A citation-based method for searching scientific literature

Joshua B Black, Sean R McCutcheon, Shataakshi Dube, Alejandro Barrera, Tyler S Klann, Grayson A Rice, Shaunak S Adkar, Scott H Soderling, Timothy E Reddy, Charles A Gersbach. Cell Rep 2020
Times Cited: 12







List of co-cited articles
80 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Direct conversion of fibroblasts to functional neurons by defined factors.
Thomas Vierbuchen, Austin Ostermeier, Zhiping P Pang, Yuko Kokubu, Thomas C Südhof, Marius Wernig. Nature 2010
41


A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.
Martin Jinek, Krzysztof Chylinski, Ines Fonfara, Michael Hauer, Jennifer A Doudna, Emmanuelle Charpentier. Science 2012
33

Highly efficient Cas9-mediated transcriptional programming.
Alejandro Chavez, Jonathan Scheiman, Suhani Vora, Benjamin W Pruitt, Marcelle Tuttle, Eswar P R Iyer, Shuailiang Lin, Samira Kiani, Christopher D Guzman, Daniel J Wiegand,[...]. Nat Methods 2015
771
33

Comparison of Cas9 activators in multiple species.
Alejandro Chavez, Marcelle Tuttle, Benjamin W Pruitt, Ben Ewen-Campen, Raj Chari, Dmitry Ter-Ovanesyan, Sabina J Haque, Ryan J Cecchi, Emma J K Kowal, Joanna Buchthal,[...]. Nat Methods 2016
263
25

CRISPR Interference-Based Platform for Multimodal Genetic Screens in Human iPSC-Derived Neurons.
Ruilin Tian, Mariam A Gachechiladze, Connor H Ludwig, Matthew T Laurie, Jason Y Hong, Diane Nathaniel, Anika V Prabhu, Michael S Fernandopulle, Rajan Patel, Mehrnoosh Abshari,[...]. Neuron 2019
110
25

Engineering of human brain organoids with a functional vascular-like system.
Bilal Cakir, Yangfei Xiang, Yoshiaki Tanaka, Mehmet H Kural, Maxime Parent, Young-Jin Kang, Kayley Chapeton, Benjamin Patterson, Yifan Yuan, Chang-Shun He,[...]. Nat Methods 2019
272
25

Genome-scale transcriptional activation by an engineered CRISPR-Cas9 complex.
Silvana Konermann, Mark D Brigham, Alexandro E Trevino, Julia Joung, Omar O Abudayyeh, Clea Barcena, Patrick D Hsu, Naomi Habib, Jonathan S Gootenberg, Hiroshi Nishimasu,[...]. Nature 2015
25

Induction of pluripotent stem cells from adult human fibroblasts by defined factors.
Kazutoshi Takahashi, Koji Tanabe, Mari Ohnuki, Megumi Narita, Tomoko Ichisaka, Kiichiro Tomoda, Shinya Yamanaka. Cell 2007
25

Perturb-Seq: Dissecting Molecular Circuits with Scalable Single-Cell RNA Profiling of Pooled Genetic Screens.
Atray Dixit, Oren Parnas, Biyu Li, Jenny Chen, Charles P Fulco, Livnat Jerby-Arnon, Nemanja D Marjanovic, Danielle Dionne, Tyler Burks, Raktima Raychowdhury,[...]. Cell 2016
544
25


CRISPR Activation Screens Systematically Identify Factors that Drive Neuronal Fate and Reprogramming.
Yanxia Liu, Chen Yu, Timothy Patrick Daley, Fangyuan Wang, William S Cao, Salil Bhate, Xueqiu Lin, Chris Still, Honglei Liu, Dehua Zhao,[...]. Cell Stem Cell 2018
95
25

Generation of induced neuronal cells by the single reprogramming factor ASCL1.
Soham Chanda, Cheen Euong Ang, Jonathan Davila, ChangHui Pak, Moritz Mall, Qian Yi Lee, Henrik Ahlenius, Seung Woo Jung, Thomas C Südhof, Marius Wernig. Stem Cell Reports 2014
219
25

A TALE nuclease architecture for efficient genome editing.
Jeffrey C Miller, Siyuan Tan, Guijuan Qiao, Kyle A Barlow, Jianbin Wang, Danny F Xia, Xiangdong Meng, David E Paschon, Elo Leung, Sarah J Hinkley,[...]. Nat Biotechnol 2011
16

RNA-guided human genome engineering via Cas9.
Prashant Mali, Luhan Yang, Kevin M Esvelt, John Aach, Marc Guell, James E DiCarlo, Julie E Norville, George M Church. Science 2013
16

Highly efficient RNA-guided genome editing in human cells via delivery of purified Cas9 ribonucleoproteins.
Sojung Kim, Daesik Kim, Seung Woo Cho, Jungeun Kim, Jin-Soo Kim. Genome Res 2014
966
16

Generation of isogenic pluripotent stem cells differing exclusively at two early onset Parkinson point mutations.
Frank Soldner, Josée Laganière, Albert W Cheng, Dirk Hockemeyer, Qing Gao, Raaji Alagappan, Vikram Khurana, Lawrence I Golbe, Richard H Myers, Susan Lindquist,[...]. Cell 2011
514
16

A simple, quick, and efficient CRISPR/Cas9 genome editing method for human induced pluripotent stem cells.
Bing-Chuan Geng, Kyoung-Han Choi, Shan-Zhi Wang, Peng Chen, Xiu-di Pan, Nian-Guo Dong, Jae-Kyun Ko, Hua Zhu. Acta Pharmacol Sin 2020
9
22

Induced Pluripotent Stem Cells Meet Genome Editing.
Dirk Hockemeyer, Rudolf Jaenisch. Cell Stem Cell 2016
275
16

DNA targeting specificity of RNA-guided Cas9 nucleases.
Patrick D Hsu, David A Scott, Joshua A Weinstein, F Ann Ran, Silvana Konermann, Vineeta Agarwala, Yinqing Li, Eli J Fine, Xuebing Wu, Ophir Shalem,[...]. Nat Biotechnol 2013
16

Multiplex genome engineering using CRISPR/Cas systems.
Le Cong, F Ann Ran, David Cox, Shuailiang Lin, Robert Barretto, Naomi Habib, Patrick D Hsu, Xuebing Wu, Wenyan Jiang, Luciano A Marraffini,[...]. Science 2013
16

CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes.
Luke A Gilbert, Matthew H Larson, Leonardo Morsut, Zairan Liu, Gloria A Brar, Sandra E Torres, Noam Stern-Ginossar, Onn Brandman, Evan H Whitehead, Jennifer A Doudna,[...]. Cell 2013
16

Development and Validation of CRISPR Activator Systems for Overexpression of CB1 Receptors in Neurons.
Valentina Di Maria, Marine Moindrot, Martin Ryde, Antonino Bono, Luis Quintino, Marco Ledri. Front Mol Neurosci 2020
5
40

CRISPR-mediated activation of a promoter or enhancer rescues obesity caused by haploinsufficiency.
Navneet Matharu, Sawitree Rattanasopha, Serena Tamura, Lenka Maliskova, Yi Wang, Adelaide Bernard, Aaron Hardin, Walter L Eckalbar, Christian Vaisse, Nadav Ahituv. Science 2019
128
16

A Neuron-Optimized CRISPR/dCas9 Activation System for Robust and Specific Gene Regulation.
Katherine E Savell, Svitlana V Bach, Morgan E Zipperly, Jasmin S Revanna, Nicholas A Goska, Jennifer J Tuscher, Corey G Duke, Faraz A Sultan, Julia N Burke, Derek Williams,[...]. eNeuro 2019
56
16

A Single-Cell Transcriptomics CRISPR-Activation Screen Identifies Epigenetic Regulators of the Zygotic Genome Activation Program.
Celia Alda-Catalinas, Danila Bredikhin, Irene Hernando-Herraez, Fátima Santos, Oana Kubinyecz, Mélanie A Eckersley-Maslin, Oliver Stegle, Wolf Reik. Cell Syst 2020
24
16

Hierarchical mechanisms for direct reprogramming of fibroblasts to neurons.
Orly L Wapinski, Thomas Vierbuchen, Kun Qu, Qian Yi Lee, Soham Chanda, Daniel R Fuentes, Paul G Giresi, Yi Han Ng, Samuele Marro, Norma F Neff,[...]. Cell 2013
368
16

Transcription Factor-Based Fate Specification and Forward Programming for Neural Regeneration.
Lea J Flitsch, Karen E Laupman, Oliver Brüstle. Front Cell Neurosci 2020
13
16

Directed differentiation and functional maturation of cortical interneurons from human embryonic stem cells.
Asif M Maroof, Sotirios Keros, Jennifer A Tyson, Shui-Wang Ying, Yosif M Ganat, Florian T Merkle, Becky Liu, Adam Goulburn, Edouard G Stanley, Andrew G Elefanty,[...]. Cell Stem Cell 2013
387
16

In vivo CRISPRa decreases seizures and rescues cognitive deficits in a rodent model of epilepsy.
Gaia Colasante, Yichen Qiu, Luca Massimino, Claudia Di Berardino, Jonathan H Cornford, Albert Snowball, Mikail Weston, Steffan P Jones, Serena Giannelli, Andreas Lieb,[...]. Brain 2020
39
16

iPSC-Derived Human Microglia-like Cells to Study Neurological Diseases.
Edsel M Abud, Ricardo N Ramirez, Eric S Martinez, Luke M Healy, Cecilia H H Nguyen, Sean A Newman, Andriy V Yeromin, Vanessa M Scarfone, Samuel E Marsh, Cristhian Fimbres,[...]. Neuron 2017
423
16

An Efficient Platform for Astrocyte Differentiation from Human Induced Pluripotent Stem Cells.
Julia Tcw, Minghui Wang, Anna A Pimenova, Kathryn R Bowles, Brigham J Hartley, Emre Lacin, Saima I Machlovi, Rawan Abdelaal, Celeste M Karch, Hemali Phatnani,[...]. Stem Cell Reports 2017
143
16

Efficient differentiation of human embryonic and induced pluripotent stem cells into functional astrocytes.
Luni Emdad, Sunita L D'Souza, Harini P Kothari, Zulekha A Qadeer, Isabelle M Germano. Stem Cells Dev 2012
99
16

An in vivo model of functional and vascularized human brain organoids.
Abed AlFatah Mansour, J Tiago Gonçalves, Cooper W Bloyd, Hao Li, Sarah Fernandes, Daphne Quang, Stephen Johnston, Sarah L Parylak, Xin Jin, Fred H Gage. Nat Biotechnol 2018
445
16

Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria.
Giedrius Gasiunas, Rodolphe Barrangou, Philippe Horvath, Virginijus Siksnys. Proc Natl Acad Sci U S A 2012
16

Search-and-replace genome editing without double-strand breaks or donor DNA.
Andrew V Anzalone, Peyton B Randolph, Jessie R Davis, Alexander A Sousa, Luke W Koblan, Jonathan M Levy, Peter J Chen, Christopher Wilson, Gregory A Newby, Aditya Raguram,[...]. Nature 2019
16

A Single CRISPR-Cas9 Deletion Strategy that Targets the Majority of DMD Patients Restores Dystrophin Function in hiPSC-Derived Muscle Cells.
Courtney S Young, Michael R Hicks, Natalia V Ermolova, Haruko Nakano, Majib Jan, Shahab Younesi, Saravanan Karumbayaram, Chino Kumagai-Cresse, Derek Wang, Jerome A Zack,[...]. Cell Stem Cell 2016
218
16

Frataxin gene editing rescues Friedreich's ataxia pathology in dorsal root ganglia organoid-derived sensory neurons.
Pietro Giuseppe Mazzara, Sharon Muggeo, Mirko Luoni, Luca Massimino, Mattia Zaghi, Parisa Tajalli-Tehrani Valverde, Simone Brusco, Matteo Jacopo Marzi, Cecilia Palma, Gaia Colasante,[...]. Nat Commun 2020
14
16

Cerebral organoids at the air-liquid interface generate diverse nerve tracts with functional output.
Stefano L Giandomenico, Susanna B Mierau, George M Gibbons, Lea M D Wenger, Laura Masullo, Timothy Sit, Magdalena Sutcliffe, Jerome Boulanger, Marco Tripodi, Emmanuel Derivery,[...]. Nat Neurosci 2019
195
16

CRISPR/dCas9-based Scn1a gene activation in inhibitory neurons ameliorates epileptic and behavioral phenotypes of Dravet syndrome model mice.
Tetsushi Yamagata, Matthieu Raveau, Kenta Kobayashi, Hiroyuki Miyamoto, Tetsuya Tatsukawa, Ikuo Ogiwara, Shigeyoshi Itohara, Takao K Hensch, Kazuhiro Yamakawa. Neurobiol Dis 2020
31
16

In vivo simultaneous transcriptional activation of multiple genes in the brain using CRISPR-dCas9-activator transgenic mice.
Haibo Zhou, Junlai Liu, Changyang Zhou, Ni Gao, Zhiping Rao, He Li, Xinde Hu, Changlin Li, Xuan Yao, Xiaowen Shen,[...]. Nat Neurosci 2018
122
16

A comprehensive library of human transcription factors for cell fate engineering.
Alex H M Ng, Parastoo Khoshakhlagh, Jesus Eduardo Rojo Arias, Giovanni Pasquini, Kai Wang, Anka Swiersy, Seth L Shipman, Evan Appleton, Kiavash Kiaee, Richie E Kohman,[...]. Nat Biotechnol 2021
37
16

Targeted Epigenetic Remodeling of Endogenous Loci by CRISPR/Cas9-Based Transcriptional Activators Directly Converts Fibroblasts to Neuronal Cells.
Joshua B Black, Andrew F Adler, Hong-Gang Wang, Anthony M D'Ippolito, Hunter A Hutchinson, Timothy E Reddy, Geoffrey S Pitt, Kam W Leong, Charles A Gersbach. Cell Stem Cell 2016
129
16

Conversion of mouse and human fibroblasts into functional spinal motor neurons.
Esther Y Son, Justin K Ichida, Brian J Wainger, Jeremy S Toma, Victor F Rafuse, Clifford J Woolf, Kevin Eggan. Cell Stem Cell 2011
466
16

Modeling pain in vitro using nociceptor neurons reprogrammed from fibroblasts.
Brian J Wainger, Elizabeth D Buttermore, Julia T Oliveira, Cassidy Mellin, Seungkyu Lee, Wardiya Afshar Saber, Amy J Wang, Justin K Ichida, Isaac M Chiu, Lee Barrett,[...]. Nat Neurosci 2015
132
16

CAS9 transcriptional activators for target specificity screening and paired nickases for cooperative genome engineering.
Prashant Mali, John Aach, P Benjamin Stranges, Kevin M Esvelt, Mark Moosburner, Sriram Kosuri, Luhan Yang, George M Church. Nat Biotechnol 2013
16

RNA-guided gene activation by CRISPR-Cas9-based transcription factors.
Pablo Perez-Pinera, D Dewran Kocak, Christopher M Vockley, Andrew F Adler, Ami M Kabadi, Lauren R Polstein, Pratiksha I Thakore, Katherine A Glass, David G Ousterout, Kam W Leong,[...]. Nat Methods 2013
760
16

CRISPR-Mediated Induction of Neuron-Enriched Mitochondrial Proteins Boosts Direct Glia-to-Neuron Conversion.
Gianluca L Russo, Giovanna Sonsalla, Poornemaa Natarajan, Christopher T Breunig, Giorgia Bulli, Juliane Merl-Pham, Sabine Schmitt, Jessica Giehrl-Schwab, Florian Giesert, Martin Jastroch,[...]. Cell Stem Cell 2021
14
16

A protein-tagging system for signal amplification in gene expression and fluorescence imaging.
Marvin E Tanenbaum, Luke A Gilbert, Lei S Qi, Jonathan S Weissman, Ronald D Vale. Cell 2014
761
16

Mapping Cellular Reprogramming via Pooled Overexpression Screens with Paired Fitness and Single-Cell RNA-Sequencing Readout.
Udit Parekh, Yan Wu, Dongxin Zhao, Atharv Worlikar, Neha Shah, Kun Zhang, Prashant Mali. Cell Syst 2018
15
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.