Wald, Margaret P Rhoads, Long Nguy, Rena Bornemann, Rhoda Ashley Morrow,[...]. N Engl J Med 2005
253
25

Dual roles for the telomeric repeats in chromosomally integrated human herpesvirus-6.
Tamae Ohye, Hidehito Inagaki, Masaru Ihira, Yuki Higashimoto, Koji Kato, Junko Oikawa, Hiroshi Yagasaki, Takahiro Niizuma, Yoshiyuki Takahashi, Seiji Kojima,[...]. Sci Rep 2014
22
25

Seroepidemiology of human herpesvirus 6 infection in normal children and adults.
T Okuno, K Takahashi, K Balachandra, K Shiraki, K Yamanishi, M Takahashi, K Baba. J Clin Microbiol 1989
344
25


Identification of human herpesvirus 6 latency-associated transcripts.
Kazuhiro Kondo, Kazuya Shimada, Junji Sashihara, Keiko Tanaka-Taya, Koichi Yamanishi. J Virol 2002
37
25

Human herpesvirus 6 integrates within telomeric regions as evidenced by five different chromosomal sites.
Elisabeth P Nacheva, Katherine N Ward, Diana Brazma, Anna Virgili, Julie Howard, Hoe Nam Leong, Duncan A Clark. J Med Virol 2008
61
25

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
25

Discovery and Characterization of a Cellular Potent Positive Allosteric Modulator of the Polycomb Repressive Complex 1 Chromodomain, CBX7.
Kelsey N Lamb, Daniel Bsteh, Sarah N Dishman, Hagar F Moussa, Huitao Fan, Jacob I Stuckey, Jacqueline L Norris, Stephanie H Cholensky, Dongxu Li, Jingkui Wang,[...]. Cell Chem Biol 2019
13
25

TelomereHunter - in silico estimation of telomere content and composition from cancer genomes.
Lars Feuerbach, Lina Sieverling, Katharina I Deeg, Philip Ginsbach, Barbara Hutter, Ivo Buchhalter, Paul A Northcott, Sadaf S Mughal, Priya Chudasama, Hanno Glimm,[...]. BMC Bioinformatics 2019
9
25

Chromatin Profiles of Chromosomally Integrated Human Herpesvirus-6A.
Anthony J Saviola, Cosima Zimmermann, Michael P Mariani, Sylvia A Signorelli, Diana L Gerrard, Joseph R Boyd, Darren J Wight, Guillaume Morissette, Annie Gravel, Isabelle Dubuc,[...]. Front Microbiol 2019
12
25

circlize Implements and enhances circular visualization in R.
Zuguang Gu, Lei Gu, Roland Eils, Matthias Schlesner, Benedikt Brors. Bioinformatics 2014
733
25

The Telomeric Repeats of Human Herpesvirus 6A (HHV-6A) Are Required for Efficient Virus Integration.
Nina Wallaschek, Anirban Sanyal, Fabian Pirzer, Annie Gravel, Yasuko Mori, Louis Flamand, Benedikt B Kaufer. PLoS Pathog 2016
39
25

[Human herpesvirus-6 and human herpesvirus-7 (HHV-6, HHV-7)].
Huamin Tang, Tomohiko Sadaoka, Yasuko Mori. Uirusu 2010
3
33

Herpesvirus Genome Integration into Telomeric Repeats of Host Cell Chromosomes.
Nikolaus Osterrieder, Nina Wallaschek, Benedikt B Kaufer. Annu Rev Virol 2014
32
25


The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.