A citation-based method for searching scientific literature

Annamária Kiss-Tóth, Laszlo Dobson, Bálint Péterfia, Annamária F Ángyán, Balázs Ligeti, Gergely Lukács, Zoltán Gáspári. Entropy (Basel) 2019
Times Cited: 3







List of co-cited articles
3 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A unified resource and configurable model of the synapse proteome and its role in disease.
Oksana Sorokina, Colin Mclean, Mike D R Croning, Katharina F Heil, Emilia Wysocka, Xin He, David Sterratt, Seth G N Grant, T Ian Simpson, J Douglas Armstrong. Sci Rep 2021
7
66

An architectural framework that may lie at the core of the postsynaptic density.
Marisa K Baron, Tobias M Boeckers, Bianca Vaida, Salem Faham, Mari Gingery, Michael R Sawaya, Danielle Salyer, Eckart D Gundelfinger, James U Bowie. Science 2006
216
66

Homer1a drives homeostatic scaling-down of excitatory synapses during sleep.
Graham H Diering, Raja S Nirujogi, Richard H Roth, Paul F Worley, Akhilesh Pandey, Richard L Huganir. Science 2017
258
66

High Precision FRET at Single-molecule Level for Biomolecule Structure Determination.
Junyan Ma, Inna S Yanez-Orozco, Soheila Rezaei Adariani, Drew Dolino, Vasanthi Jayaraman, Hugo Sanabria. J Vis Exp 2017
9
33

The SNARE complex in neuronal and sensory cells.
Neeliyath A Ramakrishnan, Marian J Drescher, Dennis G Drescher. Mol Cell Neurosci 2012
71
33

Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.
Andrea Soranno, Brigitte Buchli, Daniel Nettels, Ryan R Cheng, Sonja Müller-Späth, Shawn H Pfeil, Armin Hoffmann, Everett A Lipman, Dmitrii E Makarov, Benjamin Schuler. Proc Natl Acad Sci U S A 2012
217
33

Intrinsically unstructured proteins and their functions.
H Jane Dyson, Peter E Wright. Nat Rev Mol Cell Biol 2005
33

Stability, folding dynamics, and long-range conformational transition of the synaptic t-SNARE complex.
Xinming Zhang, Aleksander A Rebane, Lu Ma, Feng Li, Junyi Jiao, Hong Qu, Frederic Pincet, James E Rothman, Yongli Zhang. Proc Natl Acad Sci U S A 2016
27
33

ATG14 promotes membrane tethering and fusion of autophagosomes to endolysosomes.
Jiajie Diao, Rong Liu, Yueguang Rong, Minglei Zhao, Jing Zhang, Ying Lai, Qiangjun Zhou, Livia M Wilz, Jianxu Li, Sandro Vivona,[...]. Nature 2015
345
33

DEER distance measurements on proteins.
Gunnar Jeschke. Annu Rev Phys Chem 2012
630
33

Ensemble Switching Unveils a Kinetic Rheostat Mechanism of the Eukaryotic Thiamine Pyrophosphate Riboswitch.
Junyan Ma, Nabanita Saikia, Subash Godar, George L Hamilton, Feng Ding, Joshua Alper, Hugo Sanabria. RNA 2021
6
33

Development of new photon-counting detectors for single-molecule fluorescence microscopy.
X Michalet, R A Colyer, G Scalia, A Ingargiola, R Lin, J E Millaud, S Weiss, Oswald H W Siegmund, Anton S Tremsin, John V Vallerga,[...]. Philos Trans R Soc Lond B Biol Sci 2012
50
33

Markov state models provide insights into dynamic modulation of protein function.
Diwakar Shukla, Carlos X Hernández, Jeffrey K Weber, Vijay S Pande. Acc Chem Res 2015
141
33

A monte carlo method for generating side chain structural ensembles.
Asmit Bhowmick, Teresa Head-Gordon. Structure 2015
14
33

A structural change occurs upon binding of syntaxin to SNAP-25.
D Fasshauer, D Bruns, B Shen, R Jahn, A T Brünger. J Biol Chem 1997
160
33

Technological advances in site-directed spin labeling of proteins.
Wayne L Hubbell, Carlos J López, Christian Altenbach, Zhongyu Yang. Curr Opin Struct Biol 2013
195
33

NMR Spectroscopic Studies of the Conformational Ensembles of Intrinsically Disordered Proteins.
Dennis Kurzbach, Georg Kontaxis, Nicolas Coudevylle, Robert Konrat. Adv Exp Med Biol 2015
18
33

Simulating Replica Exchange: Markov State Models, Proposal Schemes, and the Infinite Swapping Limit.
Bin W Zhang, Wei Dai, Emilio Gallicchio, Peng He, Junchao Xia, Zhiqiang Tan, Ronald M Levy. J Phys Chem B 2016
25
33

Abundance of intrinsic disorder in protein associated with cardiovascular disease.
Yugong Cheng, Tanguy LeGall, Christopher J Oldfield, A Keith Dunker, Vladimir N Uversky. Biochemistry 2006
139
33


Intrinsic α helix propensities compact hydrodynamic radii in intrinsically disordered proteins.
Lance R English, Erin C Tilton, Benjamin J Ricard, Steven T Whitten. Proteins 2017
8
33

Biophysical characterization of the unstructured cytoplasmic domain of the human neuronal adhesion protein neuroligin 3.
Aviv Paz, Tzviya Zeev-Ben-Mordehai, Martin Lundqvist, Eilon Sherman, Efstratios Mylonas, Lev Weiner, Gilad Haran, Dmitri I Svergun, Frans A A Mulder, Joel L Sussman,[...]. Biophys J 2008
29
33

Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS.
Mikayel Aznauryan, Leonildo Delgado, Andrea Soranno, Daniel Nettels, Jie-Rong Huang, Alexander M Labhardt, Stephan Grzesiek, Benjamin Schuler. Proc Natl Acad Sci U S A 2016
93
33

Single-molecule fluorescence studies of intrinsically disordered proteins and liquid phase separation.
Irem Nasir, Paulo L Onuchic, Sergio R Labra, Ashok A Deniz. Biochim Biophys Acta Proteins Proteom 2019
20
33

Specific Conformational Dynamics and Expansion Underpin a Multi-Step Mechanism for Specific Binding of p27 with Cdk2/Cyclin A.
Maksym Tsytlonok, Katherina Hemmen, George Hamilton, Narendar Kolimi, Suren Felekyan, Claus A M Seidel, Peter Tompa, Hugo Sanabria. J Mol Biol 2020
16
33

Solvent-dependent segmental dynamics in intrinsically disordered proteins.
Nicola Salvi, Anton Abyzov, Martin Blackledge. Sci Adv 2019
26
33

Combining experiments and simulations using the maximum entropy principle.
Wouter Boomsma, Jesper Ferkinghoff-Borg, Kresten Lindorff-Larsen. PLoS Comput Biol 2014
113
33

Replica-Based Protein Structure Sampling Methods: Compromising between Explicit and Implicit Solvents.
Martin Kulke, Norman Geist, Daniel Möller, Walter Langel. J Phys Chem B 2018
11
33

Speed of conformational change: comparing explicit and implicit solvent molecular dynamics simulations.
Ramu Anandakrishnan, Aleksander Drozdetski, Ross C Walker, Alexey V Onufriev. Biophys J 2015
102
33

Unfolded proteins and protein folding studied by NMR.
H Jane Dyson, Peter E Wright. Chem Rev 2004
471
33

Resolving dynamics and function of transient states in single enzyme molecules.
Hugo Sanabria, Dmitro Rodnin, Katherina Hemmen, Thomas-Otavio Peulen, Suren Felekyan, Mark R Fleissner, Mykola Dimura, Felix Koberling, Ralf Kühnemuth, Wayne Hubbell,[...]. Nat Commun 2020
36
33

Characterization of the disordered-to-α-helical transition of IA₃ by SDSL-EPR spectroscopy.
Natasha L Pirman, Eugene Milshteyn, Luis Galiano, Justin C Hewlett, Gail E Fanucci. Protein Sci 2011
25
33

Three-dimensional structure of the complexin/SNARE complex.
Xiaocheng Chen, Diana R Tomchick, Evguenii Kovrigin, Demet Araç, Mischa Machius, Thomas C Südhof, Josep Rizo. Neuron 2002
313
33

Intrinsically Disordered Regions of the DNA-Binding Domain of Human FoxP1 Facilitate Domain Swapping.
Exequiel Medina, Pablo Villalobos, George L Hamilton, Elizabeth A Komives, Hugo Sanabria, César A Ramírez-Sarmiento, Jorge Babul. J Mol Biol 2020
7
33

Single-molecule studies of intrinsically disordered proteins.
Marco Brucale, Benjamin Schuler, Bruno Samorì. Chem Rev 2014
94
33


Microsecond protein dynamics observed at the single-molecule level.
Takuhiro Otosu, Kunihiko Ishii, Tahei Tahara. Nat Commun 2015
47
33



Water dispersion interactions strongly influence simulated structural properties of disordered protein states.
Stefano Piana, Alexander G Donchev, Paul Robustelli, David E Shaw. J Phys Chem B 2015
444
33

Spontaneous Switching among Conformational Ensembles in Intrinsically Disordered Proteins.
Ucheor B Choi, Hugo Sanabria, Tatyana Smirnova, Mark E Bowen, Keith R Weninger. Biomolecules 2019
23
33

Monitoring structural transitions in IDPs by site-directed spin labeling EPR spectroscopy.
Johnny Habchi, Marlène Martinho, Antoine Gruet, Bruno Guigliarelli, Sonia Longhi, Valérie Belle. Methods Mol Biol 2012
9
33

Probing Interdomain Linkers and Protein Supertertiary Structure In Vitro and in Live Cells with Fluorescent Protein Resonance Energy Transfer.
Sujit Basak, Nabanita Sakia, Laura Dougherty, Zhuojun Guo, Fang Wu, Frank Mindlin, Jeffrey W Lary, James L Cole, Feng Ding, Mark E Bowen. J Mol Biol 2021
8
33


Solution structure of the ESCRT-I complex by small-angle X-ray scattering, EPR, and FRET spectroscopy.
Evzen Boura, Bartosz Rózycki, Dawn Z Herrick, Hoi Sung Chung, Jaroslav Vecer, William A Eaton, David S Cafiso, Gerhard Hummer, James H Hurley. Proc Natl Acad Sci U S A 2011
81
33

Intrinsic Disorder in Transmembrane Proteins: Roles in Signaling and Topology Prediction.
Jérôme Bürgi, Bin Xue, Vladimir N Uversky, F Gisou van der Goot. PLoS One 2016
33
33

Discrete molecular dynamics: an efficient and versatile simulation method for fine protein characterization.
David Shirvanyants, Feng Ding, Douglas Tsao, Srinivas Ramachandran, Nikolay V Dokholyan. J Phys Chem B 2012
134
33


The structure of the yeast plasma membrane SNARE complex reveals destabilizing water-filled cavities.
Pavel Strop, Stephen E Kaiser, Marija Vrljic, Axel T Brunger. J Biol Chem 2008
37
33

Identifying the protein folding nucleus using molecular dynamics.
N V Dokholyan, S V Buldyrev, H E Stanley, E I Shakhnovich. J Mol Biol 2000
103
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.