A citation-based method for searching scientific literature

Anna Maria Ranzoni, Andrea Tangherloni, Ivan Berest, Simone Giovanni Riva, Brynelle Myers, Paulina M Strzelecka, Jiarui Xu, Elisa Panada, Irina Mohorianu, Judith B Zaugg, Ana Cvejic. Cell Stem Cell 2021
Times Cited: 21







List of co-cited articles
102 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Single-cell chromatin accessibility reveals principles of regulatory variation.
Jason D Buenrostro, Beijing Wu, Ulrike M Litzenburger, Dave Ruff, Michael L Gonzales, Michael P Snyder, Howard Y Chang, William J Greenleaf. Nature 2015
817
33

Decoding human fetal liver haematopoiesis.
Dorin-Mirel Popescu, Rachel A Botting, Emily Stephenson, Kile Green, Simone Webb, Laura Jardine, Emily F Calderbank, Krzysztof Polanski, Issac Goh, Mirjana Efremova,[...]. Nature 2019
141
28

Human haematopoietic stem cell lineage commitment is a continuous process.
Lars Velten, Simon F Haas, Simon Raffel, Sandra Blaszkiewicz, Saiful Islam, Bianca P Hennig, Christoph Hirche, Christoph Lutz, Eike C Buss, Daniel Nowak,[...]. Nat Cell Biol 2017
347
23

Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells.
Allon M Klein, Linas Mazutis, Ilke Akartuna, Naren Tallapragada, Adrian Veres, Victor Li, Leonid Peshkin, David A Weitz, Marc W Kirschner. Cell 2015
23

Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation.
Jason D Buenrostro, M Ryan Corces, Caleb A Lareau, Beijing Wu, Alicia N Schep, Martin J Aryee, Ravindra Majeti, Howard Y Chang, William J Greenleaf. Cell 2018
206
19

Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion.
Ansuman T Satpathy, Jeffrey M Granja, Kathryn E Yost, Yanyan Qi, Francesca Meschi, Geoffrey P McDermott, Brett N Olsen, Maxwell R Mumbach, Sarah E Pierce, M Ryan Corces,[...]. Nat Biotechnol 2019
170
19

Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
19

Multiplex single cell profiling of chromatin accessibility by combinatorial cellular indexing.
Darren A Cusanovich, Riza Daza, Andrew Adey, Hannah A Pliner, Lena Christiansen, Kevin L Gunderson, Frank J Steemers, Cole Trapnell, Jay Shendure. Science 2015
486
19

Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
19

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
19

Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data.
Hannah A Pliner, Jonathan S Packer, José L McFaline-Figueroa, Darren A Cusanovich, Riza M Daza, Delasa Aghamirzaie, Sanjay Srivatsan, Xiaojie Qiu, Dana Jackson, Anna Minkina,[...]. Mol Cell 2018
150
19

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
19

A rapid and robust method for single cell chromatin accessibility profiling.
Xi Chen, Ricardo J Miragaia, Kedar Nath Natarajan, Sarah A Teichmann. Nat Commun 2018
61
14

Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia.
Jeffrey M Granja, Sandy Klemm, Lisa M McGinnis, Arwa S Kathiria, Anja Mezger, M Ryan Corces, Benjamin Parks, Eric Gars, Michaela Liedtke, Grace X Y Zheng,[...]. Nat Biotechnol 2019
79
14

Remodeling of Bone Marrow Hematopoietic Stem Cell Niches Promotes Myeloid Cell Expansion during Premature or Physiological Aging.
Ya-Hsuan Ho, Raquel Del Toro, José Rivera-Torres, Justyna Rak, Claudia Korn, Andrés García-García, David Macías, Cristina González-Gómez, Alberto Del Monte, Monika Wittner,[...]. Cell Stem Cell 2019
90
14

Combined single-cell and spatial transcriptomics reveal the molecular, cellular and spatial bone marrow niche organization.
Chiara Baccin, Jude Al-Sabah, Lars Velten, Patrick M Helbling, Florian Grünschläger, Pablo Hernández-Malmierca, César Nombela-Arrieta, Lars M Steinmetz, Andreas Trumpp, Simon Haas. Nat Cell Biol 2020
149
14

Hematopoiesis: a human perspective.
Sergei Doulatov, Faiyaz Notta, Elisa Laurenti, John E Dick. Cell Stem Cell 2012
448
14

The bone marrow microenvironment at single-cell resolution.
Anastasia N Tikhonova, Igor Dolgalev, Hai Hu, Kishor K Sivaraj, Edlira Hoxha, Álvaro Cuesta-Domínguez, Sandra Pinho, Ilseyar Akhmetzyanova, Jie Gao, Matthew Witkowski,[...]. Nature 2019
271
14

SCENIC: single-cell regulatory network inference and clustering.
Sara Aibar, Carmen Bravo González-Blas, Thomas Moerman, Vân Anh Huynh-Thu, Hana Imrichova, Gert Hulselmans, Florian Rambow, Jean-Christophe Marine, Pierre Geurts, Jan Aerts,[...]. Nat Methods 2017
698
14

Distinct routes of lineage development reshape the human blood hierarchy across ontogeny.
Faiyaz Notta, Sasan Zandi, Naoya Takayama, Stephanie Dobson, Olga I Gan, Gavin Wilson, Kerstin B Kaufmann, Jessica McLeod, Elisa Laurenti, Cyrille F Dunant,[...]. Science 2016
391
14

Lineage tracing on transcriptional landscapes links state to fate during differentiation.
Caleb Weinreb, Alejo Rodriguez-Fraticelli, Fernando D Camargo, Allon M Klein. Science 2020
133
14


Molecular transitions in early progenitors during human cord blood hematopoiesis.
Shiwei Zheng, Efthymia Papalexi, Andrew Butler, William Stephenson, Rahul Satija. Mol Syst Biol 2018
64
14

Simultaneous epitope and transcriptome measurement in single cells.
Marlon Stoeckius, Christoph Hafemeister, William Stephenson, Brian Houck-Loomis, Pratip K Chattopadhyay, Harold Swerdlow, Rahul Satija, Peter Smibert. Nat Methods 2017
739
14

Hematopoietic stem cells proliferate until after birth and show a reversible phase-specific engraftment defect.
Michelle B Bowie, Kristen D McKnight, David G Kent, Lindsay McCaffrey, Pamela A Hoodless, Connie J Eaves. J Clin Invest 2006
234
14

Lineage-specific and single-cell chromatin accessibility charts human hematopoiesis and leukemia evolution.
M Ryan Corces, Jason D Buenrostro, Beijing Wu, Peyton G Greenside, Steven M Chan, Julie L Koenig, Michael P Snyder, Jonathan K Pritchard, Anshul Kundaje, William J Greenleaf,[...]. Nat Genet 2016
433
14

Blood Development: Hematopoietic Stem Cell Dependence and Independence.
Elaine Dzierzak, Anna Bigas. Cell Stem Cell 2018
114
14

A human cell atlas of fetal chromatin accessibility.
Silvia Domcke, Andrew J Hill, Riza M Daza, Junyue Cao, Diana R O'Day, Hannah A Pliner, Kimberly A Aldinger, Dmitry Pokholok, Fan Zhang, Jennifer H Milbank,[...]. Science 2020
51
14

Human haematopoietic stem cell development: from the embryo to the dish.
Andrejs Ivanovs, Stanislav Rybtsov, Elizabeth S Ng, Edouard G Stanley, Andrew G Elefanty, Alexander Medvinsky. Development 2017
94
14

Efficient integration of heterogeneous single-cell transcriptomes using Scanorama.
Brian Hie, Bryan Bryson, Bonnie Berger. Nat Biotechnol 2019
139
14

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
14

CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq.
Tamar Hashimshony, Naftalie Senderovich, Gal Avital, Agnes Klochendler, Yaron de Leeuw, Leon Anavy, Dave Gennert, Shuqiang Li, Kenneth J Livak, Orit Rozenblatt-Rosen,[...]. Genome Biol 2016
431
14

The accessible chromatin landscape of the murine hippocampus at single-cell resolution.
John R Sinnamon, Kristof A Torkenczy, Michael W Linhoff, Sarah A Vitak, Ryan M Mulqueen, Hannah A Pliner, Cole Trapnell, Frank J Steemers, Gail Mandel, Andrew C Adey. Genome Res 2019
26
14

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility.
Darren A Cusanovich, Andrew J Hill, Delasa Aghamirzaie, Riza M Daza, Hannah A Pliner, Joel B Berletch, Galina N Filippova, Xingfan Huang, Lena Christiansen, William S DeWitt,[...]. Cell 2018
222
14

Haematopoietic stem cell activity and interactions with the niche.
Sandra Pinho, Paul S Frenette. Nat Rev Mol Cell Biol 2019
241
14

A comprehensive single cell transcriptional landscape of human hematopoietic progenitors.
Danilo Pellin, Mariana Loperfido, Cristina Baricordi, Samuel L Wolock, Annita Montepeloso, Olga K Weinberg, Alessandra Biffi, Allon M Klein, Luca Biasco. Nat Commun 2019
80
14

Clonal evolution of acute myeloid leukemia revealed by high-throughput single-cell genomics.
Kiyomi Morita, Feng Wang, Katharina Jahn, Tianyuan Hu, Tomoyuki Tanaka, Yuya Sasaki, Jack Kuipers, Sanam Loghavi, Sa A Wang, Yuanqing Yan,[...]. Nat Commun 2020
57
9

High-throughput single-cell ChIP-seq identifies heterogeneity of chromatin states in breast cancer.
Kevin Grosselin, Adeline Durand, Justine Marsolier, Adeline Poitou, Elisabetta Marangoni, Fariba Nemati, Ahmed Dahmani, Sonia Lameiras, Fabien Reyal, Olivia Frenoy,[...]. Nat Genet 2019
131
9

Age-related clonal hematopoiesis associated with adverse outcomes.
Siddhartha Jaiswal, Pierre Fontanillas, Jason Flannick, Alisa Manning, Peter V Grauman, Brenton G Mar, R Coleman Lindsley, Craig H Mermel, Noel Burtt, Alejandro Chavez,[...]. N Engl J Med 2014
9

Single-cell genome-wide bisulfite sequencing for assessing epigenetic heterogeneity.
Sébastien A Smallwood, Heather J Lee, Christof Angermueller, Felix Krueger, Heba Saadeh, Julian Peat, Simon R Andrews, Oliver Stegle, Wolf Reik, Gavin Kelsey. Nat Methods 2014
518
9

Single-cell RNA sequencing reveals molecular and functional platelet bias of aged haematopoietic stem cells.
Amit Grover, Alejandra Sanjuan-Pla, Supat Thongjuea, Joana Carrelha, Alice Giustacchini, Adriana Gambardella, Iain Macaulay, Elena Mancini, Tiago C Luis, Adam Mead,[...]. Nat Commun 2016
118
9

Clonal hematopoiesis in human aging and disease.
Siddhartha Jaiswal, Benjamin L Ebert. Science 2019
183
9

Somatic mutations and cell identity linked by Genotyping of Transcriptomes.
Anna S Nam, Kyu-Tae Kim, Ronan Chaligne, Franco Izzo, Chelston Ang, Justin Taylor, Robert M Myers, Ghaith Abu-Zeinah, Ryan Brand, Nathaniel D Omans,[...]. Nature 2019
77
9

Single-cell mutation analysis of clonal evolution in myeloid malignancies.
Linde A Miles, Robert L Bowman, Tiffany R Merlinsky, Isabelle S Csete, Aik T Ooi, Robert Durruthy-Durruthy, Michael Bowman, Christopher Famulare, Minal A Patel, Pedro Mendez,[...]. Nature 2020
78
9

Clonal analysis reveals multiple functional defects of aged murine hematopoietic stem cells.
Brad Dykstra, Sandra Olthof, Jaring Schreuder, Martha Ritsema, Gerald de Haan. J Exp Med 2011
257
9

A cellular census of human lungs identifies novel cell states in health and in asthma.
Felipe A Vieira Braga, Gozde Kar, Marijn Berg, Orestes A Carpaij, Krzysztof Polanski, Lukas M Simon, Sharon Brouwer, Tomás Gomes, Laura Hesse, Jian Jiang,[...]. Nat Med 2019
236
9


Exponential scaling of single-cell RNA-seq in the past decade.
Valentine Svensson, Roser Vento-Tormo, Sarah A Teichmann. Nat Protoc 2018
270
9

An optimized workflow for single-cell transcriptomics and repertoire profiling of purified lymphocytes from clinical samples.
Richa Hanamsagar, Timothy Reizis, Mathew Chamberlain, Robert Marcus, Frank O Nestle, Emanuele de Rinaldis, Virginia Savova. Sci Rep 2020
7
28



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.