Jian-Feng Xiang, Victor G Corces. Curr Opin Genet Dev 2021
Times Cited: 14
Times Cited: 14
Times Cited
Times Co-cited
Similarity
Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
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Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
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Organizational principles of 3D genome architecture.
M Jordan Rowley, Victor G Corces. Nat Rev Genet 2018
M Jordan Rowley, Victor G Corces. Nat Rev Genet 2018
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Long-range enhancer-promoter contacts in gene expression control.
Stefan Schoenfelder, Peter Fraser. Nat Rev Genet 2019
Stefan Schoenfelder, Peter Fraser. Nat Rev Genet 2019
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On the choreography of genome folding: A grand pas de deux of cohesin and CTCF.
Marjon S van Ruiten, Benjamin D Rowland. Curr Opin Cell Biol 2021
Marjon S van Ruiten, Benjamin D Rowland. Curr Opin Cell Biol 2021
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Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Gordana Wutz, Csilla Várnai, Kota Nagasaka, David A Cisneros, Roman R Stocsits, Wen Tang, Stefan Schoenfelder, Gregor Jessberger, Matthias Muhar, M Julius Hossain,[...]. EMBO J 2017
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Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
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21
Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.
Bogdan Bintu, Leslie J Mateo, Jun-Han Su, Nicholas A Sinnott-Armstrong, Mirae Parker, Seon Kinrot, Kei Yamaya, Alistair N Boettiger, Xiaowei Zhuang. Science 2018
Bogdan Bintu, Leslie J Mateo, Jun-Han Su, Nicholas A Sinnott-Armstrong, Mirae Parker, Seon Kinrot, Kei Yamaya, Alistair N Boettiger, Xiaowei Zhuang. Science 2018
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Dynamic interplay between enhancer-promoter topology and gene activity.
Hongtao Chen, Michal Levo, Lev Barinov, Miki Fujioka, James B Jaynes, Thomas Gregor. Nat Genet 2018
Hongtao Chen, Michal Levo, Lev Barinov, Miki Fujioka, James B Jaynes, Thomas Gregor. Nat Genet 2018
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Genome folding through loop extrusion by SMC complexes.
Iain F Davidson, Jan-Michael Peters. Nat Rev Mol Cell Biol 2021
Iain F Davidson, Jan-Michael Peters. Nat Rev Mol Cell Biol 2021
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To loop or not to loop: what is the role of TADs in enhancer function and gene regulation?
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Gabriel R Cavalheiro, Tim Pollex, Eileen Em Furlong. Curr Opin Genet Dev 2021
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TFIIIC Binding to Alu Elements Controls Gene Expression via Chromatin Looping and Histone Acetylation.
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Evaluating Enhancer Function and Transcription.
Andrew Field, Karen Adelman. Annu Rev Biochem 2020
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Homotypic clustering of L1 and B1/Alu repeats compartmentalizes the 3D genome.
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CTCF: an architectural protein bridging genome topology and function.
Chin-Tong Ong, Victor G Corces. Nat Rev Genet 2014
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Many facades of CTCF unified by its coding for three-dimensional genome architecture.
Qiang Wu, Peifeng Liu, Leyang Wang. J Genet Genomics 2020
Qiang Wu, Peifeng Liu, Leyang Wang. J Genet Genomics 2020
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Systematic Functional Interrogation of Genes in GWAS Loci Identified ATF1 as a Key Driver in Colorectal Cancer Modulated by a Promoter-Enhancer Interaction.
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Super-enhancers in the control of cell identity and disease.
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Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
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CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation.
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Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
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Elphège P Nora, Anton Goloborodko, Anne-Laure Valton, Johan H Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A Mirny, Benoit G Bruneau. Cell 2017
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Cell-type specialization is encoded by specific chromatin topologies.
Warren Winick-Ng, Alexander Kukalev, Izabela Harabula, Luna Zea-Redondo, Dominik Szabó, Mandy Meijer, Leonid Serebreni, Yingnan Zhang, Simona Bianco, Andrea M Chiariello,[...]. Nature 2021
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Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Haoyue Zhang, Daniel J Emerson, Thomas G Gilgenast, Katelyn R Titus, Yemin Lan, Peng Huang, Di Zhang, Hongxin Wang, Cheryl A Keller, Belinda Giardine,[...]. Nature 2019
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Two independent modes of chromatin organization revealed by cohesin removal.
Wibke Schwarzer, Nezar Abdennur, Anton Goloborodko, Aleksandra Pekowska, Geoffrey Fudenberg, Yann Loe-Mie, Nuno A Fonseca, Wolfgang Huber, Christian H Haering, Leonid Mirny,[...]. Nature 2017
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A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells.
Yarui Diao, Rongxin Fang, Bin Li, Zhipeng Meng, Juntao Yu, Yunjiang Qiu, Kimberly C Lin, Hui Huang, Tristin Liu, Ryan J Marina,[...]. Nat Methods 2017
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DNA loop extrusion by human cohesin.
Iain F Davidson, Benedikt Bauer, Daniela Goetz, Wen Tang, Gordana Wutz, Jan-Michael Peters. Science 2019
Iain F Davidson, Benedikt Bauer, Daniela Goetz, Wen Tang, Gordana Wutz, Jan-Michael Peters. Science 2019
14
Genetic dissection of the α-globin super-enhancer in vivo.
Deborah Hay, Jim R Hughes, Christian Babbs, James O J Davies, Bryony J Graham, Lars Hanssen, Mira T Kassouf, A Marieke Marieke Oudelaar, Jacqueline A Sharpe, Maria C Suciu,[...]. Nat Genet 2016
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Genome-wide characterization of mammalian promoters with distal enhancer functions.
Lan T M Dao, Ariel O Galindo-Albarrán, Jaime A Castro-Mondragon, Charlotte Andrieu-Soler, Alejandra Medina-Rivera, Charbel Souaid, Guillaume Charbonnier, Aurélien Griffon, Laurent Vanhille, Tharshana Stephen,[...]. Nat Genet 2017
Lan T M Dao, Ariel O Galindo-Albarrán, Jaime A Castro-Mondragon, Charlotte Andrieu-Soler, Alejandra Medina-Rivera, Charbel Souaid, Guillaume Charbonnier, Aurélien Griffon, Laurent Vanhille, Tharshana Stephen,[...]. Nat Genet 2017
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Enhancer redundancy provides phenotypic robustness in mammalian development.
Marco Osterwalder, Iros Barozzi, Virginie Tissières, Yoko Fukuda-Yuzawa, Brandon J Mannion, Sarah Y Afzal, Elizabeth A Lee, Yiwen Zhu, Ingrid Plajzer-Frick, Catherine S Pickle,[...]. Nature 2018
Marco Osterwalder, Iros Barozzi, Virginie Tissières, Yoko Fukuda-Yuzawa, Brandon J Mannion, Sarah Y Afzal, Elizabeth A Lee, Yiwen Zhu, Ingrid Plajzer-Frick, Catherine S Pickle,[...]. Nature 2018
14
The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription.
Olga Mikhaylichenko, Vladyslav Bondarenko, Dermot Harnett, Ignacio E Schor, Matilda Males, Rebecca R Viales, Eileen E M Furlong. Genes Dev 2018
Olga Mikhaylichenko, Vladyslav Bondarenko, Dermot Harnett, Ignacio E Schor, Matilda Males, Rebecca R Viales, Eileen E M Furlong. Genes Dev 2018
14
A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.
Johanna Gassler, Hugo B Brandão, Maxim Imakaev, Ilya M Flyamer, Sabrina Ladstätter, Wendy A Bickmore, Jan-Michael Peters, Leonid A Mirny, Kikuë Tachibana. EMBO J 2017
Johanna Gassler, Hugo B Brandão, Maxim Imakaev, Ilya M Flyamer, Sabrina Ladstätter, Wendy A Bickmore, Jan-Michael Peters, Leonid A Mirny, Kikuë Tachibana. EMBO J 2017
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Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
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Testing the super-enhancer concept.
Gerd A Blobel, Douglas R Higgs, Jennifer A Mitchell, Dimple Notani, Richard A Young. Nat Rev Genet 2021
Gerd A Blobel, Douglas R Higgs, Jennifer A Mitchell, Dimple Notani, Richard A Young. Nat Rev Genet 2021
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Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts.
Stephen S Gisselbrecht, Alexandre Palagi, Jesse V Kurland, Julia M Rogers, Hakan Ozadam, Ye Zhan, Job Dekker, Martha L Bulyk. Mol Cell 2020
Stephen S Gisselbrecht, Alexandre Palagi, Jesse V Kurland, Julia M Rogers, Hakan Ozadam, Ye Zhan, Job Dekker, Martha L Bulyk. Mol Cell 2020
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A unique chromatin signature uncovers early developmental enhancers in humans.
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Master transcription factors and mediator establish super-enhancers at key cell identity genes.
Warren A Whyte, David A Orlando, Denes Hnisz, Brian J Abraham, Charles Y Lin, Michael H Kagey, Peter B Rahl, Tong Ihn Lee, Richard A Young. Cell 2013
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The relationship between genome structure and function.
A Marieke Oudelaar, Douglas R Higgs. Nat Rev Genet 2021
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Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin.
Elizabeth Ing-Simmons, Vlad C Seitan, Andre J Faure, Paul Flicek, Thomas Carroll, Job Dekker, Amanda G Fisher, Boris Lenhard, Matthias Merkenschlager. Genome Res 2015
Elizabeth Ing-Simmons, Vlad C Seitan, Andre J Faure, Paul Flicek, Thomas Carroll, Job Dekker, Amanda G Fisher, Boris Lenhard, Matthias Merkenschlager. Genome Res 2015
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Human cohesin compacts DNA by loop extrusion.
Yoori Kim, Zhubing Shi, Hongshan Zhang, Ilya J Finkelstein, Hongtao Yu. Science 2019
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Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding.
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Multiple sequence alignment using ClustalW and ClustalX.
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Lineage-specific expansion of the zinc finger associated domain ZAD.
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N-terminal domain of the architectural protein CTCF has similar structural organization and ability to self-association in bilaterian organisms.
Artem Bonchuk, Sofia Kamalyan, Sofia Mariasina, Konstantin Boyko, Vladimir Popov, Oksana Maksimenko, Pavel Georgiev. Sci Rep 2020
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The Human Transcription Factors.
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Restoring low resolution structure of biological macromolecules from solution scattering using simulated annealing.
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Mechanisms of Enhancer-Promoter Interactions in Higher Eukaryotes.
Olga Kyrchanova, Pavel Georgiev. Int J Mol Sci 2021
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Structural analysis and dimerization profile of the SCAN domain of the pluripotency factor Zfp206.
Yu Liang, Felicia Huimei Hong, Pugalenthi Ganesan, Sizun Jiang, Ralf Jauch, Lawrence W Stanton, Prasanna R Kolatkar. Nucleic Acids Res 2012
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Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster.
Artem Bonchuk, Oksana Maksimenko, Olga Kyrchanova, Tatyana Ivlieva, Vladic Mogila, Girish Deshpande, Daniel Wolle, Paul Schedl, Pavel Georgiev. BMC Biol 2015
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Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.