A citation-based method for searching scientific literature

Mart M Lamers, Jelte van der Vaart, Kèvin Knoops, Samra Riesebosch, Tim I Breugem, Anna Z Mykytyn, Joep Beumer, Debby Schipper, Karel Bezstarosti, Charlotte D Koopman, Nathalie Groen, Raimond B G Ravelli, Hans Q Duimel, Jeroen A A Demmers, Georges M G M Verjans, Marion P G Koopmans, Mauro J Muraro, Peter J Peters, Hans Clevers, Bart L Haagmans. EMBO J 2021
Times Cited: 82







List of co-cited articles
1201 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Identification of SARS-CoV-2 inhibitors using lung and colonic organoids.
Yuling Han, Xiaohua Duan, Liuliu Yang, Benjamin E Nilsson-Payant, Pengfei Wang, Fuyu Duan, Xuming Tang, Tomer M Yaron, Tuo Zhang, Skyler Uhl,[...]. Nature 2021
217
52

SARS-CoV-2 Cell Entry Depends on ACE2 and TMPRSS2 and Is Blocked by a Clinically Proven Protease Inhibitor.
Markus Hoffmann, Hannah Kleine-Weber, Simon Schroeder, Nadine Krüger, Tanja Herrler, Sandra Erichsen, Tobias S Schiergens, Georg Herrler, Nai-Huei Wu, Andreas Nitsche,[...]. Cell 2020
48

Progenitor identification and SARS-CoV-2 infection in human distal lung organoids.
Ameen A Salahudeen, Shannon S Choi, Arjun Rustagi, Junjie Zhu, Vincent van Unen, Sean M de la O, Ryan A Flynn, Mar Margalef-Català, António J M Santos, Jihang Ju,[...]. Nature 2020
126
46

SARS-CoV-2 productively infects human gut enterocytes.
Mart M Lamers, Joep Beumer, Jelte van der Vaart, Kèvin Knoops, Jens Puschhof, Tim I Breugem, Raimond B G Ravelli, J Paul van Schayck, Anna Z Mykytyn, Hans Q Duimel,[...]. Science 2020
902
45

Human Lung Stem Cell-Based Alveolospheres Provide Insights into SARS-CoV-2-Mediated Interferon Responses and Pneumocyte Dysfunction.
Hiroaki Katsura, Vishwaraj Sontake, Aleksandra Tata, Yoshihiko Kobayashi, Caitlin E Edwards, Brook E Heaton, Arvind Konkimalla, Takanori Asakura, Yu Mikami, Ethan J Fritch,[...]. Cell Stem Cell 2020
131
40

SARS-CoV-2 Reverse Genetics Reveals a Variable Infection Gradient in the Respiratory Tract.
Yixuan J Hou, Kenichi Okuda, Caitlin E Edwards, David R Martinez, Takanori Asakura, Kenneth H Dinnon, Takafumi Kato, Rhianna E Lee, Boyd L Yount, Teresa M Mascenik,[...]. Cell 2020
763
34

Long-term expanding human airway organoids for disease modeling.
Norman Sachs, Angelos Papaspyropoulos, Domenique D Zomer-van Ommen, Inha Heo, Lena Böttinger, Dymph Klay, Fleur Weeber, Guizela Huelsz-Prince, Nino Iakobachvili, Gimano D Amatngalim,[...]. EMBO J 2019
341
32

SARS-CoV-2 Infection of Pluripotent Stem Cell-Derived Human Lung Alveolar Type 2 Cells Elicits a Rapid Epithelial-Intrinsic Inflammatory Response.
Jessie Huang, Adam J Hume, Kristine M Abo, Rhiannon B Werder, Carlos Villacorta-Martin, Konstantinos-Dionysios Alysandratos, Mary Lou Beermann, Chantelle Simone-Roach, Jonathan Lindstrom-Vautrin, Judith Olejnik,[...]. Cell Stem Cell 2020
159
32

Inhibition of SARS-CoV-2 Infections in Engineered Human Tissues Using Clinical-Grade Soluble Human ACE2.
Vanessa Monteil, Hyesoo Kwon, Patricia Prado, Astrid Hagelkrüys, Reiner A Wimmer, Martin Stahl, Alexandra Leopoldi, Elena Garreta, Carmen Hurtado Del Pozo, Felipe Prosper,[...]. Cell 2020
28

A three-dimensional model of human lung development and disease from pluripotent stem cells.
Ya-Wen Chen, Sarah Xuelian Huang, Ana Luisa Rodrigues Toste de Carvalho, Siu-Hong Ho, Mohammad Naimul Islam, Stefano Volpi, Luigi D Notarangelo, Michael Ciancanelli, Jean-Laurent Casanova, Jahar Bhattacharya,[...]. Nat Cell Biol 2017
284
26

Three-Dimensional Human Alveolar Stem Cell Culture Models Reveal Infection Response to SARS-CoV-2.
Jeonghwan Youk, Taewoo Kim, Kelly V Evans, Young-Il Jeong, Yongsuk Hur, Seon Pyo Hong, Je Hyoung Kim, Kijong Yi, Su Yeon Kim, Kwon Joong Na,[...]. Cell Stem Cell 2020
94
26

Differentiated human airway organoids to assess infectivity of emerging influenza virus.
Jie Zhou, Cun Li, Norman Sachs, Man Chun Chiu, Bosco Ho-Yin Wong, Hin Chu, Vincent Kwok-Man Poon, Dong Wang, Xiaoyu Zhao, Lei Wen,[...]. Proc Natl Acad Sci U S A 2018
124
24

Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.
Toshiro Sato, Robert G Vries, Hugo J Snippert, Marc van de Wetering, Nick Barker, Daniel E Stange, Johan H van Es, Arie Abo, Pekka Kujala, Peter J Peters,[...]. Nature 2009
24

A Human Pluripotent Stem Cell-based Platform to Study SARS-CoV-2 Tropism and Model Virus Infection in Human Cells and Organoids.
Liuliu Yang, Yuling Han, Benjamin E Nilsson-Payant, Vikas Gupta, Pengfei Wang, Xiaohua Duan, Xuming Tang, Jiajun Zhu, Zeping Zhao, Fabrice Jaffré,[...]. Cell Stem Cell 2020
358
23

In vitro generation of human pluripotent stem cell derived lung organoids.
Briana R Dye, David R Hill, Michael A H Ferguson, Yu-Hwai Tsai, Melinda S Nagy, Rachel Dyal, James M Wells, Christopher N Mayhew, Roy Nattiv, Ophir D Klein,[...]. Elife 2015
423
21

A Novel Coronavirus from Patients with Pneumonia in China, 2019.
Na Zhu, Dingyu Zhang, Wenling Wang, Xingwang Li, Bo Yang, Jingdong Song, Xiang Zhao, Baoying Huang, Weifeng Shi, Roujian Lu,[...]. N Engl J Med 2020
21

Infection of bat and human intestinal organoids by SARS-CoV-2.
Jie Zhou, Cun Li, Xiaojuan Liu, Man Chun Chiu, Xiaoyu Zhao, Dong Wang, Yuxuan Wei, Andrew Lee, Anna Jinxia Zhang, Hin Chu,[...]. Nat Med 2020
303
21

Recapitulation of SARS-CoV-2 infection and cholangiocyte damage with human liver ductal organoids.
Bing Zhao, Chao Ni, Ran Gao, Yuyan Wang, Li Yang, Jinsong Wei, Ting Lv, Jianqing Liang, Qisheng Zhang, Wei Xu,[...]. Protein Cell 2020
199
20


SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues.
Carly G K Ziegler, Samuel J Allon, Sarah K Nyquist, Ian M Mbano, Vincent N Miao, Constantine N Tzouanas, Yuming Cao, Ashraf S Yousif, Julia Bals, Blake M Hauser,[...]. Cell 2020
19

SARS-CoV-2 Infects the Brain Choroid Plexus and Disrupts the Blood-CSF Barrier in Human Brain Organoids.
Laura Pellegrini, Anna Albecka, Donna L Mallery, Max J Kellner, David Paul, Andrew P Carter, Leo C James, Madeline A Lancaster. Cell Stem Cell 2020
193
19

SARS-CoV-2 targets neurons of 3D human brain organoids.
Anand Ramani, Lisa Müller, Philipp N Ostermann, Elke Gabriel, Pranty Abida-Islam, Andreas Müller-Schiffmann, Aruljothi Mariappan, Olivier Goureau, Henning Gruell, Andreas Walker,[...]. EMBO J 2020
221
19

Human Pluripotent Stem Cell-Derived Neural Cells and Brain Organoids Reveal SARS-CoV-2 Neurotropism Predominates in Choroid Plexus Epithelium.
Fadi Jacob, Sarshan R Pather, Wei-Kai Huang, Feng Zhang, Samuel Zheng Hao Wong, Haowen Zhou, Beatrice Cubitt, Wenqiang Fan, Catherine Z Chen, Miao Xu,[...]. Cell Stem Cell 2020
171
19

Type 2 alveolar cells are stem cells in adult lung.
Christina E Barkauskas, Michael J Cronce, Craig R Rackley, Emily J Bowie, Douglas R Keene, Barry R Stripp, Scott H Randell, Paul W Noble, Brigid L M Hogan. J Clin Invest 2013
863
18

Imbalanced Host Response to SARS-CoV-2 Drives Development of COVID-19.
Daniel Blanco-Melo, Benjamin E Nilsson-Payant, Wen-Chun Liu, Skyler Uhl, Daisy Hoagland, Rasmus Møller, Tristan X Jordan, Kohei Oishi, Maryline Panis, David Sachs,[...]. Cell 2020
18

SARS-CoV-2 infection of primary human lung epithelium for COVID-19 modeling and drug discovery.
Apoorva Mulay, Bindu Konda, Gustavo Garcia, Changfu Yao, Stephen Beil, Jaquelyn M Villalba, Colin Koziol, Chandani Sen, Arunima Purkayastha, Jay K Kolls,[...]. Cell Rep 2021
87
18

Adult stem cell-derived complete lung organoid models emulate lung disease in COVID-19.
Courtney Tindle, MacKenzie Fuller, Ayden Fonseca, Sahar Taheri, Stella-Rita Ibeawuchi, Nathan Beutler, Gajanan Dattatray Katkar, Amanraj Claire, Vanessa Castillo, Moises Hernandez,[...]. Elife 2021
22
68

Efficient generation of lung and airway epithelial cells from human pluripotent stem cells.
Sarah X L Huang, Mohammad Naimul Islam, John O'Neill, Zheng Hu, Yong-Guang Yang, Ya-Wen Chen, Melanie Mumau, Michael D Green, Gordana Vunjak-Novakovic, Jahar Bhattacharya,[...]. Nat Biotechnol 2014
356
17

A pneumonia outbreak associated with a new coronavirus of probable bat origin.
Peng Zhou, Xing-Lou Yang, Xian-Guang Wang, Ben Hu, Lei Zhang, Wei Zhang, Hao-Rui Si, Yan Zhu, Bei Li, Chao-Lin Huang,[...]. Nature 2020
17

Comparative pathogenesis of COVID-19, MERS, and SARS in a nonhuman primate model.
Barry Rockx, Thijs Kuiken, Sander Herfst, Theo Bestebroer, Mart M Lamers, Bas B Oude Munnink, Dennis de Meulder, Geert van Amerongen, Judith van den Brand, Nisreen M A Okba,[...]. Science 2020
566
17

Human organoids: model systems for human biology and medicine.
Jihoon Kim, Bon-Kyoung Koo, Juergen A Knoblich. Nat Rev Mol Cell Biol 2020
419
17

Differentiation of Human Pluripotent Stem Cells into Functional Lung Alveolar Epithelial Cells.
Anjali Jacob, Michael Morley, Finn Hawkins, Katherine B McCauley, J C Jean, Hillary Heins, Cheng-Lun Na, Timothy E Weaver, Marall Vedaie, Killian Hurley,[...]. Cell Stem Cell 2017
221
15

SARS-CoV-2 receptor ACE2 and TMPRSS2 are primarily expressed in bronchial transient secretory cells.
Soeren Lukassen, Robert Lorenz Chua, Timo Trefzer, Nicolas C Kahn, Marc A Schneider, Thomas Muley, Hauke Winter, Michael Meister, Carmen Veith, Agnes W Boots,[...]. EMBO J 2020
600
15

Pulmonary Vascular Endothelialitis, Thrombosis, and Angiogenesis in Covid-19.
Maximilian Ackermann, Stijn E Verleden, Mark Kuehnel, Axel Haverich, Tobias Welte, Florian Laenger, Arno Vanstapel, Christopher Werlein, Helge Stark, Alexandar Tzankov,[...]. N Engl J Med 2020
14

SARS-CoV-2 entry into human airway organoids is serine protease-mediated and facilitated by the multibasic cleavage site.
Anna Z Mykytyn, Tim I Breugem, Samra Riesebosch, Debby Schipper, Petra B van den Doel, Robbert J Rottier, Mart M Lamers, Bart L Haagmans. Elife 2021
63
19

SARS-CoV-2 is transmitted via contact and via the air between ferrets.
Mathilde Richard, Adinda Kok, Dennis de Meulder, Theo M Bestebroer, Mart M Lamers, Nisreen M A Okba, Martje Fentener van Vlissingen, Barry Rockx, Bart L Haagmans, Marion P G Koopmans,[...]. Nat Commun 2020
264
14


Cerebral organoids model human brain development and microcephaly.
Madeline A Lancaster, Magdalena Renner, Carol-Anne Martin, Daniel Wenzel, Louise S Bicknell, Matthew E Hurles, Tessa Homfray, Josef M Penninger, Andrew P Jackson, Juergen A Knoblich. Nature 2013
14

In Vitro and Animal Models for SARS-CoV-2 research.
Kazuo Takayama. Trends Pharmacol Sci 2020
104
14

Revealing Tissue-Specific SARS-CoV-2 Infection and Host Responses using Human Stem Cell-Derived Lung and Cerebral Organoids.
Shashi Kant Tiwari, Shaobo Wang, Davey Smith, Aaron F Carlin, Tariq M Rana. Stem Cell Reports 2021
43
27

Generation of lung organoids from human pluripotent stem cells in vitro.
Alyssa J Miller, Briana R Dye, Daysha Ferrer-Torres, David R Hill, Arend W Overeem, Lonnie D Shea, Jason R Spence. Nat Protoc 2019
142
13

Lung organoids: current uses and future promise.
Christina E Barkauskas, Mei-I Chung, Bryan Fioret, Xia Gao, Hiroaki Katsura, Brigid L M Hogan. Development 2017
187
13

Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China.
Chaolin Huang, Yeming Wang, Xingwang Li, Lili Ren, Jianping Zhao, Yi Hu, Li Zhang, Guohui Fan, Jiuyang Xu, Xiaoying Gu,[...]. Lancet 2020
13

SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes.
Waradon Sungnak, Ni Huang, Christophe Bécavin, Marijn Berg, Rachel Queen, Monika Litvinukova, Carlos Talavera-López, Henrike Maatz, Daniel Reichart, Fotios Sampaziotis,[...]. Nat Med 2020
13

SARS-CoV-2 infects human neural progenitor cells and brain organoids.
Bao-Zhong Zhang, Hin Chu, Shuo Han, Huiping Shuai, Jian Deng, Ye-Fan Hu, Hua-Rui Gong, Andrew Chak-Yiu Lee, Zijiao Zou, Thomas Yau,[...]. Cell Res 2020
161
13

Androgen Signaling Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men.
Ryan M Samuel, Homa Majd, Mikayla N Richter, Zaniar Ghazizadeh, Seyedeh Maryam Zekavat, Albertas Navickas, Jonathan T Ramirez, Hosseinali Asgharian, Camille R Simoneau, Luke R Bonser,[...]. Cell Stem Cell 2020
97
13

Critical Role of Type III Interferon in Controlling SARS-CoV-2 Infection in Human Intestinal Epithelial Cells.
Megan L Stanifer, Carmon Kee, Mirko Cortese, Camila Metz Zumaran, Sergio Triana, Markus Mukenhirn, Hans-Georg Kraeusslich, Theodore Alexandrov, Ralf Bartenschlager, Steeve Boulant. Cell Rep 2020
191
13

Susceptibility of ferrets, cats, dogs, and other domesticated animals to SARS-coronavirus 2.
Jianzhong Shi, Zhiyuan Wen, Gongxun Zhong, Huanliang Yang, Chong Wang, Baoying Huang, Renqiang Liu, Xijun He, Lei Shuai, Ziruo Sun,[...]. Science 2020
974
13


Inflammatory Signals Induce AT2 Cell-Derived Damage-Associated Transient Progenitors that Mediate Alveolar Regeneration.
Jinwook Choi, Jong-Eun Park, Georgia Tsagkogeorga, Motoko Yanagita, Bon-Kyoung Koo, Namshik Han, Joo-Hyeon Lee. Cell Stem Cell 2020
112
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.