A citation-based method for searching scientific literature

Andrea D Edwards, John C Marecki, Alicia K Byrd, Jun Gao, Kevin D Raney. Nucleic Acids Res 2021
Times Cited: 11







List of co-cited articles
157 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
54

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
54

A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro.
Eun-Ang Raiber, Ramon Kranaster, Enid Lam, Mehran Nikan, Shankar Balasubramanian. Nucleic Acids Res 2012
106
45

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
45

Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.
Raphaël Rodriguez, Kyle M Miller, Josep V Forment, Charles R Bradshaw, Mehran Nikan, Sébastien Britton, Tobias Oelschlaegel, Blerta Xhemalce, Shankar Balasubramanian, Stephen P Jackson. Nat Chem Biol 2012
425
45

DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential.
Robert Hänsel-Hertsch, Marco Di Antonio, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2017
415
36

DNA damage and genome instability by G-quadruplex ligands are mediated by R loops in human cancer cells.
Alessio De Magis, Stefano G Manzo, Marco Russo, Jessica Marinello, Rita Morigi, Olivier Sordet, Giovanni Capranico. Proc Natl Acad Sci U S A 2019
120
36

The regulatory G4 motif of the Kirsten ras (KRAS) gene is sensitive to guanine oxidation: implications on transcription.
Susanna Cogoi, Annalisa Ferino, Giulia Miglietta, Erik B Pedersen, Luigi E Xodo. Nucleic Acids Res 2018
59
36

Helix formation by guanylic acid.
M GELLERT, M N LIPSETT, D R DAVIES. Proc Natl Acad Sci U S A 1962
36

YY1 interacts with guanine quadruplexes to regulate DNA looping and gene expression.
Lin Li, Preston Williams, Wendan Ren, Michelle Y Wang, Zi Gao, Weili Miao, Ming Huang, Jikui Song, Yinsheng Wang. Nat Chem Biol 2021
25
36

G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
398
36

CX-5461 is a DNA G-quadruplex stabilizer with selective lethality in BRCA1/2 deficient tumours.
Hong Xu, Marco Di Antonio, Steven McKinney, Veena Mathew, Brandon Ho, Nigel J O'Neil, Nancy Dos Santos, Jennifer Silvester, Vivien Wei, Jessica Garcia,[...]. Nat Commun 2017
246
36

Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome.
Shrabasti Roychoudhury, Suravi Pramanik, Hannah L Harris, Mason Tarpley, Aniruddha Sarkar, Gaelle Spagnol, Paul L Sorgen, Dipanjan Chowdhury, Vimla Band, David Klinkebiel,[...]. Proc Natl Acad Sci U S A 2020
33
36

G-quadruplexes are transcription factor binding hubs in human chromatin.
Jochen Spiegel, Sergio Martínez Cuesta, Santosh Adhikari, Robert Hänsel-Hertsch, David Tannahill, Shankar Balasubramanian. Genome Biol 2021
35
36

R-loop induced G-quadruplex in non-template promotes transcription by successive R-loop formation.
Chun-Ying Lee, Christina McNerney, Kevin Ma, Walter Zhao, Ashley Wang, Sua Myong. Nat Commun 2020
31
36

The KRAS promoter responds to Myc-associated zinc finger and poly(ADP-ribose) polymerase 1 proteins, which recognize a critical quadruplex-forming GA-element.
Susanna Cogoi, Manikandan Paramasivam, Alexandro Membrino, Kazunari K Yokoyama, Luigi E Xodo. J Biol Chem 2010
95
36

Molecular mechanism of G-quadruplex unwinding helicase: sequential and repetitive unfolding of G-quadruplex by Pif1 helicase.
Xi-Miao Hou, Wen-Qiang Wu, Xiao-Lei Duan, Na-Nv Liu, Hai-Hong Li, Jing Fu, Shuo-Xing Dou, Ming Li, Xu-Guang Xi. Biochem J 2015
57
36

Pif1 family helicases suppress genome instability at G-quadruplex motifs.
Katrin Paeschke, Matthew L Bochman, P Daniela Garcia, Petr Cejka, Katherine L Friedman, Stephen C Kowalczykowski, Virginia A Zakian. Nature 2013
305
36

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
761
36

Periodic DNA patrolling underlies diverse functions of Pif1 on R-loops and G-rich DNA.
Ruobo Zhou, Jichuan Zhang, Matthew L Bochman, Virginia A Zakian, Taekjip Ha. Elife 2014
117
36

G-quadruplex recognition and remodeling by the FANCJ helicase.
Colin G Wu, Maria Spies. Nucleic Acids Res 2016
55
36

Timeless couples G-quadruplex detection with processing by DDX11 helicase during DNA replication.
Leticia K Lerner, Sandro Holzer, Mairi L Kilkenny, Saša Šviković, Pierre Murat, Davide Schiavone, Cara B Eldridge, Alice Bittleston, Joseph D Maman, Dana Branzei,[...]. EMBO J 2020
27
27

G-quadruplexes and helicases.
Oscar Mendoza, Anne Bourdoncle, Jean-Baptiste Boulé, Robert M Brosh, Jean-Louis Mergny. Nucleic Acids Res 2016
238
27


The regulation and functions of DNA and RNA G-quadruplexes.
Dhaval Varshney, Jochen Spiegel, Katherine Zyner, David Tannahill, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2020
253
27

Specialization among iron-sulfur cluster helicases to resolve G-quadruplex DNA structures that threaten genomic stability.
Sanjay Kumar Bharti, Joshua A Sommers, Fourbears George, Jochen Kuper, Florian Hamon, Kazuo Shin-ya, Marie-Paule Teulade-Fichou, Caroline Kisker, Robert M Brosh. J Biol Chem 2013
84
27

Anticancer activity of CX-3543: a direct inhibitor of rRNA biogenesis.
Denis Drygin, Adam Siddiqui-Jain, Sean O'Brien, Michael Schwaebe, Amy Lin, Josh Bliesath, Caroline B Ho, Chris Proffitt, Katy Trent, Jeffrey P Whitten,[...]. Cancer Res 2009
351
27

Single-molecule visualization of DNA G-quadruplex formation in live cells.
Marco Di Antonio, Aleks Ponjavic, Antanas Radzevičius, Rohan T Ranasinghe, Marco Catalano, Xiaoyun Zhang, Jiazhen Shen, Lisa-Maria Needham, Steven F Lee, David Klenerman,[...]. Nat Chem 2020
95
27

Oxidative DNA damage is epigenetic by regulating gene transcription via base excision repair.
Aaron M Fleming, Yun Ding, Cynthia J Burrows. Proc Natl Acad Sci U S A 2017
179
27

G-quadruplex-R-loop interactions and the mechanism of anticancer G-quadruplex binders.
Giulia Miglietta, Marco Russo, Giovanni Capranico. Nucleic Acids Res 2020
32
27

Structural polymorphism within a regulatory element of the human KRAS promoter: formation of G4-DNA recognized by nuclear proteins.
Susanna Cogoi, Manikandan Paramasivam, Barbara Spolaore, Luigi E Xodo. Nucleic Acids Res 2008
98
27

The Structure and Function of DNA G-Quadruplexes.
Jochen Spiegel, Santosh Adhikari, Shankar Balasubramanian. Trends Chem 2020
204
27

G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
853
27

Intracellular transcription of G-rich DNAs induces formation of G-loops, novel structures containing G4 DNA.
Michelle L Duquette, Priya Handa, Jack A Vincent, Andrew F Taylor, Nancy Maizels. Genes Dev 2004
377
27

G-quadruplex formation in telomeres enhances POT1/TPP1 protection against RPA binding.
Sujay Ray, Jigar N Bandaria, Mohammad H Qureshi, Ahmet Yildiz, Hamza Balci. Proc Natl Acad Sci U S A 2014
91
27

Assembly of a G-Quadruplex Repair Complex by the FANCJ DNA Helicase and the REV1 Polymerase.
Kaitlin Lowran, Laura Campbell, Phillip Popp, Colin G Wu. Genes (Basel) 2019
10
30

Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo.
Katrin Paeschke, Tomas Simonsson, Jan Postberg, Daniela Rhodes, Hans Joachim Lipps. Nat Struct Mol Biol 2005
412
27

A novel small molecule that alters shelterin integrity and triggers a DNA-damage response at telomeres.
Raphaël Rodriguez, Sebastian Müller, Justin A Yeoman, Chantal Trentesaux, Jean-François Riou, Shankar Balasubramanian. J Am Chem Soc 2008
266
27

FANCJ promotes DNA synthesis through G-quadruplex structures.
Pau Castillo Bosch, Sandra Segura-Bayona, Wouter Koole, Jane T van Heteren, James M Dewar, Marcel Tijsterman, Puck Knipscheer. EMBO J 2014
83
27


Truncated G-Quadruplex Isomers Cross-Talk with the Transcription Factors To Maintain Homeostatic Equilibria in c-MYC Transcription.
Pallabi Sengupta, Apoorva Bhattacharya, Gaurisankar Sa, Tanya Das, Subhrangsu Chatterjee. Biochemistry 2019
13
27

Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
693
27

Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36.
Michael C Chen, Ramreddy Tippana, Natalia A Demeshkina, Pierre Murat, Shankar Balasubramanian, Sua Myong, Adrian R Ferré-D'Amaré. Nature 2018
126
27


G quadruplexes are genomewide targets of transcriptional helicases XPB and XPD.
Lucas T Gray, Aarthy C Vallur, Johanna Eddy, Nancy Maizels. Nat Chem Biol 2014
139
27

Mechanistic insight into the interaction of BLM helicase with intra-strand G-quadruplex structures.
Sujoy Chatterjee, Jennifer Zagelbaum, Pavel Savitsky, Andreas Sturzenegger, Diana Huttner, Pavel Janscak, Ian D Hickson, Opher Gileadi, Eli Rothenberg. Nat Commun 2014
67
27


Identification and characterization of nucleolin as a c-myc G-quadruplex-binding protein.
Verónica González, Kexiao Guo, Laurence Hurley, Daekyu Sun. J Biol Chem 2009
205
27


Identification of LARK as a novel and conserved G-quadruplex binding protein in invertebrates and vertebrates.
Kangkang Niu, Lijun Xiang, Ying Jin, Yuling Peng, Feng Wu, Wenhuan Tang, Xiaojuan Zhang, Huimin Deng, Hui Xiang, Sheng Li,[...]. Nucleic Acids Res 2019
20
27


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.