A citation-based method for searching scientific literature

Seo Yun Lee, Jae Jin Kim, Kyle M Miller. Brief Funct Genomics 2021
Times Cited: 2







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Human RNA methyltransferase BCDIN3D regulates microRNA processing.
Blerta Xhemalce, Samuel C Robson, Tony Kouzarides. Cell 2012
101
50

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.
Dan Dominissini, Sharon Moshitch-Moshkovitz, Schraga Schwartz, Mali Salmon-Divon, Lior Ungar, Sivan Osenberg, Karen Cesarkas, Jasmine Jacob-Hirsch, Ninette Amariglio, Martin Kupiec,[...]. Nature 2012
50

RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage.
Matthias Schaefer, Tim Pollex, Katharina Hanna, Francesca Tuorto, Madeleine Meusburger, Mark Helm, Frank Lyko. Genes Dev 2010
400
50

Dynamic RNA Modifications in Gene Expression Regulation.
Ian A Roundtree, Molly E Evans, Tao Pan, Chuan He. Cell 2017
951
50



Flipping the script: viral capitalization of RNA modifications.
Matthew T Sacco, Stacy M Horner. Brief Funct Genomics 2021
3
50

Role of RNA modifications in cancer.
Isaia Barbieri, Tony Kouzarides. Nat Rev Cancer 2020
112
50

NSun2-mediated cytosine-5 methylation of vault noncoding RNA determines its processing into regulatory small RNAs.
Shobbir Hussain, Abdulrahim A Sajini, Sandra Blanco, Sabine Dietmann, Patrick Lombard, Yoichiro Sugimoto, Maike Paramor, Joseph G Gleeson, Duncan T Odom, Jernej Ule,[...]. Cell Rep 2013
292
50

The impact of epitranscriptomic marks on post-transcriptional regulation in plants.
Xiang Yu, Bishwas Sharma, Brian D Gregory. Brief Funct Genomics 2021
1
100

Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons.
Kate D Meyer, Yogesh Saletore, Paul Zumbo, Olivier Elemento, Christopher E Mason, Samie R Jaffrey. Cell 2012
50

The non-coding epitranscriptome in cancer.
Valentina Miano, Azzurra Codino, Luca Pandolfini, Isaia Barbieri. Brief Funct Genomics 2021
3
50

Deciphering RNA modifications at base resolution: from chemistry to biology.
Turja K Debnath, Blerta Xhemalçe. Brief Funct Genomics 2021
3
50

Multivalent Histone and DNA Engagement by a PHD/BRD/PWWP Triple Reader Cassette Recruits ZMYND8 to K14ac-Rich Chromatin.
Pavel Savitsky, Tobias Krojer, Takao Fujisawa, Jean-Philippe Lambert, Sarah Picaud, Chen-Yi Wang, Erin K Shanle, Krzysztof Krajewski, Hans Friedrichsen, Alexander Kanapin,[...]. Cell Rep 2016
49
50

CtIP: A DNA damage response protein at the intersection of DNA metabolism.
Nodar Makharashvili, Tanya T Paull. DNA Repair (Amst) 2015
56
50

Structures and Functions of Chromatin Fibers.
Ping Chen, Wei Li, Guohong Li. Annu Rev Biophys 2021
2
50

Chromatin Controls DNA Replication Origin Selection, Lagging-Strand Synthesis, and Replication Fork Rates.
Christoph F Kurat, Joseph T P Yeeles, Harshil Patel, Anne Early, John F X Diffley. Mol Cell 2017
128
50

ZMYND8 Co-localizes with NuRD on Target Genes and Regulates Poly(ADP-Ribose)-Dependent Recruitment of GATAD2A/NuRD to Sites of DNA Damage.
Cornelia G Spruijt, Martijn S Luijsterburg, Roberta Menafra, Rik G H Lindeboom, Pascal W T C Jansen, Raghu Ram Edupuganti, Marijke P Baltissen, Wouter W Wiegant, Moritz C Voelker-Albert, Filomena Matarese,[...]. Cell Rep 2016
59
50

Mammalian SUMO E3-ligases PIAS1 and PIAS4 promote responses to DNA double-strand breaks.
Yaron Galanty, Rimma Belotserkovskaya, Julia Coates, Sophie Polo, Kyle M Miller, Stephen P Jackson. Nature 2009
385
50

A mechanism for the suppression of homologous recombination in G1 cells.
Alexandre Orthwein, Sylvie M Noordermeer, Marcus D Wilson, Sébastien Landry, Radoslav I Enchev, Alana Sherker, Meagan Munro, Jordan Pinder, Jayme Salsman, Graham Dellaire,[...]. Nature 2015
284
50

MAD2L2 controls DNA repair at telomeres and DNA breaks by inhibiting 5' end resection.
Vera Boersma, Nathalie Moatti, Sandra Segura-Bayona, Marieke H Peuscher, Jaco van der Torre, Brigitte A Wevers, Alexandre Orthwein, Daniel Durocher, Jacqueline J L Jacobs. Nature 2015
171
50



Characterization of the SUMO-binding activity of the myeloproliferative and mental retardation (MYM)-type zinc fingers in ZNF261 and ZNF198.
Catherine M Guzzo, Alison Ringel, Eric Cox, Ijeoma Uzoma, Heng Zhu, Seth Blackshaw, Cynthia Wolberger, Michael J Matunis. PLoS One 2014
16
50

Transcriptionally active chromatin recruits homologous recombination at DNA double-strand breaks.
François Aymard, Beatrix Bugler, Christine K Schmidt, Emmanuelle Guillou, Pierre Caron, Sébastien Briois, Jason S Iacovoni, Virginie Daburon, Kyle M Miller, Stephen P Jackson,[...]. Nat Struct Mol Biol 2014
347
50

FAM35A associates with REV7 and modulates DNA damage responses of normal and BRCA1-defective cells.
Junya Tomida, Kei-Ichi Takata, Sarita Bhetawal, Maria D Person, Hsueh-Ping Chao, Dean G Tang, Richard D Wood. EMBO J 2018
49
50

Polycomb group-mediated histone H2A monoubiquitination in epigenome regulation and nuclear processes.
Haithem Barbour, Salima Daou, Michael Hendzel, El Bachir Affar. Nat Commun 2020
11
50

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
122
50

Preserving genome integrity and function: the DNA damage response and histone modifications.
Jae Jin Kim, Seo Yun Lee, Kyle M Miller. Crit Rev Biochem Mol Biol 2019
25
50

Phase separation by the polyhomeotic sterile alpha motif compartmentalizes Polycomb Group proteins and enhances their activity.
Elias Seif, Jin Joo Kang, Charles Sasseville, Olga Senkovich, Alexander Kaltashov, Elodie L Boulier, Ibani Kapur, Chongwoo A Kim, Nicole J Francis. Nat Commun 2020
16
50

RAD51-dependent recruitment of TERRA lncRNA to telomeres through R-loops.
Marianna Feretzaki, Michaela Pospisilova, Rita Valador Fernandes, Thomas Lunardi, Lumir Krejci, Joachim Lingner. Nature 2020
36
50

Exonuclease 1 and its versatile roles in DNA repair.
Guido Keijzers, Dekang Liu, Lene Juel Rasmussen. Crit Rev Biochem Mol Biol 2016
31
50

Functions of Replication Protein A as a Sensor of R Loops and a Regulator of RNaseH1.
Hai Dang Nguyen, Tribhuwan Yadav, Sumanprava Giri, Borja Saez, Timothy A Graubert, Lee Zou. Mol Cell 2017
113
50

53BP1 cooperation with the REV7-shieldin complex underpins DNA structure-specific NHEJ.
Hind Ghezraoui, Catarina Oliveira, Jordan R Becker, Kirstin Bilham, Daniela Moralli, Consuelo Anzilotti, Roman Fischer, Mukta Deobagkar-Lele, Maria Sanchiz-Calvo, Elena Fueyo-Marcos,[...]. Nature 2018
120
50

RNF168 binds and amplifies ubiquitin conjugates on damaged chromosomes to allow accumulation of repair proteins.
Carsten Doil, Niels Mailand, Simon Bekker-Jensen, Patrice Menard, Dorthe Helena Larsen, Rainer Pepperkok, Jan Ellenberg, Stephanie Panier, Daniel Durocher, Jiri Bartek,[...]. Cell 2009
645
50

The RIDDLE syndrome protein mediates a ubiquitin-dependent signaling cascade at sites of DNA damage.
Grant S Stewart, Stephanie Panier, Kelly Townsend, Abdallah K Al-Hakim, Nadine K Kolas, Edward S Miller, Shinichiro Nakada, Jarkko Ylanko, Signe Olivarius, Megan Mendez,[...]. Cell 2009
539
50

The ASCIZ-DYNLL1 axis promotes 53BP1-dependent non-homologous end joining and PARP inhibitor sensitivity.
Jordan R Becker, Raquel Cuella-Martin, Marco Barazas, Rui Liu, Catarina Oliveira, Antony W Oliver, Kirstin Bilham, Abbey B Holt, Andrew N Blackford, Jörg Heierhorst,[...]. Nat Commun 2018
47
50

Resolution of R-loops by INO80 promotes DNA replication and maintains cancer cell proliferation and viability.
Lisa Prendergast, Urszula L McClurg, Rossitsa Hristova, Rolando Berlinguer-Palmini, Sarah Greener, Katie Veitch, Inmaculada Hernandez, Philippe Pasero, Daniel Rico, Jonathan M G Higgins,[...]. Nat Commun 2020
15
50

53BP1: a DSB escort.
Zachary Mirman, Titia de Lange. Genes Dev 2020
58
50

Readers of poly(ADP-ribose): designed to be fit for purpose.
Federico Teloni, Matthias Altmeyer. Nucleic Acids Res 2016
121
50

Ubiquitination-Independent Repression of PRC1 Targets during Neuronal Fate Restriction in the Developing Mouse Neocortex.
Masafumi Tsuboi, Yusuke Kishi, Wakana Yokozeki, Haruhiko Koseki, Yusuke Hirabayashi, Yukiko Gotoh. Dev Cell 2018
33
50

Regulation of chromatin structure via histone post-translational modification and the link to carcinogenesis.
Laura L Thompson, Brent J Guppy, Laryssa Sawchuk, James R Davie, Kirk J McManus. Cancer Metastasis Rev 2013
34
50

ZMYM3 regulates BRCA1 localization at damaged chromatin to promote DNA repair.
Justin W C Leung, Nodar Makharashvili, Poonam Agarwal, Li-Ya Chiu, Renaud Pourpre, Michael B Cammarata, Joe R Cannon, Alana Sherker, Daniel Durocher, Jennifer S Brodbelt,[...]. Genes Dev 2017
41
50

Role of BRCA Mutations in the Modulation of Response to Platinum Therapy.
Sanghamitra Mylavarapu, Asmita Das, Monideepa Roy. Front Oncol 2018
54
50

The nucleosome acidic patch plays a critical role in RNF168-dependent ubiquitination of histone H2A.
Francesca Mattiroli, Michael Uckelmann, Danny D Sahtoe, Willem J van Dijk, Titia K Sixma. Nat Commun 2014
63
50

The shieldin complex mediates 53BP1-dependent DNA repair.
Sylvie M Noordermeer, Salomé Adam, Dheva Setiaputra, Marco Barazas, Stephen J Pettitt, Alexanda K Ling, Michele Olivieri, Alejandro Álvarez-Quilón, Nathalie Moatti, Michal Zimmermann,[...]. Nature 2018
222
50

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
194
50

The SWI/SNF chromatin remodeling complex helps resolve R-loop-mediated transcription-replication conflicts.
Aleix Bayona-Feliu, Sonia Barroso, Sergio Muñoz, Andrés Aguilera. Nat Genet 2021
14
50

OB-Folds and Genome Maintenance: Targeting Protein-DNA Interactions for Cancer Therapy.
Sui Par, Sofia Vaides, Pamela S VanderVere-Carozza, Katherine S Pawelczak, Jason Stewart, John J Turchi. Cancers (Basel) 2021
1
100

Making it or breaking it: DNA methylation and genome integrity.
Anusha Sriraman, Turja K Debnath, Blerta Xhemalce, Kyle M Miller. Essays Biochem 2020
5
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.