A citation-based method for searching scientific literature

Bin Fang, Dongyin Guan, Mitchell A Lazar. Methods Mol Biol 2021
Times Cited: 1







List of co-cited articles
articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Can anxiety damage the brain?
Linda Mah, Claudia Szabuniewicz, Alexandra J Fiocco. Curr Opin Psychiatry 2016
50
100

Enhancer RNAs in cancer: regulation, mechanisms and therapeutic potential.
Joo-Hyung Lee, Feng Xiong, Wenbo Li. RNA Biol 2020
11
100

HeRA: an atlas of enhancer RNAs across human tissues.
Zhao Zhang, Wei Hong, Hang Ruan, Ying Jing, Shengli Li, Yaoming Liu, Jun Wang, Wenbo Li, Lixia Diao, Leng Han. Nucleic Acids Res 2021
5
100

Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA.
Dong Wang, Ivan Garcia-Bassets, Chris Benner, Wenbo Li, Xue Su, Yiming Zhou, Jinsong Qiu, Wen Liu, Minna U Kaikkonen, Kenneth A Ohgi,[...]. Nature 2011
589
100

Noncoding transcription at enhancers: general principles and functional models.
Gioacchino Natoli, Jean-Christophe Andrau. Annu Rev Genet 2012
252
100

Global changes in the nuclear positioning of genes and intra- and interdomain genomic interactions that orchestrate B cell fate.
Yin C Lin, Christopher Benner, Robert Mansson, Sven Heinz, Kazuko Miyazaki, Masaki Miyazaki, Vivek Chandra, Claudia Bossen, Christopher K Glass, Cornelis Murre. Nat Immunol 2012
184
100


Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.
Erik Arner, Carsten O Daub, Kristoffer Vitting-Seerup, Robin Andersson, Berit Lilje, Finn Drabløs, Andreas Lennartsson, Michelle Rönnerblad, Olga Hrydziuszko, Morana Vitezic,[...]. Science 2015
326
100

Widespread transcription at neuronal activity-regulated enhancers.
Tae-Kyung Kim, Martin Hemberg, Jesse M Gray, Allen M Costa, Daniel M Bear, Jing Wu, David A Harmin, Mike Laptewicz, Kellie Barbara-Haley, Scott Kuersten,[...]. Nature 2010
100

Transcription of Mammalian cis-Regulatory Elements Is Restrained by Actively Enforced Early Termination.
Liv M I Austenaa, Iros Barozzi, Marta Simonatto, Silvia Masella, Giulia Della Chiara, Serena Ghisletti, Alessia Curina, Elzo de Wit, Britta A M Bouwman, Stefano de Pretis,[...]. Mol Cell 2015
44
100

Altered Expression of Long Noncoding RNAs in Blood After Ischemic Stroke and Proximity to Putative Stroke Risk Loci.
Cheryl Dykstra-Aiello, Glen C Jickling, Bradley P Ander, Natasha Shroff, Xinhua Zhan, DaZhi Liu, Heather Hull, Miles Orantia, Boryana S Stamova, Frank R Sharp. Stroke 2016
82
100

The long-range interaction landscape of gene promoters.
Amartya Sanyal, Bryan R Lajoie, Gaurav Jain, Job Dekker. Nature 2012
931
100

Genetic heterogeneity in Rubinstein-Taybi syndrome: mutations in both the CBP and EP300 genes cause disease.
Jeroen H Roelfsema, Stefan J White, Yavuz Ariyürek, Deborah Bartholdi, Dunja Niedrist, Francesco Papadia, Carlos A Bacino, Johan T den Dunnen, Gert-Jan B van Ommen, Martijn H Breuning,[...]. Am J Hum Genet 2005
285
100

Alterations of androgen receptor-regulated enhancer RNAs (eRNAs) contribute to enzalutamide resistance in castration-resistant prostate cancer.
Jingwen Zhao, Yu Zhao, Liguo Wang, Jun Zhang, R Jeffrey Karnes, Manish Kohli, Guixia Wang, Haojie Huang. Oncotarget 2016
20
100

Epstein-Barr virus super-enhancer eRNAs are essential for MYC oncogene expression and lymphoblast proliferation.
Jun Liang, Hufeng Zhou, Catherine Gerdt, Min Tan, Tyler Colson, Kenneth M Kaye, Elliott Kieff, Bo Zhao. Proc Natl Acad Sci U S A 2016
46
100


Neuronal identity genes regulated by super-enhancers are preferentially down-regulated in the striatum of Huntington's disease mice.
Mayada Achour, Stéphanie Le Gras, Céline Keime, Frédéric Parmentier, François-Xavier Lejeune, Anne-Laurence Boutillier, Christian Néri, Irwin Davidson, Karine Merienne. Hum Mol Genet 2015
49
100

Differential activity of transcribed enhancers in the prefrontal cortex of 537 cases with schizophrenia and controls.
Mads E Hauberg, John F Fullard, Lingxue Zhu, Ariella T Cohain, Claudia Giambartolomei, Ruth Misir, Sarah Reach, Jessica S Johnson, Minghui Wang, Manuel Mattheisen,[...]. Mol Psychiatry 2019
18
100

Regional and cellular gene expression changes in human Huntington's disease brain.
Angela Hodges, Andrew D Strand, Aaron K Aragaki, Alexandre Kuhn, Thierry Sengstag, Gareth Hughes, Lyn A Elliston, Cathy Hartog, Darlene R Goldstein, Doris Thu,[...]. Hum Mol Genet 2006
522
100

Modulation of Brain Pathology by Enhancer RNAs in Cerebral Ischemia.
Sunil Bhattarai, Aparna Akella, Atish Gandhi, Ashutosh Dharap. Mol Neurobiol 2021
4
100

Transcription factor trapping by RNA in gene regulatory elements.
Alla A Sigova, Brian J Abraham, Xiong Ji, Benoit Molinie, Nancy M Hannett, Yang Eric Guo, Mohini Jangi, Cosmas C Giallourakis, Phillip A Sharp, Richard A Young. Science 2015
224
100


Cis-acting lnc-eRNA SEELA directly binds histone H4 to promote histone recognition and leukemia progression.
Ke Fang, Wei Huang, Yu-Meng Sun, Tian-Qi Chen, Zhan-Cheng Zeng, Qian-Qian Yang, Qi Pan, Cai Han, Lin-Yu Sun, Xue-Qun Luo,[...]. Genome Biol 2020
3
100

Global transcriptional activity dynamics reveal functional enhancer RNAs.
Yoon Jung Kim, Peng Xie, Lian Cao, Michael Q Zhang, Tae Hoon Kim. Genome Res 2018
16
100

Individual common variants exert weak effects on the risk for autism spectrum disorders.
Richard Anney, Lambertus Klei, Dalila Pinto, Joana Almeida, Elena Bacchelli, Gillian Baird, Nadia Bolshakova, Sven Bölte, Patrick F Bolton, Thomas Bourgeron,[...]. Hum Mol Genet 2012
231
100

Enhancer transcripts mark active estrogen receptor binding sites.
Nasun Hah, Shino Murakami, Anusha Nagari, Charles G Danko, W Lee Kraus. Genome Res 2013
301
100

Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation.
Chen-Lin Hsieh, Teng Fei, Yiwen Chen, Tiantian Li, Yanfei Gao, Xiaodong Wang, Tong Sun, Christopher J Sweeney, Gwo-Shu Mary Lee, Shaoyong Chen,[...]. Proc Natl Acad Sci U S A 2014
207
100


eRNAs are required for p53-dependent enhancer activity and gene transcription.
Carlos A Melo, Jarno Drost, Patrick J Wijchers, Harmen van de Werken, Elzo de Wit, Joachim A F Oude Vrielink, Ran Elkon, Sónia A Melo, Nicolas Léveillé, Raghu Kalluri,[...]. Mol Cell 2013
362
100

Epigenetic regulation of IFITM1 expression in lipopolysaccharide-stimulated human mesenchymal stromal cells.
Sun Hwa Kim, Hae In Choi, Mi Ran Choi, Ga Yeong An, Bert Binas, Kyoung Hwa Jung, Young Gyu Chai. Stem Cell Res Ther 2020
5
100

A genome-wide scan for common alleles affecting risk for autism.
Richard Anney, Lambertus Klei, Dalila Pinto, Regina Regan, Judith Conroy, Tiago R Magalhaes, Catarina Correia, Brett S Abrahams, Nuala Sykes, Alistair T Pagnamenta,[...]. Hum Mol Genet 2010
402
100

Discovery of novel stroke-responsive lncRNAs in the mouse cortex using genome-wide RNA-seq.
Sunil Bhattarai, Fabrizio Pontarelli, Emily Prendergast, Ashutosh Dharap. Neurobiol Dis 2017
31
100

9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response.
Olivier Harismendy, Dimple Notani, Xiaoyuan Song, Nazli G Rahim, Bogdan Tanasa, Nathaniel Heintzman, Bing Ren, Xiang-Dong Fu, Eric J Topol, Michael G Rosenfeld,[...]. Nature 2011
442
100

Enhancers active in dopamine neurons are a primary link between genetic variation and neuropsychiatric disease.
Xianjun Dong, Zhixiang Liao, David Gritsch, Yavor Hadzhiev, Yunfei Bai, Joseph J Locascio, Boris Guennewig, Ganqiang Liu, Cornelis Blauwendraat, Tao Wang,[...]. Nat Neurosci 2018
33
100

Increased expression of the PI3K enhancer PIKE mediates deficits in synaptic plasticity and behavior in fragile X syndrome.
Christina Gross, Chia-Wei Chang, Seth M Kelly, Aditi Bhattacharya, Sean M J McBride, Scott W Danielson, Michael Q Jiang, Chi Bun Chan, Keqiang Ye, Jay R Gibson,[...]. Cell Rep 2015
65
100

Slit-Robo signaling.
Heike Blockus, Alain Chédotal. Development 2016
151
100

Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers.
Leighton J Core, André L Martins, Charles G Danko, Colin T Waters, Adam Siepel, John T Lis. Nat Genet 2014
339
100


Activating RNAs associate with Mediator to enhance chromatin architecture and transcription.
Fan Lai, Ulf A Orom, Matteo Cesaroni, Malte Beringer, Dylan J Taatjes, Gerd A Blobel, Ramin Shiekhattar. Nature 2013
570
100

Landscape of transcription in human cells.
Sarah Djebali, Carrie A Davis, Angelika Merkel, Alex Dobin, Timo Lassmann, Ali Mortazavi, Andrea Tanzer, Julien Lagarde, Wei Lin, Felix Schlesinger,[...]. Nature 2012
100

Enhancer RNAs.
Wenbo Li, Michael T Y Lam, Dimple Notani. Cell Cycle 2014
12
100

The corepressors GPS2 and SMRT control enhancer and silencer remodeling via eRNA transcription during inflammatory activation of macrophages.
Zhiqiang Huang, Ning Liang, Saioa Goñi, Anastasios Damdimopoulos, Cheng Wang, Raphaelle Ballaire, Jennifer Jager, Henri Niskanen, Hongya Han, Tomas Jakobsson,[...]. Mol Cell 2021
7
100

Enhancer RNAs are an important regulatory layer of the epigenome.
Vittorio Sartorelli, Shannon M Lauberth. Nat Struct Mol Biol 2020
50
100


Enhancer RNAs: the new molecules of transcription.
Fan Lai, Ramin Shiekhattar. Curr Opin Genet Dev 2014
37
100

Coexpression networks identify brain region-specific enhancer RNAs in the human brain.
Pu Yao, Peijie Lin, Akira Gokoolparsadh, Amelia Assareh, Mike W C Thang, Irina Voineagu. Nat Neurosci 2015
49
100

Functional Genomics Identify a Regulatory Risk Variation rs4420550 in the 16p11.2 Schizophrenia-Associated Locus.
Hong Chang, Xin Cai, Hui-Juan Li, Wei-Peng Liu, Li-Juan Zhao, Chu-Yi Zhang, Jun-Yang Wang, Jie-Wei Liu, Xiao-Lei Ma, Lu Wang,[...]. Biol Psychiatry 2021
5
100

Identification and Analysis of p53-Regulated Enhancers in Hepatic Carcinoma.
Yin Zhang, Mingming Qian, Fei Tang, Qingqing Huang, Wenzhu Wang, Yanjing Li, Zhixue Li, Beiping Li, Zhengliang Qiu, Junjie Yue,[...]. Front Bioeng Biotechnol 2020
2
100


Immunogenomic Profiling Demonstrate AC003092.1 as an Immune-Related eRNA in Glioblastoma Multiforme.
Xiao-Yu Guo, Sheng Zhong, Zhen-Ning Wang, Tian Xie, Hao Duan, Jia-Yu Zhang, Guan-Hua Zhang, Lun Liang, Run Cui, Hong-Rong Hu,[...]. Front Genet 2021
4
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.