A citation-based method for searching scientific literature

Jian-Feng Xiang, Victor G Corces. Curr Opin Genet Dev 2021
Times Cited: 14







List of co-cited articles
71 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
28

Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
769
28

Organizational principles of 3D genome architecture.
M Jordan Rowley, Victor G Corces. Nat Rev Genet 2018
405
21

Long-range enhancer-promoter contacts in gene expression control.
Stefan Schoenfelder, Peter Fraser. Nat Rev Genet 2019
333
21

On the choreography of genome folding: A grand pas de deux of cohesin and CTCF.
Marjon S van Ruiten, Benjamin D Rowland. Curr Opin Cell Biol 2021
13
23

Topologically associating domains and chromatin loops depend on cohesin and are regulated by CTCF, WAPL, and PDS5 proteins.
Gordana Wutz, Csilla Várnai, Kota Nagasaka, David A Cisneros, Roman R Stocsits, Wen Tang, Stefan Schoenfelder, Gregor Jessberger, Matthias Muhar, M Julius Hossain,[...]. EMBO J 2017
328
21

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
21

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
21

Super-resolution chromatin tracing reveals domains and cooperative interactions in single cells.
Bogdan Bintu, Leslie J Mateo, Jun-Han Su, Nicholas A Sinnott-Armstrong, Mirae Parker, Seon Kinrot, Kei Yamaya, Alistair N Boettiger, Xiaowei Zhuang. Science 2018
374
21

Dynamic interplay between enhancer-promoter topology and gene activity.
Hongtao Chen, Michal Levo, Lev Barinov, Miki Fujioka, James B Jaynes, Thomas Gregor. Nat Genet 2018
172
21

Genome folding through loop extrusion by SMC complexes.
Iain F Davidson, Jan-Michael Peters. Nat Rev Mol Cell Biol 2021
50
21

To loop or not to loop: what is the role of TADs in enhancer function and gene regulation?
Gabriel R Cavalheiro, Tim Pollex, Eileen Em Furlong. Curr Opin Genet Dev 2021
10
20

TFIIIC Binding to Alu Elements Controls Gene Expression via Chromatin Looping and Histone Acetylation.
Roberto Ferrari, Lara Isabel de Llobet Cucalon, Chiara Di Vona, François Le Dilly, Enrique Vidal, Antonios Lioutas, Javier Quilez Oliete, Laura Jochem, Erin Cutts, Giorgio Dieci,[...]. Mol Cell 2020
31
14

Methods for mapping 3D chromosome architecture.
Rieke Kempfer, Ana Pombo. Nat Rev Genet 2020
159
14

Evaluating Enhancer Function and Transcription.
Andrew Field, Karen Adelman. Annu Rev Biochem 2020
39
14

Homotypic clustering of L1 and B1/Alu repeats compartmentalizes the 3D genome.
J Yuyang Lu, Lei Chang, Tong Li, Ting Wang, Yafei Yin, Ge Zhan, Xue Han, Ke Zhang, Yibing Tao, Michelle Percharde,[...]. Cell Res 2021
32
14

CTCF: an architectural protein bridging genome topology and function.
Chin-Tong Ong, Victor G Corces. Nat Rev Genet 2014
612
14

Many facades of CTCF unified by its coding for three-dimensional genome architecture.
Qiang Wu, Peifeng Liu, Leyang Wang. J Genet Genomics 2020
6
33

Systematic Functional Interrogation of Genes in GWAS Loci Identified ATF1 as a Key Driver in Colorectal Cancer Modulated by a Promoter-Enhancer Interaction.
Jianbo Tian, Jiang Chang, Jing Gong, Jiao Lou, Mingpeng Fu, Jiaoyuan Li, Juntao Ke, Ying Zhu, Yajie Gong, Yang Yang,[...]. Am J Hum Genet 2019
25
14

Super-enhancers in the control of cell identity and disease.
Denes Hnisz, Brian J Abraham, Tong Ihn Lee, Ashley Lau, Violaine Saint-André, Alla A Sigova, Heather A Hoke, Richard A Young. Cell 2013
14

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
14

CTCF and Cohesin in Genome Folding and Transcriptional Gene Regulation.
Matthias Merkenschlager, Elphège P Nora. Annu Rev Genomics Hum Genet 2016
267
14

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Elphège P Nora, Anton Goloborodko, Anne-Laure Valton, Johan H Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A Mirny, Benoit G Bruneau. Cell 2017
725
14

Cell-type specialization is encoded by specific chromatin topologies.
Warren Winick-Ng, Alexander Kukalev, Izabela Harabula, Luna Zea-Redondo, Dominik Szabó, Mandy Meijer, Leonid Serebreni, Yingnan Zhang, Simona Bianco, Andrea M Chiariello,[...]. Nature 2021
10
20

Chromatin structure dynamics during the mitosis-to-G1 phase transition.
Haoyue Zhang, Daniel J Emerson, Thomas G Gilgenast, Katelyn R Titus, Yemin Lan, Peng Huang, Di Zhang, Hongxin Wang, Cheryl A Keller, Belinda Giardine,[...]. Nature 2019
75
14

Two independent modes of chromatin organization revealed by cohesin removal.
Wibke Schwarzer, Nezar Abdennur, Anton Goloborodko, Aleksandra Pekowska, Geoffrey Fudenberg, Yann Loe-Mie, Nuno A Fonseca, Wolfgang Huber, Christian H Haering, Leonid Mirny,[...]. Nature 2017
503
14

A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells.
Yarui Diao, Rongxin Fang, Bin Li, Zhipeng Meng, Juntao Yu, Yunjiang Qiu, Kimberly C Lin, Hui Huang, Tristin Liu, Ryan J Marina,[...]. Nat Methods 2017
129
14

DNA loop extrusion by human cohesin.
Iain F Davidson, Benedikt Bauer, Daniela Goetz, Wen Tang, Gordana Wutz, Jan-Michael Peters. Science 2019
265
14

Genetic dissection of the α-globin super-enhancer in vivo.
Deborah Hay, Jim R Hughes, Christian Babbs, James O J Davies, Bryony J Graham, Lars Hanssen, Mira T Kassouf, A Marieke Marieke Oudelaar, Jacqueline A Sharpe, Maria C Suciu,[...]. Nat Genet 2016
188
14

Genome-wide characterization of mammalian promoters with distal enhancer functions.
Lan T M Dao, Ariel O Galindo-Albarrán, Jaime A Castro-Mondragon, Charlotte Andrieu-Soler, Alejandra Medina-Rivera, Charbel Souaid, Guillaume Charbonnier, Aurélien Griffon, Laurent Vanhille, Tharshana Stephen,[...]. Nat Genet 2017
126
14

Enhancer redundancy provides phenotypic robustness in mammalian development.
Marco Osterwalder, Iros Barozzi, Virginie Tissières, Yoko Fukuda-Yuzawa, Brandon J Mannion, Sarah Y Afzal, Elizabeth A Lee, Yiwen Zhu, Ingrid Plajzer-Frick, Catherine S Pickle,[...]. Nature 2018
252
14

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription.
Olga Mikhaylichenko, Vladyslav Bondarenko, Dermot Harnett, Ignacio E Schor, Matilda Males, Rebecca R Viales, Eileen E M Furlong. Genes Dev 2018
120
14

A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.
Johanna Gassler, Hugo B Brandão, Maxim Imakaev, Ilya M Flyamer, Sabrina Ladstätter, Wendy A Bickmore, Jan-Michael Peters, Leonid A Mirny, Kikuë Tachibana. EMBO J 2017
169
14

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
816
14

Testing the super-enhancer concept.
Gerd A Blobel, Douglas R Higgs, Jennifer A Mitchell, Dimple Notani, Richard A Young. Nat Rev Genet 2021
11
18

Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts.
Stephen S Gisselbrecht, Alexandre Palagi, Jesse V Kurland, Julia M Rogers, Hakan Ozadam, Ye Zhan, Job Dekker, Martha L Bulyk. Mol Cell 2020
39
14

A unique chromatin signature uncovers early developmental enhancers in humans.
Alvaro Rada-Iglesias, Ruchi Bajpai, Tomek Swigut, Samantha A Brugmann, Ryan A Flynn, Joanna Wysocka. Nature 2011
14

Master transcription factors and mediator establish super-enhancers at key cell identity genes.
Warren A Whyte, David A Orlando, Denes Hnisz, Brian J Abraham, Charles Y Lin, Michael H Kagey, Peter B Rahl, Tong Ihn Lee, Richard A Young. Cell 2013
14

The relationship between genome structure and function.
A Marieke Oudelaar, Douglas R Higgs. Nat Rev Genet 2021
23
14

Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin.
Elizabeth Ing-Simmons, Vlad C Seitan, Andre J Faure, Paul Flicek, Thomas Carroll, Job Dekker, Amanda G Fisher, Boris Lenhard, Matthias Merkenschlager. Genome Res 2015
103
14

Human cohesin compacts DNA by loop extrusion.
Yoori Kim, Zhubing Shi, Hongshan Zhang, Ilya J Finkelstein, Hongtao Yu. Science 2019
235
14

Resolving the 3D Landscape of Transcription-Linked Mammalian Chromatin Folding.
Tsung-Han S Hsieh, Claudia Cattoglio, Elena Slobodyanyuk, Anders S Hansen, Oliver J Rando, Robert Tjian, Xavier Darzacq. Mol Cell 2020
134
14

Multiple sequence alignment using ClustalW and ClustalX.
Julie D Thompson, Toby J Gibson, Des G Higgins. Curr Protoc Bioinformatics 2002
14

Lineage-specific expansion of the zinc finger associated domain ZAD.
Ho-Ryun Chung, Ulrike Löhr, Herbert Jäckle. Mol Biol Evol 2007
40
14

N-terminal domain of the architectural protein CTCF has similar structural organization and ability to self-association in bilaterian organisms.
Artem Bonchuk, Sofia Kamalyan, Sofia Mariasina, Konstantin Boyko, Vladimir Popov, Oksana Maksimenko, Pavel Georgiev. Sci Rep 2020
11
18

The Human Transcription Factors.
Samuel A Lambert, Arttu Jolma, Laura F Campitelli, Pratyush K Das, Yimeng Yin, Mihai Albu, Xiaoting Chen, Jussi Taipale, Timothy R Hughes, Matthew T Weirauch. Cell 2018
145
14


Mechanisms of Enhancer-Promoter Interactions in Higher Eukaryotes.
Olga Kyrchanova, Pavel Georgiev. Int J Mol Sci 2021
13
15

Structural analysis and dimerization profile of the SCAN domain of the pluripotency factor Zfp206.
Yu Liang, Felicia Huimei Hong, Pugalenthi Ganesan, Sizun Jiang, Ralf Jauch, Lawrence W Stanton, Prasanna R Kolatkar. Nucleic Acids Res 2012
20
14

Functional role of dimerization and CP190 interacting domains of CTCF protein in Drosophila melanogaster.
Artem Bonchuk, Oksana Maksimenko, Olga Kyrchanova, Tatyana Ivlieva, Vladic Mogila, Girish Deshpande, Daniel Wolle, Paul Schedl, Pavel Georgiev. BMC Biol 2015
45
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.