A citation-based method for searching scientific literature

Donald L Helseth, Kamalakar Gulukota, Nicholas Miller, Mathew Yang, Tom Werth, Linda M Sabatini, Mike Bouma, Henry M Dunnenberger, Dyson T Wake, Peter J Hulick, Karen L Kaul, Janaradan D Khandekar. Am J Med Genet C Semin Med Genet 2021
Times Cited: 5







List of co-cited articles
9 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Implementation of a multidisciplinary pharmacogenomics clinic in a community health system.
Henry M Dunnenberger, Matthew Biszewski, Gillian C Bell, Annette Sereika, Holley May, Samuel G Johnson, Peter J Hulick, Janardan Khandekar. Am J Health Syst Pharm 2016
55
40

Standardizing terms for clinical pharmacogenetic test results: consensus terms from the Clinical Pharmacogenetics Implementation Consortium (CPIC).
Kelly E Caudle, Henry M Dunnenberger, Robert R Freimuth, Josh F Peterson, Jonathan D Burlison, Michelle Whirl-Carrillo, Stuart A Scott, Heidi L Rehm, Marc S Williams, Teri E Klein,[...]. Genet Med 2017
226
40

Primary care physician experiences with integrated pharmacogenomic testing in a community health system.
Amy A Lemke, Christina G Hutten Selkirk, Nicole S Glaser, Annette W Sereika, Dyson T Wake, Peter J Hulick, Henry M Dunnenberger. Per Med 2017
25
40

Pharmacogenomic-Based Decision Support to Predict Adherence to Medications.
Carlton Christian, Brittany A Borden, Keith Danahey, Kiang-Teck J Yeo, Xander M R van Wijk, Mark J Ratain, Peter H O'Donnell. Clin Pharmacol Ther 2020
5
40

Design and anticipated outcomes of the eMERGE-PGx project: a multicenter pilot for preemptive pharmacogenomics in electronic health record systems.
L J Rasmussen-Torvik, S C Stallings, A S Gordon, B Almoguera, M A Basford, S J Bielinski, A Brautbar, M H Brilliant, D S Carrell, J J Connolly,[...]. Clin Pharmacol Ther 2014
146
40

Integrating pharmacogenomics into electronic health records with clinical decision support.
J Kevin Hicks, Henry M Dunnenberger, Karl F Gumpper, Cyrine E Haidar, James M Hoffman. Am J Health Syst Pharm 2016
67
40

Incorporation of pharmacogenomics into routine clinical practice: the Clinical Pharmacogenetics Implementation Consortium (CPIC) guideline development process.
Kelly E Caudle, Teri E Klein, James M Hoffman, Daniel J Muller, Michelle Whirl-Carrillo, Li Gong, Ellen M McDonagh, Katrin Sangkuhl, Caroline F Thorn, Matthias Schwab,[...]. Curr Drug Metab 2014
219
40

The IGNITE network: a model for genomic medicine implementation and research.
Kristin Wiisanen Weitzel, Madeline Alexander, Barbara A Bernhardt, Neil Calman, David J Carey, Larisa H Cavallari, Julie R Field, Diane Hauser, Heather A Junkins, Phillip A Levin,[...]. BMC Med Genomics 2016
129
40

Implementing Primary Care Mediated Population Genetic Screening Within an Integrated Health System.
Sean P David, Henry M Dunnenberger, Raabiah Ali, Adam Matsil, Amy A Lemke, Lavisha Singh, Anjali Zimmer, Peter J Hulick. J Am Board Fam Med 2021
2
100

ClinVar: improvements to accessing data.
Melissa J Landrum, Shanmuga Chitipiralla, Garth R Brown, Chao Chen, Baoshan Gu, Jennifer Hart, Douglas Hoffman, Wonhee Jang, Kuljeet Kaur, Chunlei Liu,[...]. Nucleic Acids Res 2020
90
20

The Ensembl Variant Effect Predictor.
William McLaren, Laurent Gil, Sarah E Hunt, Harpreet Singh Riat, Graham R S Ritchie, Anja Thormann, Paul Flicek, Fiona Cunningham. Genome Biol 2016
20

The mutational constraint spectrum quantified from variation in 141,456 humans.
Konrad J Karczewski, Laurent C Francioli, Grace Tiao, Beryl B Cummings, Jessica Alf├Âldi, Qingbo Wang, Ryan L Collins, Kristen M Laricchia, Andrea Ganna, Daniel P Birnbaum,[...]. Nature 2020
20

Legal framework for health cloud: A systematic review.
Zahra Zandesh, Marjan Ghazisaeedi, Murthy V Devarakonda, Mohammad Sayad Haghighi. Int J Med Inform 2019
2
50

Pharmacogenomics: Prescribing Precisely.
Dyson T Wake, Nadim Ilbawi, Henry Mark Dunnenberger, Peter J Hulick. Med Clin North Am 2019
13
20

Genomic medicine--an updated primer.
W Gregory Feero, Alan E Guttmacher, Francis S Collins. N Engl J Med 2010
282
20

dbSNP: the NCBI database of genetic variation.
S T Sherry, M H Ward, M Kholodov, J Baker, L Phan, E M Smigielski, K Sirotkin. Nucleic Acids Res 2001
20

COSMIC: the Catalogue Of Somatic Mutations In Cancer.
John G Tate, Sally Bamford, Harry C Jubb, Zbyslaw Sondka, David M Beare, Nidhi Bindal, Harry Boutselakis, Charlotte G Cole, Celestino Creatore, Elisabeth Dawson,[...]. Nucleic Acids Res 2019
20

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3.
Pablo Cingolani, Adrian Platts, Le Lily Wang, Melissa Coon, Tung Nguyen, Luan Wang, Susan J Land, Xiangyi Lu, Douglas M Ruden. Fly (Austin) 2012
20


TP53 Variations in Human Cancers: New Lessons from the IARC TP53 Database and Genomics Data.
Liacine Bouaoun, Dmitriy Sonkin, Maude Ardin, Monica Hollstein, Graham Byrnes, Jiri Zavadil, Magali Olivier. Hum Mutat 2016
364
20

Variant Review with the Integrative Genomics Viewer.
James T Robinson, Helga Thorvaldsd├│ttir, Aaron M Wenger, Ahmet Zehir, Jill P Mesirov. Cancer Res 2017
302
20

CrossMap: a versatile tool for coordinate conversion between genome assemblies.
Hao Zhao, Zhifu Sun, Jing Wang, Haojie Huang, Jean-Pierre Kocher, Liguo Wang. Bioinformatics 2014
211
20

The Evolution of PharmVar.
Andrea Gaedigk, Katrin Sangkuhl, Michelle Whirl-Carrillo, Greyson P Twist, Teri E Klein, Neil A Miller. Clin Pharmacol Ther 2019
54
20

BRCA Challenge: BRCA Exchange as a global resource for variants in BRCA1 and BRCA2.
Melissa S Cline, Rachel G Liao, Michael T Parsons, Benedict Paten, Faisal Alquaddoomi, Antonis Antoniou, Samantha Baxter, Larry Brody, Robert Cook-Deegan, Amy Coffin,[...]. PLoS Genet 2018
70
20

Adding genetic risk score to family history identifies twice as many high-risk men for prostate cancer: Results from the prostate cancer prevention trial.
Haitao Chen, Xu Liu, Charles B Brendler, Donna P Ankerst, Robin J Leach, Phyllis J Goodman, M Scott Lucia, Catherine M Tangen, Li Wang, Fang-Chi Hsu,[...]. Prostate 2016
37
20

OncoKB: A Precision Oncology Knowledge Base.
Debyani Chakravarty, Jianjiong Gao, Sarah M Phillips, Ritika Kundra, Hongxin Zhang, Jiaojiao Wang, Julia E Rudolph, Rona Yaeger, Tara Soumerai, Moriah H Nissan,[...]. JCO Precis Oncol 2017
720
20

Pharmacogenomics knowledge for personalized medicine.
M Whirl-Carrillo, E M McDonagh, J M Hebert, L Gong, K Sangkuhl, C F Thorn, R B Altman, T E Klein. Clin Pharmacol Ther 2012
956
20


Normalized names for clinical drugs: RxNorm at 6 years.
Stuart J Nelson, Kelly Zeng, John Kilbourne, Tammy Powell, Robin Moore. J Am Med Inform Assoc 2011
182
20

Assessing the reproducibility of exome copy number variations predictions.
Celine S Hong, Larry N Singh, James C Mullikin, Leslie G Biesecker. Genome Med 2016
24
20

Next-generation VariationHunter: combinatorial algorithms for transposon insertion discovery.
Fereydoun Hormozdiari, Iman Hajirasouliha, Phuong Dao, Faraz Hach, Deniz Yorukoglu, Can Alkan, Evan E Eichler, S Cenk Sahinalp. Bioinformatics 2010
144
20

Assessing copy number alterations in targeted, amplicon-based next-generation sequencing data.
Catherine Grasso, Timothy Butler, Katherine Rhodes, Michael Quist, Tanaya L Neff, Stephen Moore, Scott A Tomlins, Erica Reinig, Carol Beadling, Mark Andersen,[...]. J Mol Diagn 2015
92
20


Development and validation of a clinical cancer genomic profiling test based on massively parallel DNA sequencing.
Garrett M Frampton, Alex Fichtenholtz, Geoff A Otto, Kai Wang, Sean R Downing, Jie He, Michael Schnall-Levin, Jared White, Eric M Sanford, Peter An,[...]. Nat Biotechnol 2013
20

The cancer genome.
Michael R Stratton, Peter J Campbell, P Andrew Futreal. Nature 2009
20


BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.
Ken Chen, John W Wallis, Michael D McLellan, David E Larson, Joelle M Kalicki, Craig S Pohl, Sean D McGrath, Michael C Wendl, Qunyuan Zhang, Devin P Locke,[...]. Nat Methods 2009
892
20

LUMPY: a probabilistic framework for structural variant discovery.
Ryan M Layer, Colby Chiang, Aaron R Quinlan, Ira M Hall. Genome Biol 2014
582
20


Sensitive and accurate detection of copy number variants using read depth of coverage.
Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat. Genome Res 2009
347
20

Canvas: versatile and scalable detection of copy number variants.
Eric Roller, Sergii Ivakhno, Steve Lee, Thomas Royce, Stephen Tanner. Bioinformatics 2016
66
20

CONDEL: Detecting Copy Number Variation and Genotyping Deletion Zygosity from Single Tumor Samples Using Sequence Data.
Xiguo Yuan, Jun Bai, Junying Zhang, Liying Yang, Junbo Duan, Yaoyao Li, Meihong Gao. IEEE/ACM Trans Comput Biol Bioinform 2020
17
20

Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data.
Valentina Boeva, Tatiana Popova, Kevin Bleakley, Pierre Chiche, Julie Cappo, Gudrun Schleiermacher, Isabelle Janoueix-Lerosey, Olivier Delattre, Emmanuel Barillot. Bioinformatics 2012
470
20

Interface, information, interaction: a narrative review of design and functional requirements for clinical decision support.
Kristen Miller, Danielle Mosby, Muge Capan, Rebecca Kowalski, Raj Ratwani, Yaman Noaiseh, Rachel Kraft, Sanford Schwartz, William S Weintraub, Ryan Arnold. J Am Med Inform Assoc 2018
35
20

A Tutorial for Pharmacogenomics Implementation Through End-to-End Clinical Decision Support Based on Ten Years of Experience from PREDICT.
Michelle Liu, Cindy L Vnencak-Jones, Bartholomew P Roland, Cheryl L Gatto, Janos L Mathe, Shari L Just, Josh F Peterson, Sara L Van Driest, Asli O Weitkamp. Clin Pharmacol Ther 2021
11
20


Are we heeding the warning signs? Examining providers' overrides of computerized drug-drug interaction alerts in primary care.
Sarah P Slight, Diane L Seger, Karen C Nanji, Insook Cho, Nivethietha Maniam, Patricia C Dykes, David W Bates. PLoS One 2013
48
20


Clinicians' assessments of electronic medication safety alerts in ambulatory care.
Saul N Weingart, Brett Simchowitz, Lawrence Shiman, Daniela Brouillard, Adrienne Cyrulik, Roger B Davis, Thomas Isaac, Michael Massagli, Laurinda Morway, Daniel Z Sands,[...]. Arch Intern Med 2009
73
20

Pharmacogenomics.
Dan M Roden, Howard L McLeod, Mary V Relling, Marc S Williams, George A Mensah, Josh F Peterson, Sara L Van Driest. Lancet 2019
102
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.